|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035727 ID=TCONS_00035727|Name=TCONS_00035727|organism=Clytia hemisphaerica|type=transcript|length=2202bpRun BLAST on NCBI transcript from alignment at sc0001354:55180..67331- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00035727 ID=TCONS_00035727|Name=TCONS_00035727|organism=Clytia hemisphaerica|type=transcript|length=12152bp|location=Sequence derived from alignment at sc0001354:55180..67331- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00035727 vs. Swiss-Prot (Human)
Match: FUK (L-fucose kinase OS=Homo sapiens GN=FUK PE=2 SV=2) HSP 1 Score: 337.806 bits (865), Expect = 4.278e-101 Identity = 222/672 (33.04%), Postives = 321/672 (47.77%), Query Frame = 2
Query: 2 LASDSPPGFWICSCDRLINLPKEINIDWSEEDDVYLFTVPVNMETAANKHGVVKYNENELTIDDIIYKGSTERISVCKMKDEKVPIISGVVFLNTNFIEALLNVSIFHPLVLWTYLGVDSGSDNVGNRPFASEMQGVYRTDEKNIVLSLFFDILLCMASNVSKEDYVKGERSGVYGTVHFPDLNKVDVTLRS---NARNVLWDALNE--FSMQGVQLKGSEFHFISHDPQTLHKLYLQ-YPHHQTVQSI--RDITLTFKRKISSLDLNGEVESSVIINSLVPEDNVQRNTVILNSVIEENVKVGSNSFLINLCCEDFSVLKGGPGKTEISLPDDIVLESFYLNFDSNNVDKRTKRILLMFGIQDCLQTAACMENSTVFNQSWKTFFKRTTILPQEIWDPTIPENNKCLLNAKLFPVYYPRGEINILPLLWLHGSIEDPA-IMNLWRSSWRLSMKEIMDLSNAEEEFSWRKQLHFEIGKRQLEKALKERMNICLLPFFRTSIMNGFFENLLDALDNVIKTSDDASVTSRTFACIADVLGSKAQNRGGLRSGPAANHLWKKGLSLLEADKVIEAVDVMATQRKQWTKRHDLLVRSARHYEGAFQILVRKAVSTARQFISLTQKDAVPLQTWVTAEAPGRLDWSGGWSDTPPISFDQGGKVVTFALSLNNKVPIN 1990
L SPPG W+CS D L+++P I W + +P + A N HGV + L +D I Y+G+ I C D +VP++SGVVF + E LL + PL TYLG+DSG+ RP + LSLFFDIL CMA NV++ED++ G P+L + D + +AR LW L + +M V GS + S + L L L P Q V S L + S L G V+ L P +V+ + ++ + +G+ + L L G E+ D+VL+ + + T + G D + T N W FFKRT + ++WDP CL +A+LFPV +P E+ LLW+ ED + WR+SWRLS +++ + + R+ L F + L+ R ++ L P ++ G LL LD V + D V +R AC+ADVLG A+ RGGLRSGPAAN W + S LE + V+ +A +R +W R LLVR+ARHYEGA QIL+R+AV +A+ F+S Q + WV AE P R+D+SGGWSDTPP++++ GG V+ A+ ++ + PI
Sbjct: 138 LGPGSPPGVWVCSTDMLLSVPANPGISWDSFRGARVIALPGSPAYAQN-HGVYLTDPQGLVLD-IYYQGTEAEIQRCVRPDGRVPLVSGVVFFSVETAERLLATHVSPPLDACTYLGLDSGA-----RP---------------VQLSLFFDILHCMAENVTREDFLVGRP---------PELGQGDADVAGYLQSARAQLWRELRDQPLTMAYVS-SGSYSYMTSSASEFLLSLTLPGAPGAQIVHSQVEEQQLLAAGSSVVSCLLEGPVQ-------LGP------GSVLQHCHLQGPIHIGAGCLVTGLDTAHSKALHG----RELR---DLVLQGHHTRLHGSPGHAFT-----LVGRLDSWERQGA---GTYLNVPWSEFFKRTGVRAWDLWDPETLPAEYCLPSARLFPVLHPSRELGPQDLLWMLDHQEDGGEALRAWRASWRLSWEQLQPCLDRAATLASRRDLFFRQALHKARHVLEARQDLSLRPLIWAAVREGCPGPLLATLDQVAAGAGDPGVAARALACVADVLGCMAEGRGGLRSGPAANPEWMRPFSYLECGDLAAGVEALAQERDKWLSRPALLVRAARHYEGAGQILIRQAVMSAQHFVSTEQVELPGPGQWVVAECPARVDFSGGWSDTPPLAYELGGAVLGLAVRVDGRRPIG 749 The following BLAST results are available for this feature:
BLAST of TCONS_00035727 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2026, MARIMBA.