TCONS_00035700 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035700
Unique NameTCONS_00035700
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length944

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035700 ID=TCONS_00035700|Name=TCONS_00035700|organism=Clytia hemisphaerica|type=transcript|length=944bp
TTTCAATGAGGGATATAGctataaaaacattttacggTTGCTGCAAAGAC
TTGGTATTGTGATCAgCATGCGAAAGTTGAAAAGAATCTTATTCAGCCTC
GGGCTTGCAAGAAGAAAACCAAATTGTTCACTGGCCCATGTGTGTGATAC
CCTTATGACTGAAATTCAAGGAAGTGGAAGCTTGCTAGGATATAGATGTA
TGCATCAGAAATTGCGTGTAATCCATAACATTCAAATCAGCAGAAACAAT
GTGATGAATCTTCAAAAGGCTATCGACCCTATTGGTGTTGCTGAGCGCCG
TGCTAGGAAATTAAAGAGAAGAAGATACATCACACCTGGTCCTAACTATT
TGTGGCACCTGGATGGTTACGATAAGCTGAAACGATATGGGATATGTATA
CATGGTTGTATTGACGGcTATTCCAGAAAGTTGATCTGGTTGGAAGCAGC
ATCTACTAACAATTGTCCAGCTGTTGTGGCTGGCTTTTTTCTCAATCAAG
TTAAATCACTCAAAGGTACTGCGTTAAACGTTCGTGCAGACAGAGGAACA
GAAAACTCGAACATCGCTGGAATACAGAGGCTTTTTCGCTCAAACGACAA
TGACTTCCAAGCTATTGAAAAAAGTTTCCGATTTGGCAGGTCAACTTCAA
ATCAAAGAATTGAAGCATTTTGGTCTCAATTGAAGCGGTCACTGACTCAA
TGGTGGATGAACTTTTTTAAGGACATGATTGACGATGGAACATTTGATGA
ATCTGATGAAATTCAAAGggaatgtttaaaattttgttttctccaACTGA
TTCAAAAAGAGTTAGATGATTTCAAACTAATACACAACACTCACAGAAGA
AGTAACGAAACAACTGGTGGAAAGCCGGAACTTTTGTACAGCATGCCAAA
TTATTTCGGTAGAAAACGGAGGTGCACACTATGGCAGGAATACC
Run BLAST on NCBI

transcript from alignment at sc0001353:33966..39713+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035700 ID=TCONS_00035700|Name=TCONS_00035700|organism=Clytia hemisphaerica|type=transcript|length=5748bp|location=Sequence derived from alignment at sc0001353:33966..39713+ (Clytia hemisphaerica)
TTTCAATGAGGGATATAGctataaaaacattttacggTTGCTGCAAAGAC
TTGGTATTGTGATCAggtatataaaaataaatacattAAAGGTCAAGGTC
ATTGTTATTATAGAGTACTATAACCAGACTATAAAATTTTAAGTAATTAA
TTTCAATTACCagattaaattctaattaaggAAAAATTACatcatcaaat
ttgatatttagaTAAATTTTAATCCCTTGATctccttttttcttcttttt
acgaATTTGGGAGCTTCGAAAGGAGCTTAAATTAAAACAAGGTCTTAAAT
CAAGCAATCATTGCTGTTATTCTATTGTGATAAGCTAATTGATTATATAC
ATATAATTGGCTGACATGCTATGGTTTTTTTTAGCATGCGAAAGTTGAAA
AGAATCTTATTCAGCCTCGGGCTTGCAAGAAGAAAACCAAATTGTTCACT
GGCCCATGTGTGTGATACCCTTATGGTATGTTAATTTTGCAAGGTTTTTT
AAATTAACCATTTTTATTATATTACTTCCGAACTTAAGCTTCATATTCAG
TTATTTTCTTGCTACATaatataatttattttattgaagGGTGTTTTTTT
ACATGGGGCTggaattgttggtttgccgtcacccgaccctagattttgga
ggtgggtggGTCAgtcggaaaaaaaaattattttgaggatTTATGAAATC
TTTGTCCACACAGCTTTACAtgtaggtaattttgaatggaaaacGGAAGA
GCGCTAGCAGGGAATtcacgattcttatgcttgagacagaCAAGATATGA
GTCcttcttaaaaatggcaataaaatattttgggtTGGAAGTCCTGCCTG
