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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035734 ID=TCONS_00035734|Name=TCONS_00035734|organism=Clytia hemisphaerica|type=transcript|length=4069bp
GNCAGAGACCCCACTCGgcatgtttttcatgattttcatgatttttggaa
ttttagcatttttcatcatttttagcatgtttttggcaaagttggcatgt
tttttcaggaaatccaatcttcaagaaaaaagtttatactgttttattga
aatattactGTTATCGActgaaataattatttcaaagtTTGTGTAATTGC
Aacatttgatttctttttagaaactataatcaaatcaaaatgttcaattt
tgtttCCTCCTTGAACTTTTACTTATTGCTTTTTAAGAGATAGTTatagt
ttttataattttgatttgGTATATGAAAAACTGAATTGTAGTTCTCAGAG
GTCCACAGCTTTGTAATGAATTGTGAAGACTTTCTCTAAATATAGGTCTC
CTTTTGTAAGAAATAACAGTCGACATAAcagtttttcgaattttcttttt
agACAAGCAACTAGTAATAAGAGAAAAAGTTAATAATAGACATGGGAAAG
ACAAAATTCAAAGCTAGTTGGAAACAGGATAGACCTTGGTTGGTTGAAGT
TAAAAACAACGTTCACGAGGCTTTGTGCACAGTTTGTGGAGACAAATTAA
ATATAACAAGTGGCATAGGAGCGGTTAAATCTCATGAAACAAGACCAAAA
CACTTAAGTAATTTACAAAGTCATTCAAGACAGTCAACATTTATTAGAAA
GGATGAGAAAGGTACTTTGACCTTGAAATCTCCTAGTGGTGAATATCAAC
TTACGTCAGAGGAGCAGAAATGGAAAGCCGAAATTCTTCATTCTTTGAAT
GTCGTCGacaaaaatttctcattttcatCATGTTCTTCGGACAACTATTT
GAATCGTGAGAAGTTTCCAGATTCCGACATTGCTAAAGCCTACGAGATGT
CCTCCACCAAGGTTGCTTATTTAATAAAGTTTGGAATTGCTAAATATTTC
CAAGACGAACTGTTAAAGGAGGTCCATGATCAACCATTTACCTTCCATTT
TGATGAGTCGACTACATCACAGACCAAAAAGCAATATGACGGGTATGTCA
GGTTTTATTCCTTTACATCTGGTGAAGTTGTGGTCGCTTATTGCGGCACG
CTGTTCGTTGGAAGATGCAAAGCGAATGATTTGTTGGATCATctacacat
attcttcaaaaagaaCAATCTTAACGTGAACATGTTGCTCAACTTGGGCC
TGGATGGACCCAATGTCAATCTTGCCTTTATGGAACTTTTGAAGAAGTCA
ATTACTTTCATTGACATAGGAACGTGTGCTTTACATGTATGTAACAATGC
ATTTGGAAGGTTAGTAAAAGAACTAAATTGCATTGTCGAGCTTGATCAGA
TGGCGATCgattttcatttcttcttcaAGTACTCTGCTGGAAGACGAGAA
GACTATTCTAAAGTCACTGAGCTAACGGGTGTTCTGACGCAACACCTAGA
AAAACATTGTGCATCAAGATGGATTAGCTTGGACAGAGTTTTAATTAAAC
TAATCGAACAGTTccttaacttgaaaaattacttCATGAAAAAAGTACCT
GAACTACCCGGATTTAAAGGCAAGTCAGGAATTGCTGCCACGAGCAGATA
CAAACGCATCAAACAATATCTCACTGATGAAAGAGTTTTGATCGTCATGC
ATTTTGTTGCTAGTGTTGCACAAGATTTTCAAGCTTTCATTAAGCCATTG
CAAACGAAAAGTCCAATGATCCACATTCTTCATTCTAAATGCACCAAATT
