TCONS_00035733 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035733
Unique NameTCONS_00035733
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length844

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035733 ID=TCONS_00035733|Name=TCONS_00035733|organism=Clytia hemisphaerica|type=transcript|length=844bp
CGTGGACCTTAGTGAATATAGATGTAGATATTTTTGAACCCGCAAGAACT
GTTTAAGAAACATTAAACCTTGAGTAGTTTATTGGTTTTTTACATGGCGC
CCGATGAGGGACACGagagaagaaattattgatcaaGTAGCTGAGCTGAG
TTCCTGAAATTTACGTTTGTTGCTGAATTTTGGAGAATTGAAGTTTTGGA
GATCCAAGATCCATAAATGAACAATAATTGTACGAGATATATTCAACCTC
AAACGTAAGATGAACCTTTCCTCTGTCTGAAGTTACAACTACTTGATGAC
TAGAACTGAATTTGACTgaactcattttgaaattttgagaaatttacgat
tttttgactgttttgaagcatttttgagaactttttagactgaatctttt
tctctctttctcgAGCGTACtgattcttgattttttctcttgaTGTTGTT
TGAACTTTCTTGATATTTGATGTTTTGAATGAGACAGATTCTGTGTGTGG
AATTCTGATTTTTCTTGATTGATATTTGCTCTAGGCATaagattttaaag
atattttgacTGACGAACCCTTGACAGTATTTTTTACGACTTAAAAGGTA
CTGAAATTCCTTGATTGCAAGGATATTTACTGATTTTTGGACGATATTTT
TTCTtgacagaatttttttgaacTGATTTAGAGATTCACTCTtattctca
ttttgatttgagtttttgGAGCACGTTTTTTCTAGTAGGAGCCTAGAAAA
GAGAAATTTGCTTTGtttgaattgcaaaataatAGAATTCGATTGGCCGC
GATAATTTATGCGATTTTTCCCTCTTTATGTTGAGACGCGTGAT
Run BLAST on NCBI

transcript from alignment at sc0001354:35973..36816

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035733 ID=TCONS_00035733|Name=TCONS_00035733|organism=Clytia hemisphaerica|type=transcript|length=844bp|location=Sequence derived from alignment at sc0001354:35973..36816 (Clytia hemisphaerica)
ATCACGCGTCTCAACATAAAGAGGGAAAAATCGCATAAATTATCGCGGCC
AATCGAATTCTattattttgcaattcaaaCAAAGCAAATTTCTCTTTTCT
AGGCTCCTACTAGAAAAAACGTGCTCcaaaaactcaaatcaaaatgagaa
taAGAGTGAATCTCTAAATCAgttcaaaaaaattctgtcaAGAAAAAATA
TCGTCCAAAAATCAGTAAATATCCTTGCAATCAAGGAATTTCAGTACCTT
TTAAGTCGTAAAAAATACTGTCAAGGGTTCGTCAgtcaaaatatctttaa
aatcttATGCCTAGAGCAAATATCAATCAAGAAAAATCAGAATTCCACAC
ACAGAATCTGTCTCATTCAAAACATCAAATATCAAGAAAGTTCAAACAAC
AtcaagagaaaaaatcaagaatcaGTACGCTcgagaaagagagaaaaaga
ttcagtctaaaaagttctcaaaaatgcttcaaaacagtcaaaaaatcgta
aatttctcaaaatttcaaaatgagttcAGTCAAATTCAGTTCTAGTCATC
AAGTAGTTGTAACTTCAGACAGAGGAAAGGTTCATCTTACGTTTGAGGTT
GAATATATCTCGTACAATTATTGTTCATTTATGGATCTTGGATCTCCAAA
ACTTCAATTCTCCAAAATTCAGCAACAAACGTAAATTTCAGGAACTCAGC
TCAGCTACttgatcaataatttcttctctCGTGTCCCTCATCGGGCGCCA
TGTAAAAAACCAATAAACTACTCAAGGTTTAATGTTTCTTAAACAGTTCT
TGCGGGTTCAAAAATATCTACATCTATATTCACTAAGGTCCACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020951XLOC_020951Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035733-exon-sc0001354-1491911889:35973..36816TCONS_00035733-exon-sc0001354-1491911889:35973..36816Clytia hemisphaericaexon
TCONS_00035733-exon-sc0001354-1510915933:35973..36816TCONS_00035733-exon-sc0001354-1510915933:35973..36816Clytia hemisphaericaexon
TCONS_00035733-exon-sc0001354-1575043694:35973..36816TCONS_00035733-exon-sc0001354-1575043694:35973..36816Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001354supercontigsc0001354:35973..36816 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0632594	0	28.2542	19.2308	6.82388	9.0783	0.517891	1.6912	0.735855	0.334885	0.111473	0.115766	0.0317251	0.306413	0.71301	0.601845	0.0593915	0.124298	1.45851	0.790453	0.89684	0.757118	0.239943	1.07072	0.153219	0.0817597	0.186036	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035733 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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