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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035687 ID=TCONS_00035687|Name=TCONS_00035687|organism=Clytia hemisphaerica|type=transcript|length=979bp
gttcaggttaaattttagttattttcagcacattttattttaaaacaacT
AAATTTTTTCTAGTCTGTAAAGTAAATTTTCAACATTCGACGCATGTGTT
TCGTTTTTGCGGGAACTTCACCTTTGTTGTAAATGGCGGTCACAAATTGA
GTGATCCTGCGAGATATTTGGAAATTATTCTCTTGAGAAGGAGAAATCGA
aactttttaatcaaaagttttAAGAAGAATTAATCAAGATGTCAAAGAAA
GTACAGAAAGTTATGGTCCAGCCTATTAACCTAATTTTTAGGTATCTGCA
AAATAGGGCAAGAATTCAGATTTGGCTTTACGAACAGAGTAACACACGAA
TTGAAGGTCATATCATTGGTTTTGATGAGTACATGAATCTTGTGTTGGAT
CAAGCTGAAGAAGTTCACATCAAGAACAAATCACGCAAGTCACTTGGTCG
AATTCTTTTGAAAGGGGACAACATCACATTGATTCAGAACGTGGCGCCAT
AATGAAATTGCATCGGACGGAACATCACACACTCTACGGAAAAcctttgt
acatattttttacTGAGATAGAATCTTGTGTTCTATGACACATTTGATGG
TAACTATCCATGTCACGTTTATTTCTCTGTTTGGTCTTATTAAAACGGGA
CgattttaataaaattattaGAGGAGCACTCCATCGTCGCCTTAGAGATA
TTATACAGAAAATATGAACAAGCTTTGACCAAAAGTATTCTCTGTGATCT
TTTTACCGGGATTATGTTTAGCTAATGCCAATAGattccaattttcaaaa
tttgattcaaACTACTTTAAAGGGATAAATTTTAGCGTTGAGTCAATCCa
tgaaatttcaagatttcgcggggacttaatttcgccaAATTATAGCcgat
atttgtaaaaaaatattttgaataaattttggtcaaaaactgcctaaaaa
taatTTGGGTTTTTAGGACTTTGTCTAAG Run BLAST on NCBI transcript from alignment at sc0001352:7621..15510+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035687 ID=TCONS_00035687|Name=TCONS_00035687|organism=Clytia hemisphaerica|type=transcript|length=7890bp|location=Sequence derived from alignment at sc0001352:7621..15510+ (Clytia hemisphaerica)
gttcaggttaaattttagttattttcagcacattttattttaaaacaacT
AAATTTTTTCTAGTCTGTAAAGTAAATTTTCAACATTCGACGCATGTGTT
TCGTTTTTGCGGGAACTTCACCTTTGTTGTAAATGGCGGTCACAAATTGA
GTGATCCTGCGAGATATTTGGAAATTATTCTCTTGAGAAGGAGAAATCGA
aactttttaatcaaaagttttAAGAAGAATTAATCAAGATGTCAAAGAAA
GTACAGAAAGTTATGGTCCAGCCTATTGTATCTTTTCAACTTGATTATCC
TTTTTTTGCATTAAGTTTCCTGATATTTTTTAGTCTACTAAAACACATTA
ATATTAATATGTATATATGATAGCATCATTTatagacaggagaaccgtcc
tgtatttttataatctgatgtatacaggacgggtatgacctgtgaggcag
acttgcgctttctctaagaaagtgtgaccagtaaaagaataacaaaattt
gattggactatgttttcaaccgttattattaggatctgggaaattcaaac
tctcagcccataccatgctatatatttcgccatcagtatatagaataaga
aatcatagcatggatcttcagacattttcggaaaaatcttccttttattg
ggctattccacaaaaaaagtatacaggggtattgacaaacttttttcact
aaccccctggaaattttaaatAACAAATTATCCCNATGGATCTTCTGTCA
TTTTCGGAAAAATCTTCCttttattgggctattccacaaaaaaagtatac
