TCONS_00035691 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035691
Unique NameTCONS_00035691
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length851

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035691 ID=TCONS_00035691|Name=TCONS_00035691|organism=Clytia hemisphaerica|type=transcript|length=851bp
GCCGAGAGCAGGTGTATGTAAGAAGATAAAaagctgaactttgctttttt
ctgatttcatcAACAAGGAGTGGTTTGAAATTCAGTTCACTTTTGGTTTA
GTGAAAATCAGACGGGGTCCAAAGGTGCATTCGTTCAAGCACGTCAAAAA
GTTGTCAAAGCTTGCGGTTTCACGAAGCATTTCACACAAAAGTCATAATT
TCTTTAATAATATANCGTCAAAAAATTGTCAAAGCTTGCGGTTTCACGAA
GCATTTCACACAAAAGTCATAATTTCTTTAATGATATAATTGATAACTGT
TGAAAATCTTTAGAGATTTGTCGCACGAATCATTCGGAAAACGTTTTACC
GTTGGTTTAAAGTACAAAGGTCAAACCATGTAAGTATAGTGAGctattaa
aaataatttgtctCTGCTTGTTTGTTTgcaatccgattaaagtatctTTT
TTGTTGGCCGTGGAACATTCCTTGTTATAGGCGGactaaagattttcttt
tgtgtaCTTATGGCACGGAAAATTaccagtagtttttccagatgACCCTA
TAAAAGGTTGAGCCTGTCGATTAAATATTTCATCTTCTCTAGAAGAAGGA
AACGACAGGACAGACAACACACGGAAGAAAAACGACATTTATCTCACGCG
TCCCGAGCACGTACGTCGATCCGTCAATCAAAATACTTCACACTGACAAC
ACGCCGcgggaaaaaggaaaaagaaaatacttctaggctagaaaaatcaa
aacaaacagtcACACACACCACCAAAGAAACTATCCACAAGAAtggtaaa
actttttttcaaccttttttccTTTTGATAACTCTCTTTTTATAGGTTTA
C
Run BLAST on NCBI

transcript from alignment at sc0001352:30592..31442

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035691 ID=TCONS_00035691|Name=TCONS_00035691|organism=Clytia hemisphaerica|type=transcript|length=851bp|location=Sequence derived from alignment at sc0001352:30592..31442 (Clytia hemisphaerica)
GTAAACCTATAAAAAGAGAGTTATCAAAAggaaaaaaggttgaaaaaaag
ttttaccaTTCTTGTGGATAGTTTCTTTGGTGGTGTGTGTgactgtttgt
tttgatttttctagcctagaagtattttctttttcctttttcccgCGGCG
TGTTGTCAGTGTGAAGTATTTTGATTGACGGATCGACGTACGTGCTCGGG
ACGCGTGAGATAAATGTCGTTTTTCTTCCGTGTGTTGTCTGTCCTGTCGT
TTCCTTCTTCTAGAGAAGATGAAATATTTAATCGACAGGCTCAACCTTTT
ATAGGGTcatctggaaaaactactggtAATTTTCCGTGCCATAAGtacac
aaaagaaaatctttagtCCGCCTATAACAAGGAATGTTCCACGGCCAACA
AAAAagatactttaatcggattgcAAACAAACAAGCAGagacaaattatt
tttaatagCTCACTATACTTACATGGTTTGACCTTTGTACTTTAAACCAA
CGGTAAAACGTTTTCCGAATGATTCGTGCGACAAATCTCTAAAGATTTTC
AACAGTTATCAATTATATCATTAAAGAAATTATGACTTTTGTGTGAAATG
CTTCGTGAAACCGCAAGCTTTGACAATTTTTTGACGNTATATTATTAAAG
AAATTATGACTTTTGTGTGAAATGCTTCGTGAAACCGCAAGCTTTGACAA
CTTTTTGACGTGCTTGAACGAATGCACCTTTGGACCCCGTCTGATTTTCA
CTAAACCAAAAGTGAACTGAATTTCAAACCACTCCTTGTTgatgaaatca
gaaaaaagcaaagttcagcttTTTATCTTCTTACATACACCTGCTCTCGG
C
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020921XLOC_020921Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035691-exon-sc0001352-1491911889:30592..31442TCONS_00035691-exon-sc0001352-1491911889:30592..31442Clytia hemisphaericaexon
TCONS_00035691-exon-sc0001352-1510915933:30592..31442TCONS_00035691-exon-sc0001352-1510915933:30592..31442Clytia hemisphaericaexon
TCONS_00035691-exon-sc0001352-1575043694:30592..31442TCONS_00035691-exon-sc0001352-1575043694:30592..31442Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001352supercontigsc0001352:30592..31442 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.59728	3.12553	1.93966	2.20373	9.91155	9.18669	20.6037	26.8714	26.171	49.087	37.1194	11.0043	11.7241	3.96946	3.0124	13.3352	13.5239	9.77965	0.411208	0.430299	8.54876	9.38202	7.28657	6.33653	5.28051	6.4072	3.10674	0.48521	0.184007	0.187474
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035691 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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