AATTCACACTTTGCTCCGACGGTTTATTCTGGAAAACAAAATCAGCAACT
CAAAGACCAAAAAACCAATTGGTACAAATAAACTACTTGATCTTGAAGTT
AAAGACTCAACAAATCAAACAGTAAGAagaataatcaaaattttcgcACC
TTTCTGACATTGAAAATAGCTCTTGTTTTATAGTACTTACTCCAACTTAC
TCTTTTACATCATGTTTTGATTTAAGAAAGGTAATGCGATTAcagttatt
ttgaaattttatttaaaataaaatacttCACTCTCTAAAATTTAGCTTGA
CTGTAATTTTGGTGACGGAGCAAAGAAGCTGTTGGCTAATTTGgatgcac
ttgagaaaaagaAGCTTTCTGAAACCTTTGTAGAAGCGCTTAGCACCTCA
GCCGAGTATCTCATCGAGGAATTGCCATTTACAGTTCAAGTGGTTGCTGA
TGCAAGGTTTTTGCATCCTCTTATGCGTACCTCAAAGGTTGCACCTGAAG
CTATTAGAAGATTGTGCTCGACAATACTCCCAGCGCTGCCAGACGATTTC
ATCAAAAAGAAGTTTCAATCGATATCCAGTGAATCTACATTAGTAACAGA
TCTGGTAATGAGCGAGTTTAAAATGTATCAGTTGGAGTCCATACCAAAAT
CATTCTACGAAGAGCAGAGTAAAAAGAAAACGTCATCAGATAGAGAGCAA
TCCTCTTATTGGAAGTATGCATATGGCATCGCTGATGTCCAACGTGCAGA
ACCAGACACAGATTCGGCTTTCATAAGAGTTGATAAGTATTGGAGTAAGG
TAAGGTTGTAACTGTAGGTTAATTTAAAACACAGCCCAGTAGACTTACAT
AGATATTAAAATATGCTTTAGCTTGGTGCTTGGTACTTTTGCTAAGACTA
TTTTGTTCTATTTGAATAGATCAAGTGTCTCTATTGAAATACCATTGATG
TTTGTTAAAAGTATCACTCTTTCGTTTTGAAGGTAGGGGCAATCTGTGGA
ATTGACGGtacgaaaaagttttcaaagttAACTGCGCTGGTCAATTGTGT
TCTGATTCTTTCACATGGCAATGCTGACCCTGAACGAGGATTTTCAATTA
ATAAACATCTATTACAAATTCATGGCAGCAACACAGGCGAGGAAACATTG
GAAGCGTTGAGGATCGTCAAAGATTCCATCATTCGGAAAGGGGGAATTGA
GAATGTCCAAGTTACAAAAGCTTTGATTCAGTCTTGTAAAAATGCTCATT
CGCTTTATATGGCAGAGCTTGCTGAGAAGAAAAGACAAGAGAAAACCACT
TTATTAGAGGCAAAAAATGCTCAGGAGAAAGAAGATCAGTTGAAAGTCGT
TAACGAGATTGACAATGATATGATTCTGATTCAGTCTGGTATAGAAATAG
CTGAGGCATCAATTTCGGAAGGAAATGAGGAAATGGAGCTATTGATTAAA
GGCCAAAAGTTAGATCGAGAACGTTTAGCTCAAGCTCATCAGAAAATCAA
TATGGGTGTTAAACGAAAAGCTGAACTTCAAATATCATTACGAGAGGCAG
AGgccaaaaagaaaaagcttAGTTAATTGATAACATATTGACAGTTATAC
TATGTAGTCTTTAGATATTCGTTGATATTGATATCTTTGTTATACTTTGT
ATATGCTTTTGTTTGCTCTTACTTCTTTGAGGTGCTCATGACTCCTTTGA
ATCTAGTTACATTTCTTTAGGATCACAGTTTTATGAAGAATGATATCACT
AGGAGAATCTTGAACTTGCCTTTAGGCTGTTGCTGATAGGGATAGGGTTT
TCTATAATCTGAACACTGCAGTAATAGATATCATTTTCTTCATTTGTATA
TACTAACGTTATTTTCATATATTATCAGATACTTGTACCCTTTGCTGtct
gttttttgaaaaaaagttttttaaggttttcaCCAAGACCATTCCACTTG