aggggtattgacaaacttttttcactaaccccctggaaattttaaataac
aaattatcccctggaaattatgGGGTAGAACCctctggaaagtgaaattt
tgggaaaaagggGCTGGAAAACAACTATTGATGACAgtttaggcggcaat
cacaaatatcttcatttcgcgtcgcccgaccgactctcgaaaattgagta
gagttgagtcggtgagtcagtaaatttgtcggactttttctgtcagtgtc
ctttccttcgttcaaaaattttattattgccgattttttgcgagcgattt
ctagcgcattcgcagcattttgactttgtttatcattacatgcgccattt
tggggtcggaggtcacagtgttcaaaggtcgtaattttaaaccacccatt
acacgcggttgttttggctgctggctggcagttttttccaagaatgcact
ccaaaaatggatggaaaaatggaaacccaaaaatttttacgaccaaccga
ccgaccgaccgaccgaccgaccgaccgactcactttttagacccaacaag
gacgcgaaatgaagatatttgtgattgccgccttatcagtgcgtctcaaa
ccgcgatatttcgagagcacggaagcgcgtcaaaacaccagcttttttag
agttttgtctcgtttacccaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTTTTGCACGT
Gccgagattggaaattaaatgagagtaaaagacgggggcgtcttagtatg
taatattaattcattattcttttatttttttttttcgcgaatgaaaaatg
aatttttgatttttgaattaaggaaatatagtataatatattgtatttga
ttgtcaatgccaaaaaatacttacgaataatctgctgtgttgcttcgcta
tttacccccggattgttttagtaggcacttcggtcacgtaaataaaaaca
cgtgtatatgttgaagccNTGCTTCgctatttacccccggattgtttaag
taggcacttcggtcacgtaaataaaaacacgtgtatatgttgaagccgac
tgtggactgaccgcaattgcaattacataaattattgtggaagggaacgc
tcgagacgaatgtttgggaaatcaaaaagacaacttttgtgagaatgttg
agttttgtttatatggctgtttgtgacgcactgctTATGAAgagagaacc
ccctggaaaccttcgataacccccttggaaaatctgaaaaaggaacaaaa
accccttggaaaacCAAGGCTCAgacccccctggaaaagttcgtcaatac
ccctgtatggtttaaaaatggaatagcccattccTTTCCTTAAAATCGAA
ggtaagaaaaattttcaaagctcaAATATTAAATATCTTGGTGTTTTGAT
CGACTCACCACATCTCAACTGGAAAGCCCACACCACTTCATTACCGTGAG
TGGTcataaatccgacagccctgccaaaatccgatggggtctttcataga
tacaaactaaaataaaaataaatctttcgctgtgacgcaatgaagatacc
aaagtgtcaactaaactgagagatttgatactcTATACCTGAAATGGAGC
ctaataacaataattgcttcttatacaaaacatatttttaacattttaaa
cacaagcaacagattcagaataatagaggcaattatttttacaactcaca
cttttttgatcacattaatcgacatcttgacattatactcatcttgttag
atgttttgttttgagagttcttgcaatggtttattgttcaacttggagag
gggatgtttgtaaacatagaattttttttcatagcagttatttggggggt
tggatttaggcagggctgtcggttttaggaccactcacggtatcaGCTAA
ACTTGCCAGAGCTAATGGTATCATATCTAAGCTCAGGTACTAGGcgacaa
tcacaaatatcttcgcgtcgcccgaccgactcctgaaaattgagtaaaat
tgagTCGGAGAGTCGGTAAATTcgtcaaactttttgttttgatgacgttt
cctttgctcaaaaattttattattgctgatttttgtgatcgatttctagc
gcattcgcagcattttaacattgtttatcattacacgtGCCATTATGTGT
CAAAGGTCACAGTGTTTAAACTTCATAATCTGAAACCACGCAAAACATAT
ACTCGATTTGGCCTCCCGCCGCCTCAGTTAACGTCAGTTAACGCCCTTTT
ACTGCATCACagaccaattttaagaaaacccgaaaatctttactaccgac
