TCONS_00035699 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035699
Unique NameTCONS_00035699
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1400

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035699 ID=TCONS_00035699|Name=TCONS_00035699|organism=Clytia hemisphaerica|type=transcript|length=1400bp
ATTTCAATGAGGGATATAGctataaaaacattttacggTTGCTGCAAAGA
CTTGGTATTGTGATCAgCATGCGAAAGTTGAAAAGAATCTTATTCAGCCT
CGGGCTTGCAAGAAGAAAACCAAATTGTTCACTGGCCCATGTGTGTGATA
CCCTTATGACTGAAATTCAAGGAAGTGGAAGCTTGCTAGGATATAGATGT
ATGCATCAGAAATTGCGTGTAATCCATAACATTCAAATCAGCAGGTAGAA
ATCAATCTTTTTAGTTTATTTCTTGCTTTGTGAAGCCCTTTTTAAGGATT
TCAATTTTCTGCAGTCTCTTAGAAGTGCTATCATCCAAACCTAAAGCTCG
TAAATCATGCTTAGGTAAAATCTTATTTGATTTCATTTACAATTCAGAAA
CAATGTGATGAATCTTCAAAAGGCTATCGACCCTATTGGTGTTGCTGAGC
GCCGTGCTAGGAAATTAAAGAGAAGAAGATACATCACACCTGTAAAGATT
AAGTTTGAAACTATTATAATTTTGACATACTTTTTGGTCTGTAATAAGGA
GATTAGATTGTAAAACTTGTTCTCTTAAAATGTCTTTAACGATTAAAAAC
CTTCAGGTTGGGTCAGAAATCATCCTAGTGAGGATAAATCAATATCCAAA
TATATAACAGTTTTCCAGTAAGATATAGCTTGCAAGagcattttgcataa
attaattattttgagCATAAGTGAACTTGTATTTTTAGGGTCCTAACTAT
TTGTGGCACCTGGATGGTTACGATAAGCTGAAACGATATGGGATATGTAT
ACATGGTTGTATTGACGGcTATTCCAGAAAGTTGATCTGGTTGGAAGCAG
CATCTACTAACAATTGTCCAGCTGTTGTGGCTGGCTTTTTTCTCAATCAA
GTTAAATCACTCAAAGGTACTGCGTTAAACGTTCGTGCAGACAGAGGAAC
AGAAAACTCGAACATCGCTGGAATACAGAGGCTTTTTCGCTCAAACGACA
ATGACTTCCAAGCTATTGAAAAAAGTTTCCGATTTGGCAGGTCAACTTCA
AATCAAAGAATTGAAGCATTTTGGTCTCAATTGAAGCGGTCACTGACTCA
ATGGTGGATGAACTTTTTTAAGGACATGATTGACGATGGAACATTTGATG
AATCTGATGAAATTCAAAGggaatgtttaaaattttgttttctccaACTG
ATTCAAAAAGAGTTAGATGATTTCAAACTAATACACAACACTCACAGAAG
AAGTAACGAAACAACTGGTGGAAAGCCGGAACTTTTGTACAGCATGCCAA
ATTATTTCGGTGCCACCGACTTTATGTGGAATGTTCGTGAAGCTGAAATA
AATGTTGCTGAAGCGTATTGTCGTACACCGAACGTTTTTGGTTGTggaaa
Run BLAST on NCBI

transcript from alignment at sc0001353:33965..39859+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035699 ID=TCONS_00035699|Name=TCONS_00035699|organism=Clytia hemisphaerica|type=transcript|length=5895bp|location=Sequence derived from alignment at sc0001353:33965..39859+ (Clytia hemisphaerica)
ATTTCAATGAGGGATATAGctataaaaacattttacggTTGCTGCAAAGA
CTTGGTATTGTGATCAggtatataaaaataaatacattAAAGGTCAAGGT
CATTGTTATTATAGAGTACTATAACCAGACTATAAAATTTTAAGTAATTA
ATTTCAATTACCagattaaattctaattaaggAAAAATTACatcatcaaa
tttgatatttagaTAAATTTTAATCCCTTGATctccttttttcttctttt
tacgaATTTGGGAGCTTCGAAAGGAGCTTAAATTAAAACAAGGTCTTAAA
TCAAGCAATCATTGCTGTTATTCTATTGTGATAAGCTAATTGATTATATA
CATATAATTGGCTGACATGCTATGGTTTTTTTTAGCATGCGAAAGTTGAA
