TCONS_00035711 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035711
Unique NameTCONS_00035711
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length530

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035711 ID=TCONS_00035711|Name=TCONS_00035711|organism=Clytia hemisphaerica|type=transcript|length=530bp
TTTTTGATTTGTGAGAGGTGAAGTCGAACACATTGATTGCACACGTTGCA
TGATGTTGTTCACTTCAGTGCACTGAGCCTCAATATTACTTGGTTCGAAT
GCGTCATCGTCTGAATCTACTATCATCGGAATGTGATTATTTGTTGAGGT
TGAAGAAGCTGAACTAGCAACTGCGTCTTTAATTGGTtgtgattcaattg
tatttctTGACATGGCAACTAAATCTCTCAGCACGCCTGAACATGCTTCT
TGGTGATCCTTTCGTGTAGTACCAAGCATTTTCTCCATGCATTGACGACC
TTGCGTGGCGACTATTCTCGATTGTTTCTTTTTGTAGTGAACCTTTGCAA
CATCAGAGCTATGTTTTTGATCCTCTGATATTATCTCCTGTTCGGATCGA
GANNACCTGTTGTTGATACTAACATATAGTCACAACTTGGTTTCATAAGA
GGTCTAAAAAAGTCTGTGTATGTGTCCAAGACAGTAAATACTTCTTCAGT
TAAGATGAGAGTATCAAAAAGATATTTACC
Run BLAST on NCBI

transcript from alignment at sc0001353:32178..32707

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035711 ID=TCONS_00035711|Name=TCONS_00035711|organism=Clytia hemisphaerica|type=transcript|length=530bp|location=Sequence derived from alignment at sc0001353:32178..32707 (Clytia hemisphaerica)
GGTAAATATCTTTTTGATACTCTCATCTTAACTGAAGAAGTATTTACTGT
CTTGGACACATACACAGACTTTTTTAGACCTCTTATGAAACCAAGTTGTG
ACTATATGTTAGTATCAACAACAGGTNNTCTCGATCCGAACAGGAGATAA
TATCAGAGGATCAAAAACATAGCTCTGATGTTGCAAAGGTTCACTACAAA
AAGAAACAATCGAGAATAGTCGCCACGCAAGGTCGTCAATGCATGGAGAA
AATGCTTGGTACTACACGAAAGGATCACCAAGAAGCATGTTCAGGCGTGC
TGAGAGATTTAGTTGCCATGTCAagaaatacaattgaatcacaACCAATT
AAAGACGCAGTTGCTAGTTCAGCTTCTTCAACCTCAACAAATAATCACAT
TCCGATGATAGTAGATTCAGACGATGACGCATTCGAACCAAGTAATATTG
AGGCTCAGTGCACTGAAGTGAACAACATCATGCAACGTGTGCAATCAATG
TGTTCGACTTCACCTCTCACAAATCAAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020935XLOC_020935Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035711-exon-sc0001353-1491911889:32178..32707TCONS_00035711-exon-sc0001353-1491911889:32178..32707Clytia hemisphaericaexon
TCONS_00035711-exon-sc0001353-1510915933:32178..32707TCONS_00035711-exon-sc0001353-1510915933:32178..32707Clytia hemisphaericaexon
TCONS_00035711-exon-sc0001353-1575043694:32178..32707TCONS_00035711-exon-sc0001353-1575043694:32178..32707Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001353supercontigsc0001353:32178..32707 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.242998	1.02559	0.55027	0.231924	0.194498	0.706668	0.542598	0.742945	0.15391	0.609553	2.42715	0.0950987	3.095	1.44171	1.56864	4.84944	0.108742	0.253022	0	0.491771	0.234944	0	0	1.34653	0.830642	1.16494	3.08071	1.74008	48.4015	32.352
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035711 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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