cgaccgaccgaccgactcactttttagatccaacgaggacgcgaaatgaa
gatatttgtgattgccgtcTTATTTGATCGCGTGTGATtacattcgattg
gttcgattttGATTTTNgaccgactcactttttagatctaacgaggacgc
gaaatgaagatatttgtgattgccgccctACATTTCAACAAAAACTTTAG
TTAACATCTACCATGCTCTATTTCATTCTCATCTTCAATACGGTTGTCGA
CTATGGGGTCTTACAGATAAAACCACATCCAAGCCCATTTTTATTCTTCA
AAAGAAAGCCCTTCGTCTCATGACTTTCAACAACTTTCAATTCCCTTCTT
CTCCACTTTTTTTCTGATCTTAAATTTCTCTTTGACCTAGTCAAATGCCT
TAACATTTCTTTTGTTCACAAATTTCTGAATAACATAACCTGCTATTCCC
CTTGACCTTCTAAATTCTTTTAACTTTGTCCAGCTTGATGCTGATGGTGA
AGATAACTAAGGCACCAGAGGAGCAAAATTGAAGCTTCTTTTTGTTCCTT
CCTACAATACCATTACTTTTGGTAATAAATCCTTTTCTAAAATCTGCTTA
ACACAATGGAATAGTATTCAGCGATCTTATCCAAATATTACTCTGACCTC
ATCTGATTTTAGCCTTGTCAAATCTCTTGCCTTTACCCAATGTCTTTGGG
AATACTGAGCACACCCCTCTACACACAGCGTACTTTCTCTTTTTATCTTT
ATCTAAACAAAGTTTATAAAATCAAcatacttaatattttttttgcactt
ttgcATTGTTAGATGAAAAACTGGGAGAAAAGCTTAAGAAGATATTGTAG
TGATGTACaactttaataaaaacaaaaagctgGCAATTTAGCTGCACATG
ATATTAAAACAAGCTATCTTTGAAATGGGATATGGGATTTAAGATTCAAG
CTGATTTGATAAGTCTGGAGGGTAAAACAAATAAAGCTCCTACATTGAAA
AAGGCTTAAATTGATAAGGATAAGACcatccttttttacactttttacat
tttaaatttaaagCACACCACCCCTCATAGTAGTTAGTACCCTAAAAGTA
ATTTGATTAAGTTAGAATTTATACTACAACACCCTTTACAGCAGCAATTA
GTACCCAGGTACTAATtgtaaattccaaaaatcaaatatGACTCACCACG
GTACTAATCGTCATGATGTCTGGTACCAACTGCATGACCTCCCCCCTGGC
CGGACGTGTaaactcaaattttaaaagtatCCTCATCTGACAACAGAATT
TGCGTGTCCGGTGCGTCCGCAGGGTCTTGGTTAttaatttgagggctatg
caagcttccctccactgatgcaagttacttgACTTCACGGTATCAAGATT
ACACGACTTGGAGTGTGGGCCaattactttcgttttcagtggtttcacat
TTGATTTCAAACCAACATCTTACAGTTGNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNGTCTGGTACCAACTGCATGACCTCCCCCCTGGCC
GGACGTGTaaactcaaattttaaaagtatCCTCATCTGACAACAGAATTT
GCGTGTCCGGTGTTTGtaaagtccggtgcgtccgcaGGGTCTTGGTTAtt
aatttgagggctatgcaagcttccctccactgatgcaagttacttgACTT
CACGGTATCAAGATTACACGACTTGGAGTGTGGGCCaattacttttgttt
tcagtggtttcacatTTGATTTCAAACCAACATCTtacagttgggtgttt
aagataaaaatggtaattattgctctttttggccataataatttttttca
ccaATGAAAtgctaagtaagtaagtctgcgaccgcagtcggaggcgacct
gaaggctcctctttcgatagctatctacccgaaggtaggggagggcgcca
ctctttctccctggatttctccactcacccttgatccttctcttagttgc
tgagcatcaagcagagaggcatcaagtaccattttgggaatctttggtat
gacccggctgggggttgaacccacaaccttgcgaaccgtagccggatgct
ctaccactgtactacggtcgctcgaaatgctgaatcagcagaaaaacaaa
aaaagtaaataaatcagTAAATGAAAATTACCGTTTTCGCCAATTACTgc
cgtttttggaaagaaaagtagattttattattgaacacgtggtatttgat