AAGAATCTTATTCAGCCTCGGGCTTGCAAGAAGAAAACCAAATTGTTCAC
TGGCCCATGTGTGTGATACCCTTATGGTATGTTAATTTTGCAAGGTTTTT
TAAATTAACCATTTTTATTATATTACTTCCGAACTTAAGCTTCATATTCA
GTTATTTTCTTGCTACATaatataatttattttattgaagGGTGTTTTTT
TACATGGGGCTggaattgttggtttgccgtcacccgaccctagattttgg
aggtgggtggGTCAgtcggaaaaaaaaattattttgaggatTTATGAAAT
CTTTGTCCACACAGCTTTACAtgtaggtaattttgaatggaaaacGGAAG
AGCGCTAGCAGGGAATtcacgattcttatgcttgagacagaCAAGATATG
AGTCcttcttaaaaatggcaataaaatattttgggtTGGAAGTCCTGCCT
GGTTGGTTGTCAATCTATAAAGCAATTAACCCCATTCACCATATTTTTCT
accaatgaattttaaattcttCTAAATTTTCAATCAATAATCTATTTTCT
ACATAATATTACCCTGTTCTTTCTAGACTGAAATTCAAGGAAGTGGAAGC
TTGCTAGGATATAGATGTATGCATCAGAAATTGCGTGTAATCCATAACAT
TCAAATCAGCAGGTAGAAATCAATCTTTTTAGTTTATTTCTTGCTTTGTG
AAGCCCTTTTTAAGGATTTCAATTTTCTGCAGTCTCTTAGAAGTGCTATC
ATCCAAACCTAAAGCTCGTAAATCATGCTTAGGTAAAATCTTATTTGATT
TCATTTACAATTCAGAAACAATGTGATGAATCTTCAAAAGGCTATCGACC
CTATTGGTGTTGCTGAGCGCCGTGCTAGGAAATTAAAGAGAAGAAGATAC
ATCACACCTGTAAAGATTAAGTTTGAAACTATTATAATTTTGACATACTT
TTTGGTCTGTAATAAGGAGATTAGATTGTAAAACTTGTTCTCTTAAAATG
TCTTTAACGATTAAAAACCTTCAGGTTGGGTCAGAAATCATCCTAGTGAG
GATAAATCAATATCCAAATATATAACAGTTTTCCAGTAAGATATAGCTTG
CAAGagcattttgcataaattaattattttgagCATAAGTGAACTTGTAT
TTTTAGGGTCCTAACTATTTGTGGCACCTGGATGGTTACGATAAGCTGAA
ACGATATGGGATATGTATACATGGTTGTATTGACGGGTAATTTAGCAAGT
TTTGTTGATTAAAAAAGGGGAAATCTAAAATGGCGTGAATTAGCAGttag
attttaaaattaaagaaTCAAAATAATATCTAGTTCTAAAGTTCTATGGt
taaaaatctttgaatttgATTTATTAAAAGGCTTTTGCCtgactttttgt
actttttgaaaagctttacATTACataatattctcaacttcagttgagct
agaatctgagaatgtctgtgtatctgtgtgtgtgtatgtgtgtgtgtctg
tcaccaaaactttggggcaggctggagacttcaaaaacggtccgattggg
ctgaaatttttcacacttgatccttgggcaaatccctgggggtgtttttt
tcattttttcaaaattttgatttttggggcctggggacgagtttttcgcc
aaaacgcggctaaaactttggggcaggctggagacttcaaaaatggtccg
attgggctgaaattttgcccccttgatccttgggcaaattcctgggtttt
ttttttcattttttcaaaattttgatttttggggcctggggacgagtttt
tcgccaaaacgaggctaaaactttggggcaggctggagacttcaaaaatg
gtccgattgggctgaaattttgcacacttgatccttgggcaaattcctgg
gtttttttttttcattttttcaaaattttgatttttgggaccTTGGGACG
AGTTATTCGccaaacgaggctaaaactttggggcaggctggagacttcaa
aaatggtccgatttggctgaaattttgcacacttgatccttgggcacaTC
CCTGGGggcatttttttcacttttccaaaattttgatttttggggcctgg
cgacgagtttttcgccaaaatgctataatttttcttaagccattaagttt
acaattgggcctacgaatgatttcaaagatactgaagttgagccagtgcg
gttagcacgttcgacagtttaTTATATAGATGAATAAAAGATAAATTAAG
AccttatttaattttttgaattttatttttgtagcTATTCCAGAAAGTTG
ATCTGGTTGGAAGCAGCATCTACTAACAATTGTCCAGCTGTTGTGGCTGG
CTTTTTTCTCAATCAAGTTAAATCACTCAAAGGTACGTTTATTTCTTCAA