GTTGGTTGTCAATCTATAAAGCAATTAACCCCATTCACCATATTTTTCTa
ccaatgaattttaaattcttCTAAATTTTCAATCAATAATCTATTTTCTA
CATAATATTACCCTGTTCTTTCTAGACTGAAATTCAAGGAAGTGGAAGCT
TGCTAGGATATAGATGTATGCATCAGAAATTGCGTGTAATCCATAACATT
CAAATCAGCAGGTAGAAATCAATCTTTTTAGTTTATTTCTTGCTTTGTGA
AGCCCTTTTTAAGGATTTCAATTTTCTGCAGTCTCTTAGAAGTGCTATCA
TCCAAACCTAAAGCTCGTAAATCATGCTTAGGTAAAATCTTATTTGATTT
CATTTACAATTCAGAAACAATGTGATGAATCTTCAAAAGGCTATCGACCC
TATTGGTGTTGCTGAGCGCCGTGCTAGGAAATTAAAGAGAAGAAGATACA
TCACACCTGTAAAGATTAAGTTTGAAACTATTATAATTTTGACATACTTT
TTGGTCTGTAATAAGGAGATTAGATTGTAAAACTTGTTCTCTTAAAATGT
CTTTAACGATTAAAAACCTTCAGGTTGGGTCAGAAATCATCCTAGTGAGG
ATAAATCAATATCCAAATATATAACAGTTTTCCAGTAAGATATAGCTTGC
AAGagcattttgcataaattaattattttgagCATAAGTGAACTTGTATT
TTTAGGGTCCTAACTATTTGTGGCACCTGGATGGTTACGATAAGCTGAAA
CGATATGGGATATGTATACATGGTTGTATTGACGGGTAATTTAGCAAGTT
TTGTTGATTAAAAAAGGGGAAATCTAAAATGGCGTGAATTAGCAGttaga
ttttaaaattaaagaaTCAAAATAATATCTAGTTCTAAAGTTCTATGGtt
aaaaatctttgaatttgATTTATTAAAAGGCTTTTGCCtgactttttgta
ctttttgaaaagctttacATTACataatattctcaacttcagttgagcta
gaatctgagaatgtctgtgtatctgtgtgtgtgtatgtgtgtgtgtctgt
caccaaaactttggggcaggctggagacttcaaaaacggtccgattgggc
tgaaatttttcacacttgatccttgggcaaatccctgggggtgttttttt
cattttttcaaaattttgatttttggggcctggggacgagtttttcgcca
aaacgcggctaaaactttggggcaggctggagacttcaaaaatggtccga
ttgggctgaaattttgcccccttgatccttgggcaaattcctgggttttt
tttttcattttttcaaaattttgatttttggggcctggggacgagttttt
cgccaaaacgaggctaaaactttggggcaggctggagacttcaaaaatgg
tccgattgggctgaaattttgcacacttgatccttgggcaaattcctggg
tttttttttttcattttttcaaaattttgatttttgggaccTTGGGACGA
GTTATTCGccaaacgaggctaaaactttggggcaggctggagacttcaaa
aatggtccgatttggctgaaattttgcacacttgatccttgggcacaTCC
CTGGGggcatttttttcacttttccaaaattttgatttttggggcctggc
gacgagtttttcgccaaaatgctataatttttcttaagccattaagttta
caattgggcctacgaatgatttcaaagatactgaagttgagccagtgcgg
ttagcacgttcgacagtttaTTATATAGATGAATAAAAGATAAATTAAGA
ccttatttaattttttgaattttatttttgtagcTATTCCAGAAAGTTGA
TCTGGTTGGAAGCAGCATCTACTAACAATTGTCCAGCTGTTGTGGCTGGC
TTTTTTCTCAATCAAGTTAAATCACTCAAAGGTACGTTTATTTCTTCAAT
TAAAAAAGGTAAATCATTTAACAAGGTTTTGAAAATAACGACGGTCAACT
TTGATGACTCTTTGTTGCATTAGGAGAAAAAGCATTTCTCGATGAGAATT
TTCACTGAATACAAATATTGAATTTTTGTTGTTATCTTTAAGAATTATAC
AAATATTACAAAACTTTTTCTGAATCGCCCGGTGTAGATTTTAGAGATAC
TGTATGAAACTTGTGTCCCCAGATACTGGGTCTCAAGATCCTCTATGggt
gtttttcatattttggaaATTCTCATTTTTGGGGCCTTGGGACGAGGAGG
TAAAGGAGGTAAATTCTTTTTGGCAGCCCGGAAACTGGACGGGTCCGAtc
agctgaaactttttacACTTGTTTCTTGAATTATATACAGCNTTTGGGGC
CTTGGGACGAGGAGGTAAAGGAGGTAAATTCTTTTTGGCAGCCCGGAAAC
TGGACGGGTCCGAtcagctgaaactttttacACTTGTTTCTTAAATTATA
