TCONS_00035748 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035748
Unique NameTCONS_00035748
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length858

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035748 ID=TCONS_00035748|Name=TCONS_00035748|organism=Clytia hemisphaerica|type=transcript|length=858bp
TTgagataatttttttacttCCTGCAATTTTGACCACTCAAAACTAATCA
TCAGAAAGTTGAGATCATCCACCACCCcagtttccaaccccccccccctt
gtccCGCCGGGAATCGCCTCTGACGGGTATTCTAAGCTAGCAAAGTCAGC
GATAATTTGATTCCATCGTGATCGGATAAGTTCACACATTTACGAATAAC
TTCAATACCATACTCGTACACCAATTCCTTATGTGTCCAAATTTGATCAA
GCATTTTCCCATCGATATGTGTTGGAAAGTTCGGAACTAAATCATAATCT
TGGAGGATGTCAGCCAACAATTATTGATCATGCTCCATTTCAAAGCCGTC
CATGTTGAAGTCTCCTAAAATGATATCAATTGTGTATNAAAGTTCGGAAC
TAAATCATAATCTTGGAGAATGTCAGCCAACAATTGATCATGCTCCATTT
CAAAGCCGTCCATGTTGAAGTCTCCTAAAATGATATCAATCGTGTATCTT
TCAATAAATTGAGCAAGATTGTAACAGAACACATCACGTTGAATTCTGGA
ACTTTTATAGagaaccaaaacacaaaattccttttcagtaaattcagctt
ttctaaattttacaagagaaaaacatgATGAATGATCATACTCATCAATG
TCAATAAAAGAAGGAGAATGACAGACAGTAACACTGTTGAATTTATACTG
GTCAATATTACGACTAAGAATATAATAAGGAAGCTTNGAAATCAAACCAT
ATGTCATCAGAAACTCATTCAtcatttattcattatgtacataatgcagc
atggttatgtttggtatcaaaattcagttgttgtgttataaattttatac
tatatata
Run BLAST on NCBI

protein sequence of TCONS_00035748-protein

>TCONS_00035748-protein ID=TCONS_00035748-protein|Name=TCONS_00035748-protein|organism=Clytia hemisphaerica|type=polypeptide|length=136bp
MMNEFLMTYGLIXKLPYYILSRNIDQYKFNSVTVCHSPSFIDIDEYDHSS
CFSLVKFRKAEFTEKEFCVLVLYKSSRIQRDVFCYNLAQFIERYTIDIIL
GDFNMDGFEMEHDQLLADILQDYDLVPNFXTQLISF
Run BLAST on NCBI

transcript from alignment at sc0001355:59980..60837

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035748 ID=TCONS_00035748|Name=TCONS_00035748|organism=Clytia hemisphaerica|type=transcript|length=858bp|location=Sequence derived from alignment at sc0001355:59980..60837 (Clytia hemisphaerica)
tatatatagtataaaatttataacacaacaactgaattttgataccaaac
ataaccatgctgcattatgtacataatgaataaatgaTGAATGAGTTTCT
GATGACATATGGTTTGATTTCNAAGCTTCCTTATTATATTCTTAGTCGTA
ATATTGACCAGTATAAATTCAACAGTGTTACTGTCTGTCATTCTCCTTCT
TTTATTGACATTGATGAGTATGATCATTCATcatgtttttctcttgtaaa
atttagaaaagctgaatttactgaaaaggaattttgtgttttggttctCT
ATAAAAGTTCCAGAATTCAACGTGATGTGTTCTGTTACAATCTTGCTCAA
TTTATTGAAAGATACACGATTGATATCATTTTAGGAGACTTCAACATGGA
CGGCTTTGAAATGGAGCATGATCAATTGTTGGCTGACATTCTCCAAGATT
ATGATTTAGTTCCGAACTTTNATACACAATTGATATCATTTTAGGAGACT
TCAACATGGACGGCTTTGAAATGGAGCATGATCAATAATTGTTGGCTGAC
ATCCTCCAAGATTATGATTTAGTTCCGAACTTTCCAACACATATCGATGG
GAAAATGCTTGATCAAATTTGGACACATAAGGAATTGGTGTACGAGTATG
GTATTGAAGTTATTCGTAAATGTGTGAACTTATCCGATCACGATGGAATC
AAATTATCGCTGACTTTGCTAGCTTAGAATACCCGTCAGAGGCGATTCCC
GGCGggacaagggggggggggttggaaactgGGGTGGTGGATGATCTCAA
CTTTCTGATGATTAGTTTTGAGTGGTCAAAATTGCAGGaagtaaaaaaat
tatctcAA

Coding sequence (CDS) from alignment at sc0001355:59980..60837

>TCONS_00035748 ID=TCONS_00035748|Name=TCONS_00035748|organism=Clytia hemisphaerica|type=CDS|length=411bp|location=Sequence derived from alignment at sc0001355:59980..60837 (Clytia hemisphaerica)
atgaTGAATGAGTTTCTGATGACATATGGTTTGATTTCNAAGCTTCCTTA
TTATATTCTTAGTCGTAATATTGACCAGTATAAATTCAACAGTGTTACTG
TCTGTCATTCTCCTTCTTTTATTGACATTGATGAGTATGATCATTCATca
tgtttttctcttgtaaaatttagaaaagctgaatttactgaaaaggaatt
ttgtgttttggttctCTATAAAAGTTCCAGAATTCAACGTGATGTGTTCT
GTTACAATCTTGCTCAATTTATTGAAAGATACACGATTGATATCATTTTA
GGAGACTTCAACATGGACGGCTTTGAAATGGAGCATGATCAATTGTTGGC
TGACATTCTCCAAGATTATGATTTAGTTCCGAACTTTNATACACAATTGA
TATCATTTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020965XLOC_020965Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035748-proteinTCONS_00035748-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035748-exon-sc0001355-1491911889:59980..60837TCONS_00035748-exon-sc0001355-1491911889:59980..60837Clytia hemisphaericaexon
TCONS_00035748-exon-sc0001355-1510915933:59980..60837TCONS_00035748-exon-sc0001355-1510915933:59980..60837Clytia hemisphaericaexon
TCONS_00035748-exon-sc0001355-1575043694:59980..60837TCONS_00035748-exon-sc0001355-1575043694:59980..60837Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001355supercontigsc0001355:59980..60837 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.88002	5.32378	3.09376	1.03368	21.0261	18.4546	11.6627	13.2998	5.91864	9.03572	7.60557	7.90846	6.69134	5.37266	5.04187	7.39131	4.89075	5.1943	7.27679	8.49133	6.73677	7.61739	9.89285	7.07548	8.7501	7.65032	15.027	7.90298	11.8037	13.3585
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005135Endo/exonuclease/phosphatase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035748 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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