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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035692 ID=TCONS_00035692|Name=TCONS_00035692|organism=Clytia hemisphaerica|type=transcript|length=2385bp
aaagTGTAATCTGTGAAGAATTTTTTGGCCGATAAGATATAGAGTAGAGA
GGGAGGAGTCTGAGCCTTTTTCGTTCTTAAGCTGTTAAAAGAAGTAACAT
CTTATGTGGACAATCCCTAaagttttagaataattttttttttcagaaat
tttgaaatctttaattATTCTGCTGGTGGCCTTCATAAATGAAATGACAA
CTGCTAATTACCAACAGAAATGGAGGGATGGGATAAGAATGGAAGAAGAG
TTTTTGAAAACCAgtgatgatgaaatctcgagcaATATGGACCAAAGTGA
TAATGATTACGATCAAATTGACCAGAACATAAATAATGTATCAGGAAACG
AATCTGATATTTCTATTTTGGACGAAGATGAAGCAGCAAGTAGTGCAGAT
TGTCAAAGCAGTTCAGAGGATGAAATGaattttgctttcaatgatTATCC
ACCTTTTTCTGAGCAGCTGAGAAAGTGGGCTGTTAAAAATGATTGCAGAA
GCGGTGGAGTGACAGAGTTATTGAAAATATTGCGTCTTAATGGTCACGAT
GATCTACCAAAAGATTCACGTACACTATTGAAAACCCCTAGGGAGGTTGC
TGTGGAAGAAAAATGTGGAGGCAGCTATATCTATCTTGGaataaaaaggg
gaatttcgAGATGTTTGGAAGATAATCCAAATTATAATTCACCAACCATT
AAATTAATTGTAAATGCTGACGGCATACCTTTGTTCAAATCAACAGGGCT
TGACCTTTGGCCTATTCTGGGTATGTTTGTGTATCCCCGTCCATTTGTAA
TTTCATTATTTACTGGCCAAGGGAAGCCAGATAGCCCAGAGGAGTTTTTA
GAGGATTTTTTGAATGAGTACAGGGATTTAaaagaaaatggtttttttac
TGAAGACAATAGGCATTTCAGTGTAGTTTTATGGTGTATGACATGTGATG
CTCCAGCTCGGCAATTTCTGAAATGTATTAAAGGTCATGGAGGATACTTT
GCATGCGAGAGATGCACTATCAAAGGACAAAGAGTTGAAAATAGGACTGT
ATTCCTTTCAACTGACGAACCCAGAAGAACTGATAGAagttttgacaatt
ttgaataTGAAGGAGACCACCAACATTTCCCGAGCCCATTGATCGGTTCA
GGAATAAAGTGTGTAGAGGATTTTGCTCTAGATTACATGCATCTTGTTTG
CCTTGGTGTAATGAAAAGACTTCTTCAGTATTTAAAAGAAGGTCCTCGTA
CTTGTCGCTTGTCACAAGGTCAGTTGACACGCATCTCTCAGCTATTGCAA
AACTATCGAGGAAAAATGCCATCAGAATTTGCAAGACAACCCAGAGGACT
TGACCACTTGAGCAGATTTAAAGCAACAGAGTTCAGATCTTTTCTTTTGT
ATTATGGATGTGTTGTACTAAGAGACATACTTCCACAACCAGCATACAAA
CATTTTCTCTCTTTAGTCACAGCACTTCGAATTTTGCTTGATGAGAATGA
TGATCATCGCAATCACCATCTAAACTTTGCAAAGgaacttttagaatttt
tttctgataatGCATCTATTTATTACACTGAAACCTTTACTGTCTACAAT
GTCCACAGCTTAATCCATTTGCCAGATGATGCTCGTAGATTTAACGTATG
CTTGGataaagtttcttgttttccaTTTGAAAACCaccttcaaattttga
agaaattaatACGCAATGCAACGAACCCACTTGTCTCCACTGTTAAGCGA
ATAGCGGAAATAGAAAGTGCTGGAAAAAAATCCTCATACAAGTGCATTTT
AACTAAAGTTTCTAAAATCCCAAGAGACAGCTGGTTTTTATTGGAAAACG
AAGATGTTGTTTGTGTGAAGGAAATTCAGTCAAGTACAAGTTTCCTAtgt
aaagtttacaaaaaaaatgaattaacgGATTATTTTGTTCATCCACCTTG
TCAGTCAAGTACAGttgggattttttttctttcaaatgtcaaaatgaACA
ACAACAAAGATGAGCGACACACCATCAATAAGACATCAATGAAACGTAAA