TTAAAAAAGGTAAATCATTTAACAAGGTTTTGAAAATAACGACGGTCAAC
TTTGATGACTCTTTGTTGCATTAGGAGAAAAAGCATTTCTCGATGAGAAT
TTTCACTGAATACAAATATTGAATTTTTGTTGTTATCTTTAAGAATTATA
CAAATATTACAAAACTTTTTCTGAATCGCCCGGTGTAGATTTTAGAGATA
CTGTATGAAACTTGTGTCCCCAGATACTGGGTCTCAAGATCCTCTATGgg
tgtttttcatattttggaaATTCTCATTTTTGGGGCCTTGGGACGAGGAG
GTAAAGGAGGTAAATTCTTTTTGGCAGCCCGGAAACTGGACGGGTCCGAt
cagctgaaactttttacACTTGTTTCTTGAATTATATACAGCNTTTGGGG
CCTTGGGACGAGGAGGTAAAGGAGGTAAATTCTTTTTGGCAGCCCGGAAA
CTGGACGGGTCCGAtcagctgaaactttttacACTTGTTTCTTAAATTAT
ATACAGTACCCTGACTAAAACTTAAGATAACCTTAAGGTGATCCAGGCTG
TTAGCACGTTAGACAGTACTAGAAGGAGTTGTAATTATTTCGTTGAGAAA
TTATAATAAAGATTATTATAATATTAACTTTTAGGTACTGCGTTAAACGT
TCGTGCAGACAGAGGAACAGAAAACTCGAACATCGCTGGAATACAGAGGC
TTTTTCGCTCAAACGACAATGACTTCCAAGCTATTGAAAAAAGTTTCCGA
TTTGGCAGGTCAACTTCAAATCAAGTAAACTCCATtttatatttaaatat
tttttagtttttaggcaATGTCCCTTTACCAAATAGTTTACAAATTTCCA
TTGAAATGGAAAAATACATTCAATATGAATGTATAGATGAAAGATAATCC
TTCAATGTTTGAATTGCTTACAAGGAATAAGgatttaaatgaaaaatctt
tctacCCTTTGATACAATGTGCGGCTAGATCTTTCCAGAATAACCTCAAT
CTCAATTACGTCCATAAATTAAAGGGTGNCTAGATCTTTCCAGAATAACC
TCCATCTCAATTACGTCCATAAATTAAAGGGTGTTTGATGTACTGAAGTT
AAAATTCATTACAATAATGAATTTCTAGCttaaatacagggtgtccgaaA
AAATGTCAGAAGACTGCTATGGGTAGAAAGTCTTTGTGTGTGTATCACaa
acaaaatccgaaaaatgaACTTGGATGTTAAGTTATTTGAGTAAACGTTA
ATAAATGTTTTTATGATAAAACATATTACAGACGCAGTAACCGAGTCATG
ATCTACATACGTTCAAATTCTAATGGCAACTGTACTATAGGTTTGTAACG
GTATACAAGGTTTCCGAGCACGCAATCTCCCATCCCGATTCCAGGAAACC
AGCCACGTTATCTACTCTTCGATcatttttttcgtgtttttttttatgaa
tataattttatttcttttttttattacgCACGTTACTTATTTTTATAGAT
CGTCGACCAAAAAAATGCGAGCGTGTTTATTGGTCAAGAGCATTGACata
aatgcaatattttgttGCATTAAGAAAAACTTTGCGATACACACACAAAC
ACTTTCTACTCGNTCAAGAGCATTGACATAAATGCAATATTTCATATTTA
TGCTGTTGCATTAAGAAAAACTTTGCGATACACACACCAACACTTTCTAC
TCATAGCAGTGGTCTGATCGGATAcattttttccggacaccctgtagaga
ATAATTGACTTTCCAATTTAGAGAATTGAAGCATTTTGGTCTCAATTGAA
GCGGTCACTGACTCAATGGTGGATGAACTTTTTTAAGGTAATTTATTCCC
TCATTGTTTCCCAACAACCCAGAgaattttggctgaaatcttttgtaatt
ttttcttgcATTAGTACCTGGTAGAGTTTCTTCTGACTTTAAATCCTGAA
ATTGACAGAATTGCTTTTTGTggggataatttttttaagagaTACCAAAA
TCGAGCCAGTTCGATGAACAAGGTTGACAGTTTTGACCAATCATACTGCA
GCTGTTTTTTATTACATGTATATGAATTTTCCAGGACATGATTGACGATG
GAACATTTGATGAATCTGATGAAATTCAAAGGTACACGAGAATATAAATT
ATTGTCAAtagaaaaacaatagaaaatggATTCAATTTAATggatttaaa
ttttgaaaaatgaaagctCTGCTCGCCCTCTGAATGAATTGAATGAATTC
TAACCGGTGAAGAGTTTTGACCTAAATTCAATGGACTTggatttttgacc
aaaaattatGACCAGACCAGCAATAGCGAGTGGCCACGgatttgaaaagt
gaaattaaaatgtaacatttaaaagaaaatgagaTCCAGATAAACTGAAT