TACAGTACCCTGACTAAAACTTAAGATAACCTTAAGGTGATCCAGGCTGT
TAGCACGTTAGACAGTACTAGAAGGAGTTGTAATTATTTCGTTGAGAAAT
TATAATAAAGATTATTATAATATTAACTTTTAGGTACTGCGTTAAACGTT
CGTGCAGACAGAGGAACAGAAAACTCGAACATCGCTGGAATACAGAGGCT
TTTTCGCTCAAACGACAATGACTTCCAAGCTATTGAAAAAAGTTTCCGAT
TTGGCAGGTCAACTTCAAATCAAGTAAACTCCATtttatatttaaatatt
ttttagtttttaggcaATGTCCCTTTACCAAATAGTTTACAAATTTCCAT
TGAAATGGAAAAATACATTCAATATGAATGTATAGATGAAAGATAATCCT
TCAATGTTTGAATTGCTTACAAGGAATAAGgatttaaatgaaaaatcttt
ctacCCTTTGATACAATGTGCGGCTAGATCTTTCCAGAATAACCTCAATC
TCAATTACGTCCATAAATTAAAGGGTGNCTAGATCTTTCCAGAATAACCT
CCATCTCAATTACGTCCATAAATTAAAGGGTGTTTGATGTACTGAAGTTA
AAATTCATTACAATAATGAATTTCTAGCttaaatacagggtgtccgaaAA
AATGTCAGAAGACTGCTATGGGTAGAAAGTCTTTGTGTGTGTATCACaaa
caaaatccgaaaaatgaACTTGGATGTTAAGTTATTTGAGTAAACGTTAA
TAAATGTTTTTATGATAAAACATATTACAGACGCAGTAACCGAGTCATGA
TCTACATACGTTCAAATTCTAATGGCAACTGTACTATAGGTTTGTAACGG
TATACAAGGTTTCCGAGCACGCAATCTCCCATCCCGATTCCAGGAAACCA
GCCACGTTATCTACTCTTCGATcatttttttcgtgtttttttttatgaat
ataattttatttcttttttttattacgCACGTTACTTATTTTTATAGATC
GTCGACCAAAAAAATGCGAGCGTGTTTATTGGTCAAGAGCATTGACataa
atgcaatattttgttGCATTAAGAAAAACTTTGCGATACACACACAAACA
CTTTCTACTCGNTCAAGAGCATTGACATAAATGCAATATTTCATATTTAT
GCTGTTGCATTAAGAAAAACTTTGCGATACACACACCAACACTTTCTACT
CATAGCAGTGGTCTGATCGGATAcattttttccggacaccctgtagagaA
TAATTGACTTTCCAATTTAGAGAATTGAAGCATTTTGGTCTCAATTGAAG
CGGTCACTGACTCAATGGTGGATGAACTTTTTTAAGGTAATTTATTCCCT
CATTGTTTCCCAACAACCCAGAgaattttggctgaaatcttttgtaattt
tttcttgcATTAGTACCTGGTAGAGTTTCTTCTGACTTTAAATCCTGAAA
TTGACAGAATTGCTTTTTGTggggataatttttttaagagaTACCAAAAT
CGAGCCAGTTCGATGAACAAGGTTGACAGTTTTGACCAATCATACTGCAG
CTGTTTTTTATTACATGTATATGAATTTTCCAGGACATGATTGACGATGG
AACATTTGATGAATCTGATGAAATTCAAAGGTACACGAGAATATAAATTA
TTGTCAAtagaaaaacaatagaaaatggATTCAATTTAATggatttaaat
tttgaaaaatgaaagctCTGCTCGCCCTCTGAATGAATTGAATGAATTCT
AACCGGTGAAGAGTTTTGACCTAAATTCAATGGACTTggatttttgacca
aaaattatGACCAGACCAGCAATAGCGAGTGGCCACGgatttgaaaagtg
aaattaaaatgtaacatttaaaagaaaatgagaTCCAGATAAACTGAATT
GACCCCCACGCGaacttttttaaatcattttcaagtCTTTTGAATTGTTa
taattctaaaaatgtttGCATTTAAAAGAGCAATTTTACACAAATAacga
ttttaaaaatataaattacaTTCCGCCAATAGTACTTGTTATCTACCGTA
ACGCTCTCCTGTTCTCCTTTTAAGTAAAATTAATGGtacaattatttatt
tttagggaatgtttaaaattttgttttctccaACTGATTCAAAAAGAGTT
AGATGATTTCAAACTAATACACAACACTCACAGAAGAAGTAACGAAACAA
CTGGTGGAAAGCCGGAACTTTTGTACAGCATGCCAAATTATTTCGGTAAG
CTGTAACATTTGGTTACATTCGGTACTTAAGTCCATCGAAAAACTATGTG
GAAACTTCACATTTAATGTTGTAGGTCCTTCAAATGGGTCTAATTGCCTA
TTTTTTGGCCATTTAGGCCTACTTTGTAGCGCTGTAATTTATCACTTGCA
