TCONS_00035740 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035740
Unique NameTCONS_00035740
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length630

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035740 ID=TCONS_00035740|Name=TCONS_00035740|organism=Clytia hemisphaerica|type=transcript|length=630bp
ACAAAAATTAATATTGTTCATAAATAAGATAAATTTTAAAGGATATTGTT
AGTTAAAGTAAGGAAATTACTAGAACAAGAAGACTGATCCCCACCGGTCA
CAAAATCTTAAcgagtcactgagacaggggtgtaattataAACTGAATTT
TCGTAAAGACCTGAAAAAGTTTACTTGCACTTTACGTATTTTCAATGGTA
AAAATGgggattgaaattttatttgtaaaaccaGATTGACATTATTTCAT
TGTTATCgaggtctgaatcgctgcttCGAAATGCTAGAGCTTGCAAAAAC
ATTGCAGTTATTCAGACCAATCATCAAAGCAAAAGAACCCGTGTTACGTC
ACTTGATTGTTTAGTTTCTCTTATAAATTAGATTTCAACAACCCGAAAGT
TTGCGTGGCAAAATGTTGATAAAGAACTGAAATGAATCGCCTGTATTTTT
AAGGGATTTGTGTATTGTTTTAAGCAAACAGATTTATGCATAGATGATCG
ACTTTTACTTAGACgtaaaaattaaactttaaaaaaatatgatattaaat
aattctttttttcgcAATTACTTGATTCAATTAAAACAATTACTTGgttt
ttatatttaattttatattgTTTACCTTTG
Run BLAST on NCBI

transcript from alignment at sc0001355:5784..6413

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035740 ID=TCONS_00035740|Name=TCONS_00035740|organism=Clytia hemisphaerica|type=transcript|length=630bp|location=Sequence derived from alignment at sc0001355:5784..6413 (Clytia hemisphaerica)
CAAAGGTAAAcaatataaaattaaatataaaaacCAAGTAATTGTTTTAA
TTGAATCAAGTAATTgcgaaaaaaagaattatttaatatcatattttttt
aaagtttaatttttacGTCTAAGTAAAAGTCGATCATCTATGCATAAATC
TGTTTGCTTAAAACAATACACAAATCCCTTAAAAATACAGGCGATTCATT
TCAGTTCTTTATCAACATTTTGCCACGCAAACTTTCGGGTTGTTGAAATC
TAATTTATAAGAGAAACTAAACAATCAAGTGACGTAACACGGGTTCTTTT
GCTTTGATGATTGGTCTGAATAACTGCAATGTTTTTGCAAGCTCTAGCAT
TTCGaagcagcgattcagacctcGATAACAATGAAATAATGTCAATCtgg
ttttacaaataaaatttcaatcccCATTTTTACCATTGAAAATACGTAAA
GTGCAAGTAAACTTTTTCAGGTCTTTACGAAAATTCAGTTtataattaca
cccctgtctcagtgactcgTTAAGATTTTGTGACCGGTGGGGATCAGTCT
TCTTGTTCTAGTAATTTCCTTACTTTAACTAACAATATCCTTTAAAATTT
ATCTTATTTATGAACAATATTAATTTTTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020957XLOC_020957Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035740-exon-sc0001355-1491911889:5784..6413TCONS_00035740-exon-sc0001355-1491911889:5784..6413Clytia hemisphaericaexon
TCONS_00035740-exon-sc0001355-1510915933:5784..6413TCONS_00035740-exon-sc0001355-1510915933:5784..6413Clytia hemisphaericaexon
TCONS_00035740-exon-sc0001355-1575043694:5784..6413TCONS_00035740-exon-sc0001355-1575043694:5784..6413Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001355supercontigsc0001355:5784..6413 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	2.3226	1.30893	0.74594	0.578229	0.948533	0.636785	0.447813	0.490952	0	0.0582037	0	0	0	0.0648408	0	0.0937401	0.572627	0	0	0	0	0.0807487	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035740 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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