GTTTTTCACACATTCGAGACTTTCAATAACACGTAGCGCTTCAGTAGAGA
TATCATTACAAAGAATTTTGGTAGTCCGTTTCGTAAGTTGGGAAGATTCA
ATTAtgacttttaaaacttttaatcgTTATTTTAAAGGATACATTGAAAA
ACACTTTTATAATTCAAAGTAAATTATAATGAATGTATTGGTATTGGTTT
AAGTAAAAGAAGAGACTAaaactttaaagattttgaaaatggcattttca
tgtttttgggattgaaaatggcattttttcatttttttcagtgCTAGAAT
ggcattttttagcatttttttcgggaatttttggcattttttcatgcatg
tttttttaaaaaagccaGT Run BLAST on NCBI protein sequence of TCONS_00035734-protein >TCONS_00035734-protein ID=TCONS_00035734-protein|Name=TCONS_00035734-protein|organism=Clytia hemisphaerica|type=polypeptide|length=471bp
MGKTKFKASWKQDRPWLVEVKNNVHEALCTVCGDKLNITSGIGAVKSHET
RPKHLSNLQSHSRQSTFIRKDEKGTLTLKSPSGEYQLTSEEQKWKAEILH
SLNVVDKNFSFSSCSSDNYLNREKFPDSDIAKAYEMSSTKVAYLIKFGIA
KYFQDELLKEVHDQPFTFHFDESTTSQTKKQYDGYVRFYSFTSGEVVVAY
CGTLFVGRCKANDLLDHLHIFFKKNNLNVNMLLNLGLDGPNVNLAFMELL
KKSITFIDIGTCALHVCNNAFGRLVKELNCIVELDQMAIDFHFFFKYSAG
RREDYSKVTELTGVLTQHLEKHCASRWISLDRVLIKLIEQFLNLKNYFMK
KVPELPGFKGKSGIAATSRYKRIKQYLTDERVLIVMHFVASVAQDFQAFI
KPLQTKSPMIHILHSKCTKLIHTLLRRFILENKISNSKTKKPIGTNKLLD
LEVKDSTNQTVRRIIKIFAPF Run BLAST on NCBI transcript from alignment at sc0001354:38355..42423 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035734 ID=TCONS_00035734|Name=TCONS_00035734|organism=Clytia hemisphaerica|type=transcript|length=4069bp|location=Sequence derived from alignment at sc0001354:38355..42423 (Clytia hemisphaerica)
ACtggcttttttaaaaaaacatgcatgaaaaaatgccaaaaattcccgaa
aaaaatgctaaaaaatgccATTCTAGcactgaaaaaaatgaaaaaatgcc
attttcaatcccaaaaacatgaaaatgccattttcaaaatctttaaagtt
tTAGTCTCTTCTTTTACTTAAACCAATACCAATACATTCATTATAATTTA
CTTTGAATTATAAAAGTGTTTTTCAATGTATCCTTTAAAATAAcgattaa
aagttttaaaagtcaTAATTGAATCTTCCCAACTTACGAAACGGACTACC
AAAATTCTTTGTAATGATATCTCTACTGAAGCGCTACGTGTTATTGAAAG
TCTCGAATGTGTGAAAAACCAAGTGGAATGGTCTTGGtgaaaaccttaaa
aaactttttttcaaaaaacagaCAGCAAAGGGTACAAGTATCTGATAATA
TATGAAAATAACGTTAGTATATACAAATGAAGAAAATGATATCTATTACT
GCAGTGTTCAGATTATAGAAAACCCTATCCCTATCAGCAACAGCCTAAAG
GCAAGTTCAAGATTCTCCTAGTGATATCATTCTTCATAAAACTGTGATCC