accctcgcgataagtaggcccactgtgtctcgtttagttttgttttcaac
tggtttttgttggaaatgcagataaaAAAATCGAGTCATctcatatgtaa
acaaacttacaacgggggttttgttatctctttctggctgtgtttcggca
tcgatgctggatctttttacatattattttagaacttttcatgttattga
gcaacgaaaaatcgaaaaaatcacttttaaaaatccgaaaaacctttttc
tcaatgcaattttacaattttcaaacacaacacctctgacatctttgccc
ttataaGGACAACACGTTTTGCTGATttagcatttcatcgttaaaaaaat
tgttttcggcaattattgccaaaaagagcaataattgccatttttatctt
aaacatcCAACTGTCTTATTGCGTTAGCAACTGAAAACCCTTCGTATCAG
TTATGGTGACAAAacgaaaatataaataaaaccatttatttgatttgaga
acAAATCTTCTATACATATCTTGATACATCCCTTACTCTATTCTTTTTCT
AATTGCCTCTTTGTAACTTTTAaaagtgtttctaagatcacttttattga
atcgctttctttgtaactttaaAGAGTGTTTCTATTTCCTGTAGTTCATC
AATCTAAATTTCTTACTTTTCCTTAACTTGATATACATTTGATAAACAGA
ACCTAATTTTTAGGTATCTGCAAAATGTAAGTATATTATTGACTTGTAAT
TTGATTCATACCCGAAgtgagcaaaaaataaaaatttcctttgttcttat
aaatagctattgtattctaaaaaaggctttagaaaaacgTTCCCTGAGTC
TTCTataatgcttattttatcctaaatattcaataaattacgtttaaacg
atatatttgacataaaacaTAAACTTGTATTAGAAATGTGTTAATTTTTG
TGACATCTTACTGTCAgaaaaatgtcatcatgctcaaggtgtgaaaattt
ttagttttcaattttttttattttgaagctaaataaaagaatttacagaa
aatgtcATGCCAAAAGCATTATTTAAGGAGCTATTAACATTGGTTTCTTC
CCCTCCAagcagaaacagcccccccccctagtacgaatagagTTAACTTT
TGTTTTATGATTCAACAACTtatgatttaaaatattttttctttcattca
gAGGGCAAGAATTCAGATTTGGCTTTACGAACAGAGTAACACACGAATTG
AAGGTCATATCATTGGTTTTGATGAGTACATGAATCTTGTGTTGGATCAA
GCTGAAGAAGTTCACATCAAGAACAAATCACGCAAGTCACTTGGTAAGGA
TTATAAAGTTCTCTGTTCTGCTGACATTAGGGTCTATGTTTGCCTTCGCT
TGTAACTTAGCACTCTTTATAGTAATTTAATGACTCGAATTTCGCTGGAT
TAACTTTTGCAAAATTAGTTTGTTAGTCTGTTCGTTCGTTtgcttattag
ttttttttcagattttttgcattgtgatgcaaaatgacaagtACCTTGTT
TATGTTATAATGGGTAAAGATTTAATAAGAAAATTACGTCTCGTGGGAAA
CAGCTTTTTCGTTTCTGCTTGCGAAAACCTCCGACATTAAATTGCATGAT
ATTGTTTCTAACCCTGTCTAACTGTAAGTGACACGTTTTTCGCGTCTTTA
TTTTCAGGTCGAATTCTTTTGAAAGGGGACAACATCACATTGATTCAGAA
CGTGGCGCCATAATGAAATTGCATCGGACGGAACATCACACACTCTACGG
AAAAcctttgtacatattttttacTGAGATAGAATCTTGTGTTCTATGAC
ACATTTGATGGTAACTATCCATGTCACGTTTATTTCTCTGTTTGGTCTTA
TTAAAACGGGACgattttaataaaattattaGAGGAGCACTCCATCGTCG
CCTTAGAGATATTATACAGAAAATATGAACAAGCTTTGACCAAAAGTATT
CTCTGTGATCTTTTTACCGGGATTATGTTTAGCTAATGCCAATAGattcc
aattttcaaaatttgattcaaACTACTTTAAAGGGATAAATTTTAGCGTT
GAGTCAATCCatgaaatttcaagatttcgcggggacttaatttcgccaAA
TTATAGCcgatatttgtaaaaaaatattttgaataaattttggtcaaaaa
ctgcctaaaaataatTTGGGTTTTTAGGACTTTGTCTAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035687-exon-sc0001352-1491911889:7621..7897 | TCONS_00035687-exon-sc0001352-1491911889:7621..7897 | Clytia hemisphaerica | exon |