TGACCCCCACGCGaacttttttaaatcattttcaagtCTTTTGAATTGTT
ataattctaaaaatgtttGCATTTAAAAGAGCAATTTTACACAAATAacg
attttaaaaatataaattacaTTCCGCCAATAGTACTTGTTATCTACCGT
AACGCTCTCCTGTTCTCCTTTTAAGTAAAATTAATGGtacaattatttat
ttttagggaatgtttaaaattttgttttctccaACTGATTCAAAAAGAGT
TAGATGATTTCAAACTAATACACAACACTCACAGAAGAAGTAACGAAACA
ACTGGTGGAAAGCCGGAACTTTTGTACAGCATGCCAAATTATTTCGGTAA
GCTGTAACATTTGGTTACATTCGGTACTTAAGTCCATCGAAAAACTATGT
GGAAACTTCACATTTAATGTTGTAGGTCCTTCAAATGGGTCTAATTGCCT
ATTTTTTGGCCATTTAGGCCTACTTTGTAGCGCTGTAATTTATCACTTGC
AAAACATAAACAGGTAGAAAACGGAGGTGCACACTATGGCAGGAATACCT
TACgagttttaaaagctctatgtTATAATCTATGATTGGCTATTCGCAAT
TCAGGTGCCACCGACTTTATGTGGAATGTTCGTGAAGCTGAAATAAATGT
TGCTGAAGCGTATTGTCGTACACCGAACGTTTTTGGTTGTggaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020927XLOC_020927Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035699-exon-sc0001353-1491911889:33965..34031TCONS_00035699-exon-sc0001353-1491911889:33965..34031Clytia hemisphaericaexon
TCONS_00035699-exon-sc0001353-1510915933:33965..34031TCONS_00035699-exon-sc0001353-1510915933:33965..34031Clytia hemisphaericaexon
TCONS_00035699-exon-sc0001353-1575043694:33965..34031TCONS_00035699-exon-sc0001353-1575043694:33965..34031Clytia hemisphaericaexon
TCONS_00035699-exon-sc0001353-1491911889:34350..34440TCONS_00035699-exon-sc0001353-1491911889:34350..34440Clytia hemisphaericaexon
TCONS_00035699-exon-sc0001353-1510915933:34350..34440TCONS_00035699-exon-sc0001353-1510915933:34350..34440Clytia hemisphaericaexon
TCONS_00035699-exon-sc0001353-1575043694:34350..34440TCONS_00035699-exon-sc0001353-1575043694:34350..34440Clytia hemisphaericaexon
TCONS_00035699-exon-sc0001353-1491911889:34941..35600TCONS_00035699-exon-sc0001353-1491911889:34941..35600Clytia hemisphaericaexon
TCONS_00035699-exon-sc0001353-1510915933:34941..35600TCONS_00035699-exon-sc0001353-1510915933:34941..35600Clytia hemisphaericaexon
TCONS_00035699-exon-sc0001353-1575043694:34941..35600TCONS_00035699-exon-sc0001353-1575043694:34941..35600Clytia hemisphaericaexon
TCONS_00035699-exon-sc0001353-1491911889:36649..36746TCONS_00035699-exon-sc0001353-1491911889:36649..36746Clytia hemisphaericaexon
TCONS_00035699-exon-sc0001353-1510915933:36649..36746TCONS_00035699-exon-sc0001353-1510915933:36649..36746Clytia hemisphaericaexon
TCONS_00035699-exon-sc0001353-1575043694:36649..36746TCONS_00035699-exon-sc0001353-1575043694:36649..36746Clytia hemisphaericaexon