TAAAGAAATGTAACTAGATTCAAAGGAGTCATGAGCACCTCAAAGAAGTA
AGAGCAAACAAAAGCATATACAAAGTATAACAAAGATATCAATATCAACG
AATATCTAAAGACTACATAGTATAACTGTCAATATGTTATCAATTAACTa
agctttttctttttggcCTCTGCCTCTCGTAATGATATTTGAAGTTCAGC
TTTTCGTTTAACACCCATATTGATTTTCTGATGAGCTTGAGCTAAACGTT
CTCGATCTAACTTTTGGCCTTTAATCAATAGCTCCATTTCCTCATTTCCT
TCCGAAATTGATGCCTCAGCTATTTCTATACCAGACTGAATCAGAATCAT
ATCATTGTCAATCTCGTTAACGACTTTCAACTGATCTTCTTTCTCCTGAG
CATTTTTTGCCTCTAATAAAGTGGTTTTCTCTTGTCTTTTCTTCTCAGCA
AGCTCTGCCATATAAAGCGAATGAGCATTTTTACAAGACTGAATCAAAGC
TTTTGTAACTTGGACATTCTCAATTCCCCCTTTCCGAATGATGGAATCTT
TGACGATCCTCAACGCTTCCAATGTTTCCTCGCCTGTGTTGCTGCCATGA
ATTTGTAATAGATGTTTATTAATTGAAAATCCTCGTTCAGGGTCAGCATT
GCCATGTGAAAGAATCAGAACACAATTGACCAGCGCAGTTaactttgaaa
actttttcgtaCCGTCAATTCCACAGATTGCCCCTACCTTCAAAACGAAA
GAGTGATACTTTTAACAAACATCAATGGTATTTCAATAGAGACACTTGAT
CTATTCAAATAGAACAAAATAGTCTTAGCAAAAGTACCAAGCACCAAGCT
AAAGCATATTTTAATATCTATGTAAGTCTACTGGGCTGTGTTTTAAATTA
ACCTACAGTTACAACCTTACCTTACTCCAATACTTATCAACTCTTATGAA
AGCCGAATCTGTGTCTGGTTCTGCACGTTGGACATCAGCGATGCCATATG
CATACTTCCAATAAGAGGATTGCTCTCTATCTGATGACGTTTTCTTTTTA
CTCTGCTCTTCGTAGAATGATTTTGGTATGGACTCCAACTGATACATTTT
AAACTCGCTCATTACCAGATCTGTTACTAATGTAGATTCACTGGATATCG
ATTGAAACTTCTTTTTGATGAAATCGTCTGGCAGCGCTGGGAGTATTGTC
GAGCACAATCTTCTAATAGCTTCAGGTGCAACCTTTGAGGTACGCATAAG
AGGATGCAAAAACCTTGCATCAGCAACCACTTGAACTGTAAATGGCAATT
CCTCGATGAGATACTCGGCTGAGGTGCTAAGCGCTTCTACAAAGGTTTCA
GAAAGCTtctttttctcaagtgcatcCAAATTAGCCAACAGCTTCTTTGC
TCCGTCACCAAAATTACAGTCAAGCTAAATTTTAGAGAGTGaagtatttt
attttaaataaaatttcaaaataactgTAATCGCATTACCTTTCTTAAAT
CAAAACATGATGTAAAAGAGTAAGTTGGAGTAAGTACTATAAAACAAGAG
CTATTTTCAATGTCAGAAAGGTgcgaaaattttgattattctTCTTACTG
TTTGATTTGTTGAGTCTTTAACTTCAAGATCAAGTAGTTTATTTGTACCA
ATTGGTTTTTTGGTCTTTGAGTTGCTGATTTTGTTTTCCAGAATAAACCG
TCGGAGCAAAGTGTGAATTAATTTGGTGCATTTAGAATGAAGAATGTGGA
TCATTGGACTTTTCGTTTGCAATGGCTTAATGAAAGCTTGAAAATCTTGT
GCAACACTAGCAACAAAATGCATGACGATCAAAACTCTTTCATCAGTGAG
ATATTGTTTGATGCGTTTGTATCTGCTCGTGGCAGCAATTCCTGACTTGC
CTTTAAATCCGGGTAGTTCAGGTACTTTTTTCATGaagtaatttttcaag