| TCONS_00035687-exon-sc0001352-1510915933:7621..7897 | TCONS_00035687-exon-sc0001352-1510915933:7621..7897 | Clytia hemisphaerica | exon |
| TCONS_00035687-exon-sc0001352-1575043694:7621..7897 | TCONS_00035687-exon-sc0001352-1575043694:7621..7897 | Clytia hemisphaerica | exon |
| TCONS_00035687-exon-sc0001352-1491911889:13970..13996 | TCONS_00035687-exon-sc0001352-1491911889:13970..13996 | Clytia hemisphaerica | exon |
| TCONS_00035687-exon-sc0001352-1510915933:13970..13996 | TCONS_00035687-exon-sc0001352-1510915933:13970..13996 | Clytia hemisphaerica | exon |
| TCONS_00035687-exon-sc0001352-1575043694:13970..13996 | TCONS_00035687-exon-sc0001352-1575043694:13970..13996 | Clytia hemisphaerica | exon |
| TCONS_00035687-exon-sc0001352-1491911889:14472..14613 | TCONS_00035687-exon-sc0001352-1491911889:14472..14613 | Clytia hemisphaerica | exon |
| TCONS_00035687-exon-sc0001352-1510915933:14472..14613 | TCONS_00035687-exon-sc0001352-1510915933:14472..14613 | Clytia hemisphaerica | exon |
| TCONS_00035687-exon-sc0001352-1575043694:14472..14613 | TCONS_00035687-exon-sc0001352-1575043694:14472..14613 | Clytia hemisphaerica | exon |
| TCONS_00035687-exon-sc0001352-1491911889:14978..15510 | TCONS_00035687-exon-sc0001352-1491911889:14978..15510 | Clytia hemisphaerica | exon |
| TCONS_00035687-exon-sc0001352-1510915933:14978..15510 | TCONS_00035687-exon-sc0001352-1510915933:14978..15510 | Clytia hemisphaerica | exon |
| TCONS_00035687-exon-sc0001352-1575043694:14978..15510 | TCONS_00035687-exon-sc0001352-1575043694:14978..15510 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001352 | supercontig | sc0001352:7621..15510 + |
Blast
BLAST of TCONS_00035687 vs. Swiss-Prot (Human)
Match: RUXE (Small nuclear ribonucleoprotein E OS=Homo sapiens GN=SNRPE PE=1 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 3.271e-37 Identity = 61/75 (81.33%), Postives = 68/75 (90.67%), Query Frame = 2
Query: 272 PINLIFRYLQNRARIQIWLYEQSNTRIEGHIIGFDEYMNLVLDQAEEVHIKNKSRKSLGRILLKGDNITLIQNVA 496
PINLIFRYLQNR+RIQ+WLYEQ N RIEG IIGFDEYMNLVLD AEE+H K KSRK LGRI+LKGDNITL+Q+V+
Sbjct: 17 PINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSVS 91
The following BLAST results are available for this feature:
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