TCONS_00035717 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035717
Unique NameTCONS_00035717
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length455

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035717 ID=TCONS_00035717|Name=TCONS_00035717|organism=Clytia hemisphaerica|type=transcript|length=455bp
GTGTTACTTTTAATTTAACGTTGAATGAAAAATACGCACAATCTTGGTAC
CTTAATTCCCTTAATCTTCGCGCACTATGTCACGCGAACATTTAACTGAT
GCGCTAATTAGTGACCACTATTTTTGGCTATTTTGGCCTTTACATGAGCT
TTGATGTAGATCTAGCGATAGTCATCAATCATTTTTATACTCTTCGTTGG
ATTTGTTATGGTTAACCATAACAAAACCATAAGAAAAACCGTAATtgtga
aatttaatgttgatatttttcttccatcggctttatattttttgatgctC
CAAATTCATGGGTTTCCGTctcaatttttaaagaaattgacCCTTTTGAT
GCAAAAGCATAGTTTTTCGTTCAGAAGAGAAAATGTACTTGTTACACTGA
agtatcttatataaaacatgACACAGTAAAGCTTATGTCAGCAAATCTTA
AAAAC
Run BLAST on NCBI

transcript from alignment at sc0001353:51969..52423

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035717 ID=TCONS_00035717|Name=TCONS_00035717|organism=Clytia hemisphaerica|type=transcript|length=455bp|location=Sequence derived from alignment at sc0001353:51969..52423 (Clytia hemisphaerica)
GTTTTTAAGATTTGCTGACATAAGCTTTACTGTGTcatgttttatataag
atactTCAGTGTAACAAGTACATTTTCTCTTCTGAACGAAAAACTATGCT
TTTGCATCAAAAGGgtcaatttctttaaaaattgagACGGAAACCCATGA
ATTTGGagcatcaaaaaatataaagccgatggaagaaaaatatcaacatt
aaatttcacaATTACGGTTTTTCTTATGGTTTTGTTATGGTTAACCATAA
CAAATCCAACGAAGAGTATAAAAATGATTGATGACTATCGCTAGATCTAC
ATCAAAGCTCATGTAAAGGCCAAAATAGCCAAAAATAGTGGTCACTAATT
AGCGCATCAGTTAAATGTTCGCGTGACATAGTGCGCGAAGATTAAGGGAA
TTAAGGTACCAAGATTGTGCGTATTTTTCATTCAACGTTAAATTAAAAGT
AACAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020941XLOC_020941Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035717-exon-sc0001353-1491911889:51969..52423TCONS_00035717-exon-sc0001353-1491911889:51969..52423Clytia hemisphaericaexon
TCONS_00035717-exon-sc0001353-1510915933:51969..52423TCONS_00035717-exon-sc0001353-1510915933:51969..52423Clytia hemisphaericaexon
TCONS_00035717-exon-sc0001353-1575043694:51969..52423TCONS_00035717-exon-sc0001353-1575043694:51969..52423Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001353supercontigsc0001353:51969..52423 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.197721	0.595835	1.25623	2.70505	0	0	0	0	0	0	0	0.0960487	0	0	0	0	0	0	0	0	0	0	0.165358	0.150334	0	0	0.197752	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035717 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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