ttaaggAACTGTTCGATTAGTTTAATTAAAACTCTGTCCAAGCTAATCCA
TCTTGATGCACAATGTTTTTCTAGGTGTTGCGTCAGAACACCCGTTAGCT
CAGTGACTTTAGAATAGTCTTCTCGTCTTCCAGCAGAGTACTtgaagaag
aaatgaaaatcGATCGCCATCTGATCAAGCTCGACAATGCAATTTAGTTC
TTTTACTAACCTTCCAAATGCATTGTTACATACATGTAAAGCACACGTTC
CTATGTCAATGAAAGTAATTGACTTCTTCAAAAGTTCCATAAAGGCAAGA
TTGACATTGGGTCCATCCAGGCCCAAGTTGAGCAACATGTTCACGTTAAG
ATTGttctttttgaagaatatgtgtagATGATCCAACAAATCATTCGCTT
TGCATCTTCCAACGAACAGCGTGCCGCAATAAGCGACCACAACTTCACCA
GATGTAAAGGAATAAAACCTGACATACCCGTCATATTGCTTTTTGGTCTG
TGATGTAGTCGACTCATCAAAATGGAAGGTAAATGGTTGATCATGGACCT
CCTTTAACAGTTCGTCTTGGAAATATTTAGCAATTCCAAACTTTATTAAA
TAAGCAACCTTGGTGGAGGACATCTCGTAGGCTTTAGCAATGTCGGAATC
TGGAAACTTCTCACGATTCAAATAGTTGTCCGAAGAACATGatgaaaatg
agaaatttttgtCGACGACATTCAAAGAATGAAGAATTTCGGCTTTCCAT
TTCTGCTCCTCTGACGTAAGTTGATATTCACCACTAGGAGATTTCAAGGT
CAAAGTACCTTTCTCATCCTTTCTAATAAATGTTGACTGTCTTGAATGAC
TTTGTAAATTACTTAAGTGTTTTGGTCTTGTTTCATGAGATTTAACCGCT
CCTATGCCACTTGTTATATTTAATTTGTCTCCACAAACTGTGCACAAAGC
CTCGTGAACGTTGTTTTTAACTTCAACCAACCAAGGTCTATCCTGTTTCC
AACTAGCTTTGAATTTTGTCTTTCCCATGTCTATTATTAACTTTTTCTCT
TATTACTAGTTGCTTGTctaaaaagaaaattcgaaaaactgTTATGTCGA
CTGTTATTTCTTACAAAAGGAGACCTATATTTAGAGAAAGTCTTCACAAT
TCATTACAAAGCTGTGGACCTCTGAGAACTACAATTCAGTTTTTCATATA
CcaaatcaaaattataaaaactatAACTATCTCTTAAAAAGCAATAAGTA
AAAGTTCAAGGAGGaaacaaaattgaacattttgatttgattatagtttc
taaaaagaaatcaaatgtTGCAATTACACAAactttgaaataattatttc
agTCGATAACagtaatatttcaataaaacagtataaacttttttcttgaa
gattggatttcctgaaaaaacatgccaactttgccaaaaacatgctaaaa
atgatgaaaaatgctaaaattccaaaaatcatgaaaatcatgaaaaacat
gcCGAGTGGGGTCTCTGNC Coding sequence (CDS) from alignment at sc0001354:38355..42423 >TCONS_00035734 ID=TCONS_00035734|Name=TCONS_00035734|organism=Clytia hemisphaerica|type=CDS|length=1416bp|location=Sequence derived from alignment at sc0001354:38355..42423 (Clytia hemisphaerica)
TCAGAAAGGTgcgaaaattttgattattctTCTTACTGTTTGATTTGTTG
AGTCTTTAACTTCAAGATCAAGTAGTTTATTTGTACCAATTGGTTTTTTG
GTCTTTGAGTTGCTGATTTTGTTTTCCAGAATAAACCGTCGGAGCAAAGT
