TCONS_00035695 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035695
Unique NameTCONS_00035695
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length762

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035695 ID=TCONS_00035695|Name=TCONS_00035695|organism=Clytia hemisphaerica|type=transcript|length=762bp
GCATCGAGCGACGGCTATACCAAGCGATTCGACGACATTACAACTGGTTT
TCCCCGGGTGGCACGATGTATAGACGATTCGTTGCTCTGGGATGATGATA
TATCCAAGTCATTCTGGCACACAATCTCGTACATGGAACTATGTAGTCGA
AACGGTATAGTATTCAACCCAAAGAAGTTCCATTTCTGCAAGGATACTGT
AGAATTCGCCGGCTTCGACATAACAACCGTTGGATTTAAACCGGCGGGAA
GACTCATCGACAACATAAAGAACTTTCCATCACCCACTAGCATAACCGGG
GTGAGGTCATGGTTTGGCTTAGTTAACCAAGTCGCGTATGCTTTCGCCCA
AGCCCCTACTATGACACCCTTTCGAGAACTTTTAAATAAACGAGGCAGAT
TCTATTGGGACGATACCCTAGACTCTATTTTCCAGGAGTCCAAACGCAAA
ATAATTAATTCTATCGAGGAGGGTGTTCGGACATTCGAAGTTAACCGTCC
CACATGGCTCGCAACGGACTGGAGCAAAACCGCTGTTGGATTCACCCTTG
CTCAAAAACATTGCGACTGTATCGAGATAGACAATCTCTTTTGTGGTGAA
AACCATTGGCGGACAAACTACGTTGGATCACGTTTTACTAAAGATTCAGA
ATCTCGTTATGCACCCATTGAAGGCGAGGCATTAGCTTTATGGTTTGGCC
TTACCAATTGTCGTATGTTTGTTCTTGGCTGCCCGAAATTGATAGTCACA
GTCGACCACAAG
Run BLAST on NCBI

transcript from alignment at sc0001352:72508..73269

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035695 ID=TCONS_00035695|Name=TCONS_00035695|organism=Clytia hemisphaerica|type=transcript|length=762bp|location=Sequence derived from alignment at sc0001352:72508..73269 (Clytia hemisphaerica)
CTTGTGGTCGACTGTGACTATCAATTTCGGGCAGCCAAGAACAAACATAC
GACAATTGGTAAGGCCAAACCATAAAGCTAATGCCTCGCCTTCAATGGGT
GCATAACGAGATTCTGAATCTTTAGTAAAACGTGATCCAACGTAGTTTGT
CCGCCAATGGTTTTCACCACAAAAGAGATTGTCTATCTCGATACAGTCGC
AATGTTTTTGAGCAAGGGTGAATCCAACAGCGGTTTTGCTCCAGTCCGTT
GCGAGCCATGTGGGACGGTTAACTTCGAATGTCCGAACACCCTCCTCGAT
AGAATTAATTATTTTGCGTTTGGACTCCTGGAAAATAGAGTCTAGGGTAT
CGTCCCAATAGAATCTGCCTCGTTTATTTAAAAGTTCTCGAAAGGGTGTC
ATAGTAGGGGCTTGGGCGAAAGCATACGCGACTTGGTTAACTAAGCCAAA
CCATGACCTCACCCCGGTTATGCTAGTGGGTGATGGAAAGTTCTTTATGT
TGTCGATGAGTCTTCCCGCCGGTTTAAATCCAACGGTTGTTATGTCGAAG
CCGGCGAATTCTACAGTATCCTTGCAGAAATGGAACTTCTTTGGGTTGAA
TACTATACCGTTTCGACTACATAGTTCCATGTACGAGATTGTGTGCCAGA
ATGACTTGGATATATCATCATCCCAGAGCAACGAATCGTCTATACATCGT
GCCACCCGGGGAAAACCAGTTGTAATGTCGTCGAATCGCTTGGTATAGCC
GTCGCTCGATGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020925XLOC_020925Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035695-exon-sc0001352-1491911889:72508..73269TCONS_00035695-exon-sc0001352-1491911889:72508..73269Clytia hemisphaericaexon
TCONS_00035695-exon-sc0001352-1510915933:72508..73269TCONS_00035695-exon-sc0001352-1510915933:72508..73269Clytia hemisphaericaexon
TCONS_00035695-exon-sc0001352-1575043694:72508..73269TCONS_00035695-exon-sc0001352-1575043694:72508..73269Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001352supercontigsc0001352:72508..73269 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.192465	0.0625613	0.31974	0.355333	1.29775	0.683666	0.494889	0.694963	0.378436	0.152852	0.519981	0.213635	0.725348	0.753281	0.122797	0.938263	0.240805	0.0493634	0.0681982	0.142729	0.248115	0.363065	0.0735589	0.267503	0.344402	0.268633	0.175939	0.28165	0	0.0725488
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035695 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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