ATTGTCTGTCTTGCGGTGGAAACCGGCAATGTTTTGATAAGCTTGCTGAA
TGATGTTAAATTTGATGAGGGTTTAGGAGCGTATTTTTGATCAGTGAGAA
ATGTTGTCAAATAAATGTTGAATAAATGATTTAAATAGATATACTTCTCA
TGTTTTTTGTATGGAAGGCAATATCCAGAGGAGGActattttaatagttt
ttgtaaTTCCTAATAAATTGTTAATCAGGTTTCTTAGAGAGAAATTCAAG
AGACTGGAtaattaaacttaaaaaattgcTTAGGCTGTAAGgattttata
tcaattttattcATAGATTCTGTTCCACTATTTTT Run BLAST on NCBI protein sequence of TCONS_00035692-protein >TCONS_00035692-protein ID=TCONS_00035692-protein|Name=TCONS_00035692-protein|organism=Clytia hemisphaerica|type=polypeptide|length=648bp
MTTANYQQKWRDGIRMEEEFLKTSDDEISSNMDQSDNDYDQIDQNINNVS
GNESDISILDEDEAASSADCQSSSEDEMNFAFNDYPPFSEQLRKWAVKND
CRSGGVTELLKILRLNGHDDLPKDSRTLLKTPREVAVEEKCGGSYIYLGI
KRGISRCLEDNPNYNSPTIKLIVNADGIPLFKSTGLDLWPILGMFVYPRP
FVISLFTGQGKPDSPEEFLEDFLNEYRDLKENGFFTEDNRHFSVVLWCMT
CDAPARQFLKCIKGHGGYFACERCTIKGQRVENRTVFLSTDEPRRTDRSF
DNFEYEGDHQHFPSPLIGSGIKCVEDFALDYMHLVCLGVMKRLLQYLKEG
PRTCRLSQGQLTRISQLLQNYRGKMPSEFARQPRGLDHLSRFKATEFRSF
LLYYGCVVLRDILPQPAYKHFLSLVTALRILLDENDDHRNHHLNFAKELL
EFFSDNASIYYTETFTVYNVHSLIHLPDDARRFNVCLDKVSCFPFENHLQ
ILKKLIRNATNPLVSTVKRIAEIESAGKKSSYKCILTKVSKIPRDSWFLL
ENEDVVCVKEIQSSTSFLCKVYKKNELTDYFVHPPCQSSTVGIFFLSNVK
MNNNKDERHTINKTSMKRKIVCLAVETGNVLISLLNDVKFDEGLGAYF Run BLAST on NCBI transcript from alignment at sc0001352:64137..66521 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035692 ID=TCONS_00035692|Name=TCONS_00035692|organism=Clytia hemisphaerica|type=transcript|length=2385bp|location=Sequence derived from alignment at sc0001352:64137..66521 (Clytia hemisphaerica)
AAAAATAGTGGAACAGAATCTATgaataaaattgatataaaatcCTTACA
GCCTAAgcaattttttaagtttaattaTCCAGTCTCTTGAATTTCTCTCT
AAGAAACCTGATTAACAATTTATTAGGAAttacaaaaactattaaaatag
TCCTCCTCTGGATATTGCCTTCCATACAAAAAACATGAGAAGTATATCTA
TTTAAATCATTTATTCAACATTTATTTGACAACATTTCTCACTGATCAAA
AATACGCTCCTAAACCCTCATCAAATTTAACATCATTCAGCAAGCTTATC
AAAACATTGCCGGTTTCCACCGCAAGACAGACAATTTTACGTTTCATTGA
TGTCTTATTGATGGTGTGTCGCTCATCTTTGTTGTTGTtcattttgacat
ttgaaagaaaaaaaatcccaaCTGTACTTGACTGACAAGGTGGATGAACA
AAATAATCcgttaattcattttttttgtaaactttacaTAGGAAACTTGT
ACTTGACTGAATTTCCTTCACACAAACAACATCTTCGTTTTCCAATAAAA
ACCAGCTGTCTCTTGGGATTTTAGAAACTTTAGTTAAAATGCACTTGTAT
GAGGATTTTTTTCCAGCACTTTCTATTTCCGCTATTCGCTTAACAGTGGA
GACAAGTGGGTTCGTTGCATTGCGTattaatttcttcaaaatttgaaggt
GGTTTTCAAAtggaaaacaagaaactttatCCAAGCATACGTTAAATCTA
