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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035743 ID=TCONS_00035743|Name=TCONS_00035743|organism=Clytia hemisphaerica|type=transcript|length=1608bp
NNTTTTTCACGTGACCTTTTCTGAGCAGCGTTTTGTTTTTCCAATAAATC
TTTATATTGATCAGTACCTTTAATCTTTTCAACTGATCTCTTTTgtgaac
aatttttttgtttgcgtGATACTTGCCTTGATACAGTACTATTTATACTT
TCCTGATCATGAAAATTAGTTTTGAGATAAATGATATTGAAAAGATTTAT
GTTCTTATACTCAGATCTTATATACTGTTTAATTTCTTGTAAgttgtcaa
attttaaaagaactgaAGTTCCAATACTGCCTTCAACTTGATAGCCTTCG
GAGTCTCTGCTATGCGAGtcaaaaaaagtaatttttgttatagTGCATCA
CAGCTAAGCAATTTCCAGCTATCACTAATACTGCACCAGAATGTTGTAAT
AAGAGTTCCTCCTGAACAAAATTTACTGAAATATTACCACTCTCAAAATA
gccttcaaaaatgttgaaattcaaTGCACAAGTGCTACCCCCTATGTCAA
TTGTCTTGGAAAACTCTTCAACAAATGGAGACTGTCCTGTGATTCccaac
tttttgaaattcaaatcgCCTTGATCTAAAAAATAATCCAAATCATGAGT
CTTCCATAGCGATAATTTTCTCAACTGAGCATagcaaatagcaaaaaaac
aatttgaggaACATTGTATACCTGCCGTCTTGCCAAATTTACAACGATTT
ACGTTGCCCTGGTGAAATGAACCTTGAACAGTTGGGCCTGGGTTAAGTTC
TACATCGCCTGATAATAAGAGTGTGTAattaactttgaaaaaattaaggt
TTGGATCTCCCGCTACATTGGGATATTGAACGAAAATTccatttcttgaa
agattgagAAATTCTAGAGGTGTGTAAAGCTTTGTTAGCTCAAACGATTT
TGGAATTGCAAAACATAGGAGGGTAAAAAGTGCTATGAAACGTACaggtt
caaaaagttttgagaatGCATTATTGGAAAGGTCGGAACCAACAATAATA
GATTTAGCGACACATTTAACGTTTCTCTGAGCTGTAAAAGCTAAACTTCC
TATGCGTGCACGATATAATGCAACAGATATCATCTTCAATTAAGTACAGA
GTAGTCACAGATAGAAAAACTAACTCTAACTAAATATATGACAAAGTATA
TCtggtaaaataaaatattcttgTGAGGATAAATTAAATATATACTAGTA
CTTGCTGACAATGCAGCTTTATGTATTTGATAACTGACAACGCAgttgaa
ttatttttgagctgACAACGCAGCTTTGTGTATTTCTTAACTGACAACGC
AGTTGAATTCTTTATGAGCTGTCGATACGCACAAGCTCGATCGGTCGCAG
GCACAGAATCCACACCTGTCCTGGCCACGGGCTGCCGCAATCAGATTCAG
AGGTGAGTCTCGACCTTGAATCTGAAGCGTGGGAAAAAAAACCACAATCA
GATTCAGTGCAGTGAATGatgaatctgaaaaaaagtggcaaaaaagaaag
aaaagacgCCTCAATCACTTTTTAGGTGAAGGGGCAAAAAAGGTGCTTTA
AACAGATCCACTAGAAAAATAACTCTATGTGGAACTGGAAAAGCAAAGTT
GAAAGTCN Run BLAST on NCBI protein sequence of TCONS_00035743-protein >TCONS_00035743-protein ID=TCONS_00035743-protein|Name=TCONS_00035743-protein|organism=Clytia hemisphaerica|type=polypeptide|length=254bp
MISVALYRARIGSLAFTAQRNVKCVAKSIIVGSDLSNNAFSKLFEPVRFI
ALFTLLCFAIPKSFELTKLYTPLEFLNLSRNGIFVQYPNVAGDPNLNFFK
VNYTLLLSGDVELNPGPTVQGSFHQGNVNRCKFGKTAGIQCSSNCFFAIC
YAQLRKLSLWKTHDLDYFLDQGDLNFKKLGITGQSPFVEEFSKTIDIGGS
TCALNFNIFEGYFESGNISVNFVQEELLLQHSGAVLVIAGNCLAVMHYNK
NYFF Run BLAST on NCBI transcript from alignment at sc0001355:43691..45298 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035743 ID=TCONS_00035743|Name=TCONS_00035743|organism=Clytia hemisphaerica|type=transcript|length=1608bp|location=Sequence derived from alignment at sc0001355:43691..45298 (Clytia hemisphaerica)
NGACTTTCAACTTTGCTTTTCCAGTTCCACATAGAGTTATTTTTCTAGTG
GATCTGTTTAAAGCACCTTTTTTGCCCCTTCACCTAAAAAGTGATTGAGG
cgtcttttctttcttttttgccactttttttcagattcatCATTCACTGC
ACTGAATCTGATTGTGGTTTTTTTTCCCACGCTTCAGATTCAAGGTCGAG
ACTCACCTCTGAATCTGATTGCGGCAGCCCGTGGCCAGGACAGGTGTGGA
TTCTGTGCCTGCGACCGATCGAGCTTGTGCGTATCGACAGCTCATAAAGA
ATTCAACTGCGTTGTCAGTTAAGAAATACACAAAGCTGCGTTGTcagctc