TCONS_00035699-exon-sc0001353-1491911889:37399..37538TCONS_00035699-exon-sc0001353-1491911889:37399..37538Clytia hemisphaericaexon
TCONS_00035699-exon-sc0001353-1510915933:37399..37538TCONS_00035699-exon-sc0001353-1510915933:37399..37538Clytia hemisphaericaexon
TCONS_00035699-exon-sc0001353-1575043694:37399..37538TCONS_00035699-exon-sc0001353-1575043694:37399..37538Clytia hemisphaericaexon
TCONS_00035699-exon-sc0001353-1491911889:38536..38601TCONS_00035699-exon-sc0001353-1491911889:38536..38601Clytia hemisphaericaexon
TCONS_00035699-exon-sc0001353-1510915933:38536..38601TCONS_00035699-exon-sc0001353-1510915933:38536..38601Clytia hemisphaericaexon
TCONS_00035699-exon-sc0001353-1575043694:38536..38601TCONS_00035699-exon-sc0001353-1575043694:38536..38601Clytia hemisphaericaexon
TCONS_00035699-exon-sc0001353-1491911889:38849..38895TCONS_00035699-exon-sc0001353-1491911889:38849..38895Clytia hemisphaericaexon
TCONS_00035699-exon-sc0001353-1510915933:38849..38895TCONS_00035699-exon-sc0001353-1510915933:38849..38895Clytia hemisphaericaexon
TCONS_00035699-exon-sc0001353-1575043694:38849..38895TCONS_00035699-exon-sc0001353-1575043694:38849..38895Clytia hemisphaericaexon
TCONS_00035699-exon-sc0001353-1491911889:39371..39510TCONS_00035699-exon-sc0001353-1491911889:39371..39510Clytia hemisphaericaexon
TCONS_00035699-exon-sc0001353-1510915933:39371..39510TCONS_00035699-exon-sc0001353-1510915933:39371..39510Clytia hemisphaericaexon
TCONS_00035699-exon-sc0001353-1575043694:39371..39510TCONS_00035699-exon-sc0001353-1575043694:39371..39510Clytia hemisphaericaexon
TCONS_00035699-exon-sc0001353-1491911889:39769..39859TCONS_00035699-exon-sc0001353-1491911889:39769..39859Clytia hemisphaericaexon
TCONS_00035699-exon-sc0001353-1510915933:39769..39859TCONS_00035699-exon-sc0001353-1510915933:39769..39859Clytia hemisphaericaexon
TCONS_00035699-exon-sc0001353-1575043694:39769..39859TCONS_00035699-exon-sc0001353-1575043694:39769..39859Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001353supercontigsc0001353:33965..39859 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.630523	1.17613	0.27612	0.597839	0.440668	0.139457	0.0806224	0	0.358919	0.535214	0.073702	1.01383	0.0906852	0.048655	0.272948	0	0.370967	0.273267	0.866718	0.0761205	0.802607	1.02325	0	0.161178	0	0.158683	0.108144	0.383549	0.267702	0.173134
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035699 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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