CGAGCATCATCTGGCAAATGGATTAAGCTGTGGACATTGTAGACAGTAAA
GGTTTCAGTGTAATAAATAGATGCattatcagaaaaaaattctaaaagtt
cCTTTGCAAAGTTTAGATGGTGATTGCGATGATCATCATTCTCATCAAGC
AAAATTCGAAGTGCTGTGACTAAAGAGAGAAAATGTTTGTATGCTGGTTG
TGGAAGTATGTCTCTTAGTACAACACATCCATAATACAAAAGAAAAGATC
TGAACTCTGTTGCTTTAAATCTGCTCAAGTGGTCAAGTCCTCTGGGTTGT
CTTGCAAATTCTGATGGCATTTTTCCTCGATAGTTTTGCAATAGCTGAGA
GATGCGTGTCAACTGACCTTGTGACAAGCGACAAGTACGAGGACCTTCTT
TTAAATACTGAAGAAGTCTTTTCATTACACCAAGGCAAACAAGATGCATG
TAATCTAGAGCAAAATCCTCTACACACTTTATTCCTGAACCGATCAATGG
GCTCGGGAAATGTTGGTGGTCTCCTTCAtattcaaaattgtcaaaactTC
TATCAGTTCTTCTGGGTTCGTCAGTTGAAAGGAATACAGTCCTATTTTCA
ACTCTTTGTCCTTTGATAGTGCATCTCTCGCATGCAAAGTATCCTCCATG
ACCTTTAATACATTTCAGAAATTGCCGAGCTGGAGCATCACATGTCATAC
ACCATAAAACTACACTGAAATGCCTATTGTCTTCAgtaaaaaaaccattt
tctttTAAATCCCTGTACTCATTCAAAAAATCCTCTAAAAACTCCTCTGG
GCTATCTGGCTTCCCTTGGCCAGTAAATAATGAAATTACAAATGGACGGG
GATACACAAACATACCCAGAATAGGCCAAAGGTCAAGCCCTGTTGATTTG
AACAAAGGTATGCCGTCAGCATTTACAATTAATTTAATGGTTGGTGAATT
ATAATTTGGATTATCTTCCAAACATCTcgaaattcccctttttattCCAA
GATAGATATAGCTGCCTCCACATTTTTCTTCCACAGCAACCTCCCTAGGG
GTTTTCAATAGTGTACGTGAATCTTTTGGTAGATCATCGTGACCATTAAG
ACGCAATATTTTCAATAACTCTGTCACTCCACCGCTTCTGCAATCATTTT
TAACAGCCCACTTTCTCAGCTGCTCAGAAAAAGGTGGATAatcattgaaa
gcaaaattCATTTCATCCTCTGAACTGCTTTGACAATCTGCACTACTTGC
TGCTTCATCTTCGTCCAAAATAGAAATATCAGATTCGTTTCCTGATACAT
TATTTATGTTCTGGTCAATTTGATCGTAATCATTATCACTTTGGTCCATA
TtgctcgagatttcatcatcacTGGTTTTCAAAAACTCTTCTTCCATTCT
TATCCCATCCCTCCATTTCTGTTGGTAATTAGCAGTTGTCATTTCATTTA
TGAAGGCCACCAGCAGAATaattaaagatttcaaaatttctgaaaaaaaa
aattattctaaaacttTAGGGATTGTCCACATAAGATGTTACTTCTTTTA
ACAGCTTAAGAACGAAAAAGGCTCAGACTCCTCCCTCTCTACTCTATATC
TTATCGGCCAAAAAATTCTTCACAGATTACActtt Coding sequence (CDS) from alignment at sc0001352:64137..66521 >TCONS_00035692 ID=TCONS_00035692|Name=TCONS_00035692|organism=Clytia hemisphaerica|type=CDS|length=1947bp|location=Sequence derived from alignment at sc0001352:64137..66521 (Clytia hemisphaerica)
TCAAAAATACGCTCCTAAACCCTCATCAAATTTAACATCATTCAGCAAGC
TTATCAAAACATTGCCGGTTTCCACCGCAAGACAGACAATTTTACGTTTC
ATTGATGTCTTATTGATGGTGTGTCGCTCATCTTTGTTGTTGTtcatttt
gacatttgaaagaaaaaaaatcccaaCTGTACTTGACTGACAAGGTGGAT
GAACAAAATAATCcgttaattcattttttttgtaaactttacaTAGGAAA
CTTGTACTTGACTGAATTTCCTTCACACAAACAACATCTTCGTTTTCCAA
TAAAAACCAGCTGTCTCTTGGGATTTTAGAAACTTTAGTTAAAATGCACT
