TCONS_00035736 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035736
Unique NameTCONS_00035736
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length324

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035736 ID=TCONS_00035736|Name=TCONS_00035736|organism=Clytia hemisphaerica|type=transcript|length=324bp
AGTTGATCTGAGTTGATATAAATAAGGAATCATGATAAACTATTGATTTC
ATCTGTTTTTGATTGGGAATTTTCCCATTCATTTCTCTAGACCCCTTAAC
ATATACGCCACCAACAACTACAAAACGACACGCAGATGCTATGTTTCGGG
AAGGTATCAACAATTCAACATCAATCGCCTTtgacaaaataatcaaaacg
aGTGAAGCATGCCATCTTATCCACTCTATAGTTGAGAAGTTGGAAGCTGC
TTCTCACAAAAAAGTTATCTCTGAGTTTGGTGTCGTGTGAGCAGAGTCTT
CTTAACCTATCCAGCTGCGATGAA
Run BLAST on NCBI

transcript from alignment at sc0001355:9060..9520+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035736 ID=TCONS_00035736|Name=TCONS_00035736|organism=Clytia hemisphaerica|type=transcript|length=461bp|location=Sequence derived from alignment at sc0001355:9060..9520+ (Clytia hemisphaerica)
AGTTGATCTGAGTTGATATAAATAAGGAATCATGATAAACTATTGATTTC
ATCTGTTTTTGATTGGGAATTTTCCCATTCATTTCTCTAGACCCCTTAAC
ATATACGCCACCAACAACTACAAAACGACACGCAGATGCTATGTTTCGGG
AAGGTATTCCAACTACACTTGTTTCGTTCGCAATtgctttttcattattt
ttttatatttcaattttaagagtcaaaattcaaaagttattgTTGCCAGG
TAGATAATGATAAGTTGTTTTTATCTTTAATCACACAAAGGTATCAACAA
TTCAACATCAATCGCCTTtgacaaaataatcaaaacgaGTGAAGCATGCC
ATCTTATCCACTCTATAGTTGAGAAGTTGGAAGCTGCTTCTCACAAAAAA
GTTATCTCTGAGTTTGGTGTCGTGTGAGCAGAGTCTTCTTAACCTATCCA
GCTGCGATGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020954XLOC_020954Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035736-exon-sc0001355-1491911889:9060..9212TCONS_00035736-exon-sc0001355-1491911889:9060..9212Clytia hemisphaericaexon
TCONS_00035736-exon-sc0001355-1510915933:9060..9212TCONS_00035736-exon-sc0001355-1510915933:9060..9212Clytia hemisphaericaexon
TCONS_00035736-exon-sc0001355-1575043694:9060..9212TCONS_00035736-exon-sc0001355-1575043694:9060..9212Clytia hemisphaericaexon
TCONS_00035736-exon-sc0001355-1491911889:9350..9520TCONS_00035736-exon-sc0001355-1491911889:9350..9520Clytia hemisphaericaexon
TCONS_00035736-exon-sc0001355-1510915933:9350..9520TCONS_00035736-exon-sc0001355-1510915933:9350..9520Clytia hemisphaericaexon
TCONS_00035736-exon-sc0001355-1575043694:9350..9520TCONS_00035736-exon-sc0001355-1575043694:9350..9520Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001355supercontigsc0001355:9060..9520 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.30848	0	0	0	0.416003	0	0	0.371292	0.25995	0.32199	0.625063	0.205446	0.410321	0	0.525496	0	0.926299	0.474713	0	0.343146	0	0.872873	0.707394	0	0	0	1.26896	0.451424	1.71194	1.39536
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035736 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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