aaaaataattcaacTGCGTTGTCAGTTATCAAATACATAAAGCTGCATTG
TCAGCAAGTACTAGTATATATTTAATTTATCCTCAcaagaatattttatt
ttaccaGATATACTTTGTCATATATTTAGTTAGAGTTAGTTTTTCTATCT
GTGACTACTCTGTACTTAATTGAAGATGATATCTGTTGCATTATATCGTG
CACGCATAGGAAGTTTAGCTTTTACAGCTCAGAGAAACGTTAAATGTGTC
GCTAAATCTATTATTGTTGGTTCCGACCTTTCCAATAATGCattctcaaa
actttttgaacctGTACGTTTCATAGCACTTTTTACCCTCCTATGTTTTG
CAATTCCAAAATCGTTTGAGCTAACAAAGCTTTACACACCTCTAGAATTT
ctcaatctttcaagaaatggAATTTTCGTTCAATATCCCAATGTAGCGGG
AGATCCAAaccttaattttttcaaagttaatTACACACTCTTATTATCAG
GCGATGTAGAACTTAACCCAGGCCCAACTGTTCAAGGTTCATTTCACCAG
GGCAACGTAAATCGTTGTAAATTTGGCAAGACGGCAGGTATACAATGTtc
ctcaaattgtttttttgctatttgctATGCTCAGTTGAGAAAATTATCGC
TATGGAAGACTCATGATTTGGATTATTTTTTAGATCAAGGcgatttgaat
ttcaaaaagttggGAATCACAGGACAGTCTCCATTTGTTGAAGAGTTTTC
CAAGACAATTGACATAGGGGGTAGCACTTGTGCAttgaatttcaacattt
ttgaaggcTATTTTGAGAGTGGTAATATTTCAGTAAATTTTGTTCAGGAG
GAACTCTTATTACAACATTCTGGTGCAGTATTAGTGATAGCTGGAAATTG
CTTAGCTGTGATGCActataacaaaaattactttttttgaCTCGCATAGC
AGAGACTCCGAAGGCTATCAAGTTGAAGGCAGTATTGGAACTtcagttct
tttaaaatttgacaacTTACAAGAAATTAAACAGTATATAAGATCTGAGT
ATAAGAACATAAATCTTTTCAATATCATTTATCTCAAAACTAATTTTCAT
GATCAGGAAAGTATAAATAGTACTGTATCAAGGCAAGTATCacgcaaaca
aaaaaattgttcacAAAAGAGATCAGTTGAAAAGATTAAAGGTACTGATC
AATATAAAGATTTATTGGAAAAACAAAACGCTGCTCAGAAAAGGTCACGT
GAAAAANN Coding sequence (CDS) from alignment at sc0001355:43691..45298 >TCONS_00035743 ID=TCONS_00035743|Name=TCONS_00035743|organism=Clytia hemisphaerica|type=CDS|length=765bp|location=Sequence derived from alignment at sc0001355:43691..45298 (Clytia hemisphaerica)
ATGATATCTGTTGCATTATATCGTGCACGCATAGGAAGTTTAGCTTTTAC
AGCTCAGAGAAACGTTAAATGTGTCGCTAAATCTATTATTGTTGGTTCCG
ACCTTTCCAATAATGCattctcaaaactttttgaacctGTACGTTTCATA
GCACTTTTTACCCTCCTATGTTTTGCAATTCCAAAATCGTTTGAGCTAAC
AAAGCTTTACACACCTCTAGAATTTctcaatctttcaagaaatggAATTT
TCGTTCAATATCCCAATGTAGCGGGAGATCCAAaccttaattttttcaaa
gttaatTACACACTCTTATTATCAGGCGATGTAGAACTTAACCCAGGCCC
AACTGTTCAAGGTTCATTTCACCAGGGCAACGTAAATCGTTGTAAATTTG
GCAAGACGGCAGGTATACAATGTtcctcaaattgtttttttgctatttgc
tATGCTCAGTTGAGAAAATTATCGCTATGGAAGACTCATGATTTGGATTA
TTTTTTAGATCAAGGcgatttgaatttcaaaaagttggGAATCACAGGAC
AGTCTCCATTTGTTGAAGAGTTTTCCAAGACAATTGACATAGGGGGTAGC
ACTTGTGCAttgaatttcaacatttttgaaggcTATTTTGAGAGTGGTAA
TATTTCAGTAAATTTTGTTCAGGAGGAACTCTTATTACAACATTCTGGTG
CAGTATTAGTGATAGCTGGAAATTGCTTAGCTGTGATGCActataacaaa
aattactttttttga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035743-exon-sc0001355-1491911889:43691..45298 | TCONS_00035743-exon-sc0001355-1491911889:43691..45298 | Clytia hemisphaerica | exon |
| TCONS_00035743-exon-sc0001355-1510915933:43691..45298 | TCONS_00035743-exon-sc0001355-1510915933:43691..45298 | Clytia hemisphaerica | exon |
| TCONS_00035743-exon-sc0001355-1575043694:43691..45298 | TCONS_00035743-exon-sc0001355-1575043694:43691..45298 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001355 | supercontig | sc0001355:43691..45298 . |
Blast
The following BLAST results are available for this feature:
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