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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035701 ID=TCONS_00035701|Name=TCONS_00035701|organism=Clytia hemisphaerica|type=transcript|length=1603bp
tgaagtaaaaatttctgatgataatttttaaaattacaaTTAAAATCGTT
TCCTTACCTGTAAAGAAATCTCTTCGTACACCACCTTGATCCACGCCGTG
TTCACCGTAAAAAATTATTCTTAATGCATTGTTTTTGCTTTGTCTCTTCA
TGAACGGTGAGCTCATTTTTTCGACAAATCATCGAAACAGTTTCCTCGTC
TGATTCTAATTGATGTTTCACTTTTAAAATCAATAGCCAACGAAGAAATT
ACATCTTTAATGGTTATTGCTACTTCAGTGTCCTCCATTCCAATGTCTTC
ACCATCTGAACAAGAAGTACTCTCATCATCATCACATACAACAGTGTTTG
CAAATTTTTCATCAGCACACTGAATGGCATGCTCCTCAACATCTGAACTC
GCGAAAAACTTTTTACATACAGGACAGCGTACTTCTCTTCTTCTGGAATG
AACTTGTCTGGCTTGAGTCGAGGTACCAGACGATAAGGAAAGAGCTTTTT
TCTCTGATGTTTTGAATCCACCCATGTGATTCTTTTCTCCACAGGTTGAT
GCATGATTGGTTTTAGGTAGGGTGTTAATTTTACTCCCACTGATAAGGTC
CATTGTAAAGTTTGAATGTTCAACTTCCACCATAGTCAAATATCTTGAGT
CAAATTTTTCAACCTTTTCGTTTGTGTCCACAATCAATTCATTATTGAGC
CCATGAAGCAAGTGGAAAAGTTCAGGTTCAGGAGAAAGACTTCCGACCCA
ATTGTACACATCTTCCATTTTGCTTTTTGACAGGAACAAACGATGTTTCA
TGCCTTGTGTTGGATGACGTACAAAAATCAAAGTGGAATCTTCCATCAAT
GATGGCTCCTCAGGAACATTATTTCGTCTGATATTCTGCCTTCTTATTTT
AGGAGTGGAATGCAAAATACCAATATCTAGTTTTGGTGATTTTGTTTTTg
gatcataaatctctttggaTTGCATCTCTTTGGTAGGGTCCCAATCTTCC
GATGTTTTCAAAATGAGCTTGTTGTGTTTcatcttttttaatttcaaaaa
gtcatcCAGAGTTGATGAAAGATTCATTAGTGTGTGATCTGATGCATGTA
ACATTGCCTTTAAAAGGTGTAAACTGCCTTTGTGTTTGCTCACTCCACCA
GGAAAATAAGTCTCCTTTTATTATagtaaatatttctttcataGGTGTTA
ATCGCTTAAAGGATTCTTTGCGGGCACCTCCACCACGACTAACAGGCACT
GTGGTATACTTTCCAAGACTAATGTTATAATGCTGCCATACAAATTCAAC
CATCACGGAATCTTGTTTACTGTCTTTTTTAGGTTGAGTTCTAGCTTGCG
AAACAAGTTCTGCCAGTTCAGCCAATTGTGTACTTCTATATTTCTCAATC
AAAAGCCTGCCATCTGCAAGTCCAATGCCAATATATTTAAAATCATTTAG
TGTTAGAAGGTGTATTGATTCAGCACAAACctataaaaaattatataatt
cTTAAATAGAatgtccaatttttcatagggtattaatttttgcaaatttt
tagtagtaaacaactttttttatttcttaaaagaatCCCCagtaaaacca
aag Run BLAST on NCBI protein sequence of TCONS_00035701-protein >TCONS_00035701-protein ID=TCONS_00035701-protein|Name=TCONS_00035701-protein|organism=Clytia hemisphaerica|type=polypeptide|length=313bp
MLHASDHTLMNLSSTLDDFLKLKKMKHNKLILKTSEDWDPTKEMQSKEIY
DPKTKSPKLDIGILHSTPKIRRQNIRRNNVPEEPSLMEDSTLIFVRHPTQ
GMKHRLFLSKSKMEDVYNWVGSLSPEPELFHLLHGLNNELIVDTNEKVEK
FDSRYLTMVEVEHSNFTMDLISGSKINTLPKTNHASTCGEKNHMGGFKTS
EKKALSLSSGTSTQARQVHSRRREVRCPVCKKFFASSDVEEHAIQCADEK
FANTVVCDDDESTSCSDGEDIGMEDTEVAITIKDVISSLAIDFKSETSIR
IRRGNCFDDLSKK Run BLAST on NCBI transcript from alignment at sc0001353:52656..54258+ Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035701 ID=TCONS_00035701|Name=TCONS_00035701|organism=Clytia hemisphaerica|type=transcript|length=1603bp|location=Sequence derived from alignment at sc0001353:52656..54258+ (Clytia hemisphaerica)
tgaagtaaaaatttctgatgataatttttaaaattacaaTTAAAATCGTT
TCCTTACCTGTAAAGAAATCTCTTCGTACACCACCTTGATCCACGCCGTG
TTCACCGTAAAAAATTATTCTTAATGCATTGTTTTTGCTTTGTCTCTTCA
TGAACGGTGAGCTCATTTTTTCGACAAATCATCGAAACAGTTTCCTCGTC
TGATTCTAATTGATGTTTCACTTTTAAAATCAATAGCCAACGAAGAAATT
ACATCTTTAATGGTTATTGCTACTTCAGTGTCCTCCATTCCAATGTCTTC
ACCATCTGAACAAGAAGTACTCTCATCATCATCACATACAACAGTGTTTG
CAAATTTTTCATCAGCACACTGAATGGCATGCTCCTCAACATCTGAACTC
GCGAAAAACTTTTTACATACAGGACAGCGTACTTCTCTTCTTCTGGAATG
