TCONS_00035703 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035703
Unique NameTCONS_00035703
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length809

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035703 ID=TCONS_00035703|Name=TCONS_00035703|organism=Clytia hemisphaerica|type=transcript|length=809bp
GAGACTTCACTGTATGCAAATATTTCACTATTGTGCTGAAGTGCTCAAAG
AAATCCCAATATTTACCACCTGTTCTGATGCTGATCTCAGGAAAAAGACT
GACCGACATGAACGCGACAACAGTGACGAAGAGGATGAGGGTGCAGTGTA
CAACGATTTTGATGGTATGTTGGATAGCCTTATCCACGATAGTGACCTGG
AGGATGATCTTGCTTGCTCTTCACAACTTGTCGAAGACTCttccaatgaa
aatgaaagcttACTTGAAGATTCAAGTTTACAGGTGGACGACGACCAAGT
CGATTTCTATTTCCTTGCTTCGGATGAAGCTGACAGAAAACGCTGGGTTA
AGAAGCATCCACTATTTTCTGATGAAAAGATTCTATCGACTATGACAAGA
AAGTTAATCAACTGAAAAACTTATCAGACTCGCAATGGAATCACTGCCAA
TCTCTGAGGAGGATGTAAAATGGTACCAGATCCGAAGGAAATACGATTGG
GAAGAGGCAGATTCCTTTTATGAAGCGTGGCTGGCAAGAAATGTTCCTAA
ACCCCTTGAGATTCCTCGAATCGTTTACACCTCTGAAGATGACAGCTCTG
ACAGTGAAAACGAAGTTGAAGCTCACTCAACCCGAAGATGTGAAACCAGT
AAGTAGAGTTCGAGAAATTCAAAGCAAAATGCTTTAATGAGGTAATGGAA
ATTAGTGCTTCCGACACCGGCTCAACTGATTCTGAAGTGATTGAAATAAG
CGATTCAGAGGACGTAAAACCAAAGTTGGAAAAGTTCAAAAGTAACATCA
TTACCAACG
Run BLAST on NCBI

protein sequence of TCONS_00035703-protein

>TCONS_00035703-protein ID=TCONS_00035703-protein|Name=TCONS_00035703-protein|organism=Clytia hemisphaerica|type=polypeptide|length=137bp
RLHCMQIFHYCAEVLKEIPIFTTCSDADLRKKTDRHERDNSDEEDEGAVY
NDFDGMLDSLIHDSDLEDDLACSSQLVEDSSNENESLLEDSSLQVDDDQV
DFYFLASDEADRKRWVKKHPLFSDEKILSTMTRKLIN
Run BLAST on NCBI

transcript from alignment at sc0001353:21513..22535-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035703 ID=TCONS_00035703|Name=TCONS_00035703|organism=Clytia hemisphaerica|type=transcript|length=1023bp|location=Sequence derived from alignment at sc0001353:21513..22535- (Clytia hemisphaerica)
GAGACTTCACTGTATGCAAATATTTCACTATTGTGCTGAAGTGCTCAAAG
AAATCCCAATATTTACCACCTGTTCTGATGCTGATCTCAGGAAAAAGACT
GACCGACATGAACGCGACAACAGTGACGAAGAGGATGAGGGTGCAGTGTA
CAACGATTTTGATGGTATGTTGGATAGCCTTATCCACGATAGTGACCTGG
AGGATGATCTTGCTTGCTCTTCACAACTTGTCGAAGACTCTTCCAATGAA
AATGAAAGCTTACTTGAAGATTCAAGTTTACAGGTGGACGACGACCAAGT
CGATTTCTATTTCCTTGCTTCGGATGAAGCTGACAGAAAACGCTGGGTTA
AGAAGCATCCACTATTTTCTGATGAAAAGATTCTATCGACTATGACAAGA
AAGTTAATCAACTGAAAAACTTATCAGACTCGCAATGGAATCACTGCCAA
TCTCTGAGGAGGATGTAAAATGGTATTTGCAATATGATATGATAATGCGA
TGTATAAATATGATCATGAACGTTAAAGTAAAAGGAATGAGGATGTATTA
ATTGAATTAGAAAGTATCCCCTTAAGTAGGAGAAAAAGTTTGTTAAACTT
CAATTAATTAGCTTACTAATTAACTAATGAAAGAATTTATTGATTAACTA
ACTAATTAGTCAACTACTCGTCTTATACCACTTTAGGTACCAGATCCGAA
GGAAATACGATTGGGAAGAGGCAGATTCCTTTTATGAAGCGTGGCTGGCA
AGAAATGTTCCTAAACCCCTTGAGATTCCTCGAATCGTTTACACCTCTGA
AGATGACAGCTCTGACAGTGAAAACGAAGTTGAAGCTCACTCAACCCGAA
GATGTGAAACCAGTAAGTAGAGTTCGAGAAATTCAAAGCAAAATGCTTTA
ATGAGGTAATGGAAATTAGTGCTTCCGACACCGGCTCAACTGATTCTGAA
GTGATTGAAATAAGCGATTCAGAGGACGTAAAACCAAAGTTGGAAAAGTT
CAAAAGTAACATCATTACCAACG

