TCONS_00035685 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035685
Unique NameTCONS_00035685
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length679

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035685 ID=TCONS_00035685|Name=TCONS_00035685|organism=Clytia hemisphaerica|type=transcript|length=679bp
ATTTTCTCCTTCAAAAATGTCAGCTAATCTGCTTTGGTAATGAGAGTGAT
ACGAAGAATCTAGAGAAAAGTGATATGGCAAATAAAAGTTCCTGACATAA
CTGGCACGCATGATTTGTGACCACTTTCCTCTCATGTTATCTGCATTTGA
ACGATTTGTTTCACTTTTGAGTTGTTGTTTTATCAAGGAGTGGAAGGATT
CTTTCCCTTGCATTGATAAGATTCCGTATCCAATATTATATTTTTCGTAA
AGCTTTTCAGCATGGTATGGAACAGCATAGCCAAGAGTCCAAACAGTGCT
TTGACATTTTTCAGGAAAGAAAAGCGAGAATAGATTAAAATATACTCGAC
ATACTTGCTTTAGACTGTTTGGATAGTCCTTTGTAACAATAACTTTGTTC
AACATACCACCAATATCACGGAGATGGGTACAAATAAGGGATAGTGCCTG
ATGTTTAATCTTGACTGCTTCACTCTCATCTACATAAATGGCATCCATAA
CACGATGACAATGCCTGGCTAGGGCTATAGCCTGTGCACCAATGAGGCGC
ACCTCTAATACATTCATCCGTGTTGCCTCCTTTGCATAATGCTCTCTAAT
CTTTTTGACGACAAACTTTAAACCACAGCCAGGATTCTCTTGACATCTTA
CTGGACTTTCCAATACCttacaaaaaatc
Run BLAST on NCBI

protein sequence of TCONS_00035685-protein

>TCONS_00035685-protein ID=TCONS_00035685-protein|Name=TCONS_00035685-protein|organism=Clytia hemisphaerica|type=polypeptide|length=226bp
IFCKVLESPVRCQENPGCGLKFVVKKIREHYAKEATRMNVLEVRLIGAQA
IALARHCHRVMDAIYVDESEAVKIKHQALSLICTHLRDIGGMLNKVIVTK
DYPNSLKQVCRVYFNLFSLFFPEKCQSTVWTLGYAVPYHAEKLYEKYNIG
YGILSMQGKESFHSLIKQQLKSETNRSNADNMRGKWSQIMRASYVRNFYL
PYHFSLDSSYHSHYQSRLADIFEGEN
Run BLAST on NCBI

transcript from alignment at sc0001349:47275..47953

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035685 ID=TCONS_00035685|Name=TCONS_00035685|organism=Clytia hemisphaerica|type=transcript|length=679bp|location=Sequence derived from alignment at sc0001349:47275..47953 (Clytia hemisphaerica)
gattttttgtaaGGTATTGGAAAGTCCAGTAAGATGTCAAGAGAATCCTG
GCTGTGGTTTAAAGTTTGTCGTCAAAAAGATTAGAGAGCATTATGCAAAG
GAGGCAACACGGATGAATGTATTAGAGGTGCGCCTCATTGGTGCACAGGC
TATAGCCCTAGCCAGGCATTGTCATCGTGTTATGGATGCCATTTATGTAG
ATGAGAGTGAAGCAGTCAAGATTAAACATCAGGCACTATCCCTTATTTGT
ACCCATCTCCGTGATATTGGTGGTATGTTGAACAAAGTTATTGTTACAAA
GGACTATCCAAACAGTCTAAAGCAAGTATGTCGAGTATATTTTAATCTAT
TCTCGCTTTTCTTTCCTGAAAAATGTCAAAGCACTGTTTGGACTCTTGGC
TATGCTGTTCCATACCATGCTGAAAAGCTTTACGAAAAATATAATATTGG
ATACGGAATCTTATCAATGCAAGGGAAAGAATCCTTCCACTCCTTGATAA
AACAACAACTCAAAAGTGAAACAAATCGTTCAAATGCAGATAACATGAGA
GGAAAGTGGTCACAAATCATGCGTGCCAGTTATGTCAGGAACTTTTATTT
GCCATATCACTTTTCTCTAGATTCTTCGTATCACTCTCATTACCAAAGCA
GATTAGCTGACATTTTTGAAGGAGAAAAT

Coding sequence (CDS) from alignment at sc0001349:47275..47953

>TCONS_00035685 ID=TCONS_00035685|Name=TCONS_00035685|organism=Clytia hemisphaerica|type=CDS|length=678bp|location=Sequence derived from alignment at sc0001349:47275..47953 (Clytia hemisphaerica)
attttttgtaaGGTATTGGAAAGTCCAGTAAGATGTCAAGAGAATCCTGG
CTGTGGTTTAAAGTTTGTCGTCAAAAAGATTAGAGAGCATTATGCAAAGG
AGGCAACACGGATGAATGTATTAGAGGTGCGCCTCATTGGTGCACAGGCT
ATAGCCCTAGCCAGGCATTGTCATCGTGTTATGGATGCCATTTATGTAGA
TGAGAGTGAAGCAGTCAAGATTAAACATCAGGCACTATCCCTTATTTGTA
CCCATCTCCGTGATATTGGTGGTATGTTGAACAAAGTTATTGTTACAAAG
GACTATCCAAACAGTCTAAAGCAAGTATGTCGAGTATATTTTAATCTATT
CTCGCTTTTCTTTCCTGAAAAATGTCAAAGCACTGTTTGGACTCTTGGCT
ATGCTGTTCCATACCATGCTGAAAAGCTTTACGAAAAATATAATATTGGA
TACGGAATCTTATCAATGCAAGGGAAAGAATCCTTCCACTCCTTGATAAA
ACAACAACTCAAAAGTGAAACAAATCGTTCAAATGCAGATAACATGAGAG
GAAAGTGGTCACAAATCATGCGTGCCAGTTATGTCAGGAACTTTTATTTG
CCATATCACTTTTCTCTAGATTCTTCGTATCACTCTCATTACCAAAGCAG
ATTAGCTGACATTTTTGAAGGAGAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020915XLOC_020915Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035685-exon-sc0001349-1491911889:47275..47953TCONS_00035685-exon-sc0001349-1491911889:47275..47953Clytia hemisphaericaexon
TCONS_00035685-exon-sc0001349-1510915933:47275..47953TCONS_00035685-exon-sc0001349-1510915933:47275..47953Clytia hemisphaericaexon
TCONS_00035685-exon-sc0001349-1575043694:47275..47953TCONS_00035685-exon-sