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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035726 ID=TCONS_00035726|Name=TCONS_00035726|organism=Clytia hemisphaerica|type=transcript|length=3386bpRun BLAST on NCBI protein sequence of TCONS_00035726-protein >TCONS_00035726-protein ID=TCONS_00035726-protein|Name=TCONS_00035726-protein|organism=Clytia hemisphaerica|type=polypeptide|length=663bp LASDSPPGFWICSCDRLINLPKEINIDWSEEDDVYLFTVPVNMETAANKHRun BLAST on NCBI transcript from alignment at sc0001354:49350..67331- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00035726 ID=TCONS_00035726|Name=TCONS_00035726|organism=Clytia hemisphaerica|type=transcript|length=17982bp|location=Sequence derived from alignment at sc0001354:49350..67331- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0001354:49350..67331- >TCONS_00035726 ID=TCONS_00035726|Name=TCONS_00035726|organism=Clytia hemisphaerica|type=CDS|length=39840bp|location=Sequence derived from alignment at sc0001354:49350..67331- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00035726 vs. Swiss-Prot (Human)
Match: FUK (L-fucose kinase OS=Homo sapiens GN=FUK PE=2 SV=2) HSP 1 Score: 341.658 bits (875), Expect = 4.419e-99 Identity = 181/363 (49.86%), Postives = 247/363 (68.04%), Query Frame = 1
Query: 1978 ARLDIAGTWSDTPPICYENGGCVLMFSISIDGKKPIGCRVKRIPEFKIVLVLG-LENPMVIE--CKEFEDFADYSSPNSPGALLKAAFFCTNILPLDYENANISLSEYLANTHHSGFVLQSWSDLPKGSGLGTSSILAGCILSALWKVVGLEHEVTSVLHAVLDLEQMLTTGGGWQDQVGGLCPGIKVATSKNQLPLQVETSPVKTPEGFIEKLEKHLVVVFTGKTRLARNMLQDVLRNWNARSPAIVKTARSLIENANETIQALEEGNLELIGKCLNDCWSNKKKMAHGCEPLVCRQIMDKIKPYVLGISLXXXXXXXFMCMITKQENAASIIKEQIESLKIPGKPTVHAATIDRQGLVVTI 3057
AR+D +G WSDTPP+ YE GG VL ++ +DG++PIG R +RIPE ++ L +G ++ M ++ C+ D DY P++PGALLKAAF C I+ + ++ + LSE L T GF L +WS+LP GSGLGTSSILAG L+AL + G +++HAVL LEQ+LTTGGGWQDQVGGL PGIKV S+ QLPL+VE V PEGF++KL HL++V+TGKTRLARN+LQDVLR+W AR PA+V+ A SL+ E + +G+L L+G+CL W KK MA GCEPL R++MD + P+V G SLAGAGGGGF+ ++TK+ ++ + + G ++H +D QGL + +
Sbjct: 713 ARVDFSGGWSDTPPLAYELGGAVLGLAVRVDGRRPIGARARRIPEPELWLAVGPRQDEMTVKIVCRCLADLRDYCQPHAPGALLKAAFICAGIV---HVHSELQLSEQLLRTFGGGFELHTWSELPHGSGLGTSSILAGTALAALQRAAGRVVGTEALIHAVLHLEQVLTTGGGWQDQVGGLMPGIKVGRSRAQLPLKVEVEEVTVPEGFVQKLNDHLLLVYTGKTRLARNLLQDVLRSWYARLPAVVQNAHSLVRQTEECAEGFRQGSLPLLGQCLTSYWEQKKLMAPGCEPLTVRRMMDVLAPHVHGQSLAGAGGGGFLYLLTKEPQQKEALEAVLAKTEGLGNYSIHLVEVDTQGLSLKL 1072 HSP 2 Score: 333.569 bits (854), Expect = 2.738e-96 Identity = 220/668 (32.93%), Postives = 319/668 (47.75%), Query Frame = 2
Query: 2 LASDSPPGFWICSCDRLINLPKEINIDWSEEDDVYLFTVPVNMETAANKHGVVKYNENELTIDDIIYKGSTERISVCKMKDEKVPIISGVVFLNTNFIEALLNVSIFHPLVLWTYLGVDSGSDNVGNRPFASEMQGVYRTDEKNIVLSLFFDILLCMASNVSKEDYVKGERSGVYGTVHFPDLNKVDVTLRS---NARNVLWDALNE--FSMQGVQLKGSEFHFISHDPQTLHKLYLQ-YPHHQTVQSI--RDITLTFKRKISSLDLNGEVESSVIINSLVPEDNVQRNTVILNSVIEENVKVGSNSFLINLCCEDFSVLKGGPGKTEISLPDDIVLESFYLNFDSNNVDKRTKRILLMFGIQDCLQTAACMENSTVFNQSWKTFFKRTTILPQEIWDPTIPENNKCLLNAKLFPVYYPRGEINILPLLWLHGSIEDPA-IMNLWRSSWRLSMKEIMDLSNAEEEFSWRKQLHFEIGKRQLEKALKERMNICLLPFFRTSIMNGFFENLLDALDNVIKTSDDASVTSRTFACIADVLGSKAQNRGGLRSGPAANHLWKKGLSLLEADKVIEAVDVMATQRKQWTKRHDLLVRSARHYEGAFQILVRKAVSTARQFISLTQKDAVPLQTWVTAEAPGRLDWSGGWSDTPPISFDQGGKVVTFALSLNNK 1978
L SPPG W+CS D L+++P I W + +P + A N HGV + L +D I Y+G+ I C D +VP++SGVVF + E LL + PL TYLG+DSG+ RP + LSLFFDIL CMA NV++ED++ G P+L + D + +AR LW L + +M V GS + S + L L L P Q V S L + S L G V+ L P +V+ + ++ + +G+ + L L G E+ D+VL+ + + T + G D + T N W FFKRT + ++WDP CL +A+LFPV +P E+ LLW+ ED + WR+SWRLS +++ + + R+ L F + L+ R ++ L P ++ G LL LD V + D V +R AC+ADVLG A+ RGGLRSGPAAN W + S LE + V+ +A +R +W R LLVR+ARHYEGA QIL+R+AV +A+ F+S Q + WV AE P R+D+SGGWSDTPP++++ GG V+ A+ ++ +
Sbjct: 138 LGPGSPPGVWVCSTDMLLSVPANPGISWDSFRGARVIALPGSPAYAQN-HGVYLTDPQGLVLD-IYYQGTEAEIQRCVRPDGRVPLVSGVVFFSVETAERLLATHVSPPLDACTYLGLDSGA-----RP---------------VQLSLFFDILHCMAENVTREDFLVGRP---------PELGQGDADVAGYLQSARAQLWRELRDQPLTMAYVS-SGSYSYMTSSASEFLLSLTLPGAPGAQIVHSQVEEQQLLAAGSSVVSCLLEGPVQ-------LGP------GSVLQHCHLQGPIHIGAGCLVTGLDTAHSKALHG----RELR---DLVLQGHHTRLHGSPGHAFT-----LVGRLDSWERQGA---GTYLNVPWSEFFKRTGVRAWDLWDPETLPAEYCLPSARLFPVLHPSRELGPQDLLWMLDHQEDGGEALRAWRASWRLSWEQLQPCLDRAATLASRRDLFFRQALHKARHVLEARQDLSLRPLIWAAVREGCPGPLLATLDQVAAGAGDPGVAARALACVADVLGCMAEGRGGLRSGPAANPEWMRPFSYLECGDLAAGVEALAQERDKWLSRPALLVRAARHYEGAGQILIRQAVMSAQHFVSTEQVELPGPGQWVVAECPARVDFSGGWSDTPPLAYELGGAVLGLAVRVDGR 745 The following BLAST results are available for this feature:
BLAST of TCONS_00035726 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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