AACTTGTCTGGCTTGAGTCGAGGTACCAGACGATAAGGAAAGAGCTTTTT
TCTCTGATGTTTTGAATCCACCCATGTGATTCTTTTCTCCACAGGTTGAT
GCATGATTGGTTTTAGGTAGGGTGTTAATTTTACTCCCACTGATAAGGTC
CATTGTAAAGTTTGAATGTTCAACTTCCACCATAGTCAAATATCTTGAGT
CAAATTTTTCAACCTTTTCGTTTGTGTCCACAATCAATTCATTATTGAGC
CCATGAAGCAAGTGGAAAAGTTCAGGTTCAGGAGAAAGACTTCCGACCCA
ATTGTACACATCTTCCATTTTGCTTTTTGACAGGAACAAACGATGTTTCA
TGCCTTGTGTTGGATGACGTACAAAAATCAAAGTGGAATCTTCCATCAAT
GATGGCTCCTCAGGAACATTATTTCGTCTGATATTCTGCCTTCTTATTTT
AGGAGTGGAATGCAAAATACCAATATCTAGTTTTGGTGATTTTGTTTTTg
gatcataaatctctttggaTTGCATCTCTTTGGTAGGGTCCCAATCTTCC
GATGTTTTCAAAATGAGCTTGTTGTGTTTcatcttttttaatttcaaaaa
gtcatcCAGAGTTGATGAAAGATTCATTAGTGTGTGATCTGATGCATGTA
ACATTGCCTTTAAAAGGTGTAAACTGCCTTTGTGTTTGCTCACTCCACCA
GGAAAATAAGTCTCCTTTTATTATagtaaatatttctttcataGGTGTTA
ATCGCTTAAAGGATTCTTTGCGGGCACCTCCACCACGACTAACAGGCACT
GTGGTATACTTTCCAAGACTAATGTTATAATGCTGCCATACAAATTCAAC
CATCACGGAATCTTGTTTACTGTCTTTTTTAGGTTGAGTTCTAGCTTGCG
AAACAAGTTCTGCCAGTTCAGCCAATTGTGTACTTCTATATTTCTCAATC
AAAAGCCTGCCATCTGCAAGTCCAATGCCAATATATTTAAAATCATTTAG
TGTTAGAAGGTGTATTGATTCAGCACAAACctataaaaaattatataatt
cTTAAATAGAatgtccaatttttcatagggtattaatttttgcaaatttt
tagtagtaaacaactttttttatttcttaaaagaatCCCCagtaaaacca
aag Coding sequence (CDS) from alignment at sc0001353:52656..54258+ >TCONS_00035701 ID=TCONS_00035701|Name=TCONS_00035701|organism=Clytia hemisphaerica|type=CDS|length=942bp|location=Sequence derived from alignment at sc0001353:52656..54258+ (Clytia hemisphaerica)
TCATTTTTTCGACAAATCATCGAAACAGTTTCCTCGTCTGATTCTAATTG
ATGTTTCACTTTTAAAATCAATAGCCAACGAAGAAATTACATCTTTAATG
GTTATTGCTACTTCAGTGTCCTCCATTCCAATGTCTTCACCATCTGAACA
AGAAGTACTCTCATCATCATCACATACAACAGTGTTTGCAAATTTTTCAT
CAGCACACTGAATGGCATGCTCCTCAACATCTGAACTCGCGAAAAACTTT
TTACATACAGGACAGCGTACTTCTCTTCTTCTGGAATGAACTTGTCTGGC
TTGAGTCGAGGTACCAGACGATAAGGAAAGAGCTTTTTTCTCTGATGTTT
TGAATCCACCCATGTGATTCTTTTCTCCACAGGTTGATGCATGATTGGTT
TTAGGTAGGGTGTTAATTTTACTCCCACTGATAAGGTCCATTGTAAAGTT
TGAATGTTCAACTTCCACCATAGTCAAATATCTTGAGTCAAATTTTTCAA
CCTTTTCGTTTGTGTCCACAATCAATTCATTATTGAGCCCATGAAGCAAG
TGGAAAAGTTCAGGTTCAGGAGAAAGACTTCCGACCCAATTGTACACATC
TTCCATTTTGCTTTTTGACAGGAACAAACGATGTTTCATGCCTTGTGTTG
GATGACGTACAAAAATCAAAGTGGAATCTTCCATCAATGATGGCTCCTCA
GGAACATTATTTCGTCTGATATTCTGCCTTCTTATTTTAGGAGTGGAATG
CAAAATACCAATATCTAGTTTTGGTGATTTTGTTTTTggatcataaatct
ctttggaTTGCATCTCTTTGGTAGGGTCCCAATCTTCCGATGTTTTCAAA
ATGAGCTTGTTGTGTTTcatcttttttaatttcaaaaagtcatcCAGAGT
TGATGAAAGATTCATTAGTGTGTGATCTGATGCATGTAACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035701-exon-sc0001353-1491911889:52656..54258 | TCONS_00035701-exon-sc0001353-1491911889:52656..54258 | Clytia hemisphaerica | exon |
| TCONS_00035701-exon-sc0001353-1510915933:52656..54258 | TCONS_00035701-exon-sc0001353-1510915933:52656..54258 | Clytia hemisphaerica | exon |
| TCONS_00035701-exon-sc0001353-1575043694:52656..54258 | TCONS_00035701-exon-sc0001353-1575043694:52656..54258 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001353 | supercontig | sc0001353:52656..54258 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR029071 | Ubiquitin-rel_dom |
Blast
The following BLAST results are available for this feature:
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