GTGAATTAATTTGGTGCATTTAGAATGAAGAATGTGGATCATTGGACTTT
TCGTTTGCAATGGCTTAATGAAAGCTTGAAAATCTTGTGCAACACTAGCA
ACAAAATGCATGACGATCAAAACTCTTTCATCAGTGAGATATTGTTTGAT
GCGTTTGTATCTGCTCGTGGCAGCAATTCCTGACTTGCCTTTAAATCCGG
GTAGTTCAGGTACTTTTTTCATGaagtaatttttcaagttaaggAACTGT
TCGATTAGTTTAATTAAAACTCTGTCCAAGCTAATCCATCTTGATGCACA
ATGTTTTTCTAGGTGTTGCGTCAGAACACCCGTTAGCTCAGTGACTTTAG
AATAGTCTTCTCGTCTTCCAGCAGAGTACTtgaagaagaaatgaaaatcG
ATCGCCATCTGATCAAGCTCGACAATGCAATTTAGTTCTTTTACTAACCT
TCCAAATGCATTGTTACATACATGTAAAGCACACGTTCCTATGTCAATGA
AAGTAATTGACTTCTTCAAAAGTTCCATAAAGGCAAGATTGACATTGGGT
CCATCCAGGCCCAAGTTGAGCAACATGTTCACGTTAAGATTGttcttttt
gaagaatatgtgtagATGATCCAACAAATCATTCGCTTTGCATCTTCCAA
CGAACAGCGTGCCGCAATAAGCGACCACAACTTCACCAGATGTAAAGGAA
TAAAACCTGACATACCCGTCATATTGCTTTTTGGTCTGTGATGTAGTCGA
CTCATCAAAATGGAAGGTAAATGGTTGATCATGGACCTCCTTTAACAGTT
CGTCTTGGAAATATTTAGCAATTCCAAACTTTATTAAATAAGCAACCTTG
GTGGAGGACATCTCGTAGGCTTTAGCAATGTCGGAATCTGGAAACTTCTC
ACGATTCAAATAGTTGTCCGAAGAACATGatgaaaatgagaaatttttgt
CGACGACATTCAAAGAATGAAGAATTTCGGCTTTCCATTTCTGCTCCTCT
GACGTAAGTTGATATTCACCACTAGGAGATTTCAAGGTCAAAGTACCTTT
CTCATCCTTTCTAATAAATGTTGACTGTCTTGAATGACTTTGTAAATTAC
TTAAGTGTTTTGGTCTTGTTTCATGAGATTTAACCGCTCCTATGCCACTT
GTTATATTTAATTTGTCTCCACAAACTGTGCACAAAGCCTCGTGAACGTT
GTTTTTAACTTCAACCAACCAAGGTCTATCCTGTTTCCAACTAGCTTTGA
ATTTTGTCTTTCCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035734-exon-sc0001354-1491911889:38355..42423 | TCONS_00035734-exon-sc0001354-1491911889:38355..42423 | Clytia hemisphaerica | exon |
| TCONS_00035734-exon-sc0001354-1510915933:38355..42423 | TCONS_00035734-exon-sc0001354-1510915933:38355..42423 | Clytia hemisphaerica | exon |
| TCONS_00035734-exon-sc0001354-1575043694:38355..42423 | TCONS_00035734-exon-sc0001354-1575043694:38355..42423 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001354 | supercontig | sc0001354:38355..42423 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR012337 | RNaseH-like_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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