TGTATGAGGATTTTTTTCCAGCACTTTCTATTTCCGCTATTCGCTTAACA
GTGGAGACAAGTGGGTTCGTTGCATTGCGTattaatttcttcaaaatttg
aaggtGGTTTTCAAAtggaaaacaagaaactttatCCAAGCATACGTTAA
ATCTACGAGCATCATCTGGCAAATGGATTAAGCTGTGGACATTGTAGACA
GTAAAGGTTTCAGTGTAATAAATAGATGCattatcagaaaaaaattctaa
aagttcCTTTGCAAAGTTTAGATGGTGATTGCGATGATCATCATTCTCAT
CAAGCAAAATTCGAAGTGCTGTGACTAAAGAGAGAAAATGTTTGTATGCT
GGTTGTGGAAGTATGTCTCTTAGTACAACACATCCATAATACAAAAGAAA
AGATCTGAACTCTGTTGCTTTAAATCTGCTCAAGTGGTCAAGTCCTCTGG
GTTGTCTTGCAAATTCTGATGGCATTTTTCCTCGATAGTTTTGCAATAGC
TGAGAGATGCGTGTCAACTGACCTTGTGACAAGCGACAAGTACGAGGACC
TTCTTTTAAATACTGAAGAAGTCTTTTCATTACACCAAGGCAAACAAGAT
GCATGTAATCTAGAGCAAAATCCTCTACACACTTTATTCCTGAACCGATC
AATGGGCTCGGGAAATGTTGGTGGTCTCCTTCAtattcaaaattgtcaaa
actTCTATCAGTTCTTCTGGGTTCGTCAGTTGAAAGGAATACAGTCCTAT
TTTCAACTCTTTGTCCTTTGATAGTGCATCTCTCGCATGCAAAGTATCCT
CCATGACCTTTAATACATTTCAGAAATTGCCGAGCTGGAGCATCACATGT
CATACACCATAAAACTACACTGAAATGCCTATTGTCTTCAgtaaaaaaac
cattttctttTAAATCCCTGTACTCATTCAAAAAATCCTCTAAAAACTCC
TCTGGGCTATCTGGCTTCCCTTGGCCAGTAAATAATGAAATTACAAATGG
ACGGGGATACACAAACATACCCAGAATAGGCCAAAGGTCAAGCCCTGTTG
ATTTGAACAAAGGTATGCCGTCAGCATTTACAATTAATTTAATGGTTGGT
GAATTATAATTTGGATTATCTTCCAAACATCTcgaaattcccctttttat
tCCAAGATAGATATAGCTGCCTCCACATTTTTCTTCCACAGCAACCTCCC
TAGGGGTTTTCAATAGTGTACGTGAATCTTTTGGTAGATCATCGTGACCA
TTAAGACGCAATATTTTCAATAACTCTGTCACTCCACCGCTTCTGCAATC
ATTTTTAACAGCCCACTTTCTCAGCTGCTCAGAAAAAGGTGGATAatcat
tgaaagcaaaattCATTTCATCCTCTGAACTGCTTTGACAATCTGCACTA
CTTGCTGCTTCATCTTCGTCCAAAATAGAAATATCAGATTCGTTTCCTGA
TACATTATTTATGTTCTGGTCAATTTGATCGTAATCATTATCACTTTGGT
CCATATtgctcgagatttcatcatcacTGGTTTTCAAAAACTCTTCTTCC
ATTCTTATCCCATCCCTCCATTTCTGTTGGTAATTAGCAGTTGTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035692-exon-sc0001352-1491911889:64137..66521 | TCONS_00035692-exon-sc0001352-1491911889:64137..66521 | Clytia hemisphaerica | exon |
| TCONS_00035692-exon-sc0001352-1510915933:64137..66521 | TCONS_00035692-exon-sc0001352-1510915933:64137..66521 | Clytia hemisphaerica | exon |
| TCONS_00035692-exon-sc0001352-1575043694:64137..66521 | TCONS_00035692-exon-sc0001352-1575043694:64137..66521 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001352 | supercontig | sc0001352:64137..66521 . |
Blast
The following BLAST results are available for this feature:
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