AAACATAAACAGGTAGAAAACGGAGGTGCACACTATGGCAGGAATACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020927XLOC_020927Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035700-exon-sc0001353-1491911889:33966..34031TCONS_00035700-exon-sc0001353-1491911889:33966..34031Clytia hemisphaericaexon
TCONS_00035700-exon-sc0001353-1510915933:33966..34031TCONS_00035700-exon-sc0001353-1510915933:33966..34031Clytia hemisphaericaexon
TCONS_00035700-exon-sc0001353-1575043694:33966..34031TCONS_00035700-exon-sc0001353-1575043694:33966..34031Clytia hemisphaericaexon
TCONS_00035700-exon-sc0001353-1491911889:34350..34440TCONS_00035700-exon-sc0001353-1491911889:34350..34440Clytia hemisphaericaexon
TCONS_00035700-exon-sc0001353-1510915933:34350..34440TCONS_00035700-exon-sc0001353-1510915933:34350..34440Clytia hemisphaericaexon
TCONS_00035700-exon-sc0001353-1575043694:34350..34440TCONS_00035700-exon-sc0001353-1575043694:34350..34440Clytia hemisphaericaexon
TCONS_00035700-exon-sc0001353-1491911889:34941..35026TCONS_00035700-exon-sc0001353-1491911889:34941..35026Clytia hemisphaericaexon
TCONS_00035700-exon-sc0001353-1510915933:34941..35026TCONS_00035700-exon-sc0001353-1510915933:34941..35026Clytia hemisphaericaexon
TCONS_00035700-exon-sc0001353-1575043694:34941..35026TCONS_00035700-exon-sc0001353-1575043694:34941..35026Clytia hemisphaericaexon
TCONS_00035700-exon-sc0001353-1491911889:35180..35273TCONS_00035700-exon-sc0001353-1491911889:35180..35273Clytia hemisphaericaexon
TCONS_00035700-exon-sc0001353-1510915933:35180..35273TCONS_00035700-exon-sc0001353-1510915933:35180..35273Clytia hemisphaericaexon
TCONS_00035700-exon-sc0001353-1575043694:35180..35273TCONS_00035700-exon-sc0001353-1575043694:35180..35273Clytia hemisphaericaexon
TCONS_00035700-exon-sc0001353-1491911889:35521..35600TCONS_00035700-exon-sc0001353-1491911889:35521..35600Clytia hemisphaericaexon
TCONS_00035700-exon-sc0001353-1510915933:35521..35600TCONS_00035700-exon-sc0001353-1510915933:35521..35600Clytia hemisphaericaexon
TCONS_00035700-exon-sc0001353-1575043694:35521..35600TCONS_00035700-exon-sc0001353-1575043694:35521..35600Clytia hemisphaericaexon
TCONS_00035700-exon-sc0001353-1491911889:36649..36746TCONS_00035700-exon-sc0001353-1491911889:36649..36746Clytia hemisphaericaexon
TCONS_00035700-exon-sc0001353-1510915933:36649..36746TCONS_00035700-exon-sc0001353-1510915933:36649..36746Clytia hemisphaericaexon
TCONS_00035700-exon-sc0001353-1575043694:36649..36746TCONS_00035700-exon-sc0001353-1575043694:36649..36746Clytia hemisphaericaexon