Coding sequence (CDS) from alignment at sc0001353:21513..22535-

>TCONS_00035703 ID=TCONS_00035703|Name=TCONS_00035703|organism=Clytia hemisphaerica|type=CDS|length=414bp|location=Sequence derived from alignment at sc0001353:21513..22535- (Clytia hemisphaerica)
AGACTTCACTGTATGCAAATATTTCACTATTGTGCTGAAGTGCTCAAAGA
AATCCCAATATTTACCACCTGTTCTGATGCTGATCTCAGGAAAAAGACTG
ACCGACATGAACGCGACAACAGTGACGAAGAGGATGAGGGTGCAGTGTAC
AACGATTTTGATGGTATGTTGGATAGCCTTATCCACGATAGTGACCTGGA
GGATGATCTTGCTTGCTCTTCACAACTTGTCGAAGACTCTTCCAATGAAA
ATGAAAGCTTACTTGAAGATTCAAGTTTACAGGTGGACGACGACCAAGTC
GATTTCTATTTCCTTGCTTCGGATGAAGCTGACAGAAAACGCTGGGTTAA
GAAGCATCCACTATTTTCTGATGAAAAGATTCTATCGACTATGACAAGAA
AGTTAATCAACTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020929XLOC_020929Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035703-proteinTCONS_00035703-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035703-exon-sc0001353-1575043694:22064..22535TCONS_00035703-exon-sc0001353-1575043694:22064..22535Clytia hemisphaericaexon
TCONS_00035703-exon-sc0001353-1575043694:21513..21849TCONS_00035703-exon-sc0001353-1575043694:21513..21849Clytia hemisphaericaexon
TCONS_00035703-exon-sc0001353-1510915933:22064..22535TCONS_00035703-exon-sc0001353-1510915933:22064..22535Clytia hemisphaericaexon
TCONS_00035703-exon-sc0001353-1510915933:21513..21849TCONS_00035703-exon-sc0001353-1510915933:21513..21849Clytia hemisphaericaexon
TCONS_00035703-exon-sc0001353-1491911889:22064..22535TCONS_00035703-exon-sc0001353-1491911889:22064..22535Clytia hemisphaericaexon
TCONS_00035703-exon-sc0001353-1491911889:21513..21849TCONS_00035703-exon-sc0001353-1491911889:21513..21849Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001353supercontigsc0001353:21513..22535 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.77618	2.49994	1.18246	0.785996	3.4288	3.46562	5.54949	7.82255	4.37893	7.28287	9.62215	6.58195	5.98447	5.77177	3.37997	3.67799	3.01841	2.82079	6.8058	6.23169	2.74636	3.25217	3.55399	4.65574	4.19	4.56123	3.13983	1.22547	2.86317	2.00597
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035703 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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