TCONS_00035704 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035704
Unique NameTCONS_00035704
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length438

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035704 ID=TCONS_00035704|Name=TCONS_00035704|organism=Clytia hemisphaerica|type=transcript|length=438bp
GCAGCCAATCCAAATCATGTACAACTATATAGAATGCTTACCAGCTGGTA
CAATCTTTGTCATCTCTCAAAAGAAGTTCATAAAAGTGAGATCGTTTCCA
TCAAACACATCCCCACGTGCATTTGTGAAATACACGTACAGGAAAGATCG
AGTTCCATACCCGAAACCATTTTTGCACGCAATCTTCAACAGCTTTCCAG
AGCGAAAGCAGCGTACCCTATTCCTTCAGANCTGTTCGAGTTTGTGTTAC
TGTTATTTCCTTCAGAAATATAACCAACTGCTCCTACACGGAAGATTTCC
AGATAAAGAACCGAAACTTTGCTTTGGAGAGTGAAGTGAACAGTGGAAAG
ACAGGCTTGATGGCCCAATTTGAAGGTATACATATACAAATTCCTTCAAG
TTTGTGACAAGCCGAATTTTATTCCCAGTCGATTTCTG
Run BLAST on NCBI

protein sequence of TCONS_00035704-protein

>TCONS_00035704-protein ID=TCONS_00035704-protein|Name=TCONS_00035704-protein|organism=Clytia hemisphaerica|type=polypeptide|length=110bp
QPIQIMYNYIECLPAGTIFVISQKKFIKVRSFPSNTSPRAFVKYTYRKDR
VPYPKPFLHAIFNSFPERKQRTLFLQXCSSLCYCYFLQKYNQLLLHGRFP
DKEPKLCFGE
Run BLAST on NCBI

transcript from alignment at sc0001353:23331..24058-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035704 ID=TCONS_00035704|Name=TCONS_00035704|organism=Clytia hemisphaerica|type=transcript|length=728bp|location=Sequence derived from alignment at sc0001353:23331..24058- (Clytia hemisphaerica)
GCAGCCAATCCAAATCATGTACAACTATATAGAATGCTTACCAGCTGGTA
CAATCTTTGTCATCTCTCAAAAGAAGTTCATAAAAGTGAGATCGTTTCCA
TCAAACACATCCCCACGTGCATTTGTGAAATACACGTACAGGAAAGATCG
AGTTCCATACCCGAAACCATTTTTGCACGGTAATCAAATTTTAATGTAGA
TTTTATTTTGCAAAAATGAGCTTTTTAATTGAATCAATTGAACTTTTACA
GTTACACCACTACCTATACTTGAATACACTAAATTGCCTCTAAATTGAAG
GTTTTTTTATTTAAAATCTTTCTTTAATGCGGATCAATTCTTATTCACTT
TCAAAGATAGATGTTATCCTTAAATACTTTCTGTAATTCCATTCTCTATC
TAATTATTTCAGAGTAAAATTCCTGTTCGAGTTTGTGTTACTGTAAATTA
TTACCCTATTTTTATTTAGCAATCTTCAACAGCTTTCCAGAGCGAAAGCA
GCGTACCCTATTCCTTCAGANCTGTTCGAGTTTGTGTTACTGTTATTTCC
TTCAGAAATATAACCAACTGCTCCTACACGGAAGATTTCCAGATAAAGAA
CCGAAACTTTGCTTTGGAGAGTGAAGTGAACAGTGGAAAGACAGGCTTGA
TGGCCCAATTTGAAGGTATACATATACAAATTCCTTCAAGTTTGTGACAA
GCCGAATTTTATTCCCAGTCGATTTCTG

Coding sequence (CDS) from alignment at sc0001353:23331..24058-

>TCONS_00035704 ID=TCONS_00035704|Name=TCONS_00035704|organism=Clytia hemisphaerica|type=CDS|length=666bp|location=Sequence derived from alignment at sc0001353:23331..24058- (Clytia hemisphaerica)
CAATCTTCAACAGCTTTCCAGAGCGAAAGCAGCGTACCCTATTCCTTCAG
ANCTGTTCGAGTTTGTGTTACTGTTATTTCCTTCAGAAATATAACCAACT
GCTCCTACACGGAAGATTTCCAGATAAAGAACCGAAACTTTGCTTTGGAG
AGTGACAGCCAATCCAAATCATGTACAACTATATAGAATGCTTACCAGCT
GGTACAATCTTTGTCATCTCTCAAAAGAAGTTCATAAAAGTGAGATCGTT
TCCATCAAACACATCCCCACGTGCATTTGTGAAATACACGTACAGGAAAG
ATCGAGTTCCATACCCGAAACCATTTTTGCACGCAATCTTCAACAGCTTT
CCAGAGCGAAAGCAGCGTACCCTATTCCTTCAGANCTGTTCGAGTTTGTG
TTACTGTTATTTCCTTCAGAAATATAACCAACTGCTCCTACACGGAAGAT
TTCCAGATAAAGAACCGAAACTTTGCTTTGGAGAGTGACAGCCAATCCAA
ATCATGTACAACTATATAGAATGCTTACCAGCTGGTACAATCTTTGTCAT
CTCTCAAAAGAAGTTCATAAAAGTGAGATCGTTTCCATCAAACACATCCC
CACGTGCATTTGTGAAATACACGTACAGGAAAGATCGAGTTCCATACCCG
AAACCATTTTTGCACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020930XLOC_020930Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035704-proteinTCONS_00035704-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035704-exon-sc0001353-1575043694:23880..24058TCONS_00035704-exon-sc0001353-1575043694:23880..24058Clytia hemisphaericaexon
TCONS_00035704-exon-sc0001353-1575043694:23331..23589TCONS_00035704-exon-sc0001353-1575043694:23331..23589Clytia hemisphaericaexon
TCONS_00035704-exon-sc0001353-1510915933:23880..24058TCONS_00035704-exon-sc0001353-1510915933:23880..24058Clytia hemisphaericaexon
TCONS_00035704-exon-sc0001353-1510915933:23331..23589TCONS_00035704-exon-sc0001353-1510915933:23331..23589Clytia hemisphaericaexon
TCONS_00035704-exon-sc0001353-1491911889:23880..24058TCONS_00035704-exon-sc0001353-1491911889:23880..24058Clytia hemisphaericaexon
TCONS_00035704-exon-sc0001353-1491911889:23331..23589TCONS_00035704-exon-sc0001353-1491911889:23331..23589Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001353supercontigsc0001353:23331..24058 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.16894	2.20057	0.723068	0.265247	1.30882	1.88134	1.19508	4.47528	3.05751	4.54806	2.02133	2.7884	3.29716	2.49659	2.29545	2.15435	1.51671	2.1824	2.93778	3.97839	3.66907	2.11477	3.23694	3.46469	1.49702	1.18761	4.04713	1.45833	1.68871	1.49321
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035704 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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