TCONS_00035700-exon-sc0001353-1491911889:37399..37538TCONS_00035700-exon-sc0001353-1491911889:37399..37538Clytia hemisphaericaexon
TCONS_00035700-exon-sc0001353-1510915933:37399..37538TCONS_00035700-exon-sc0001353-1510915933:37399..37538Clytia hemisphaericaexon
TCONS_00035700-exon-sc0001353-1575043694:37399..37538TCONS_00035700-exon-sc0001353-1575043694:37399..37538Clytia hemisphaericaexon
TCONS_00035700-exon-sc0001353-1491911889:38536..38601TCONS_00035700-exon-sc0001353-1491911889:38536..38601Clytia hemisphaericaexon
TCONS_00035700-exon-sc0001353-1510915933:38536..38601TCONS_00035700-exon-sc0001353-1510915933:38536..38601Clytia hemisphaericaexon
TCONS_00035700-exon-sc0001353-1575043694:38536..38601TCONS_00035700-exon-sc0001353-1575043694:38536..38601Clytia hemisphaericaexon
TCONS_00035700-exon-sc0001353-1491911889:38849..38895TCONS_00035700-exon-sc0001353-1491911889:38849..38895Clytia hemisphaericaexon
TCONS_00035700-exon-sc0001353-1510915933:38849..38895TCONS_00035700-exon-sc0001353-1510915933:38849..38895Clytia hemisphaericaexon
TCONS_00035700-exon-sc0001353-1575043694:38849..38895TCONS_00035700-exon-sc0001353-1575043694:38849..38895Clytia hemisphaericaexon
TCONS_00035700-exon-sc0001353-1491911889:39371..39510TCONS_00035700-exon-sc0001353-1491911889:39371..39510Clytia hemisphaericaexon
TCONS_00035700-exon-sc0001353-1510915933:39371..39510TCONS_00035700-exon-sc0001353-1510915933:39371..39510Clytia hemisphaericaexon
TCONS_00035700-exon-sc0001353-1575043694:39371..39510TCONS_00035700-exon-sc0001353-1575043694:39371..39510Clytia hemisphaericaexon
TCONS_00035700-exon-sc0001353-1491911889:39678..39713TCONS_00035700-exon-sc0001353-1491911889:39678..39713Clytia hemisphaericaexon
TCONS_00035700-exon-sc0001353-1510915933:39678..39713TCONS_00035700-exon-sc0001353-1510915933:39678..39713Clytia hemisphaericaexon
TCONS_00035700-exon-sc0001353-1575043694:39678..39713TCONS_00035700-exon-sc0001353-1575043694:39678..39713Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001353supercontigsc0001353:33966..39713 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.78647	3.66454	0.628661	0	0.0249592	5.38878	2.78863	10.107	22.616	22.0418	16.4814	17.5355	9.16737	11.3474	6.96535	9.09143	8.91877	11.9113	14.7669	12.4447	9.1751	12.7681	7.13832	0.459688	1.39193	3.65326	5.269	6.51622	5.55781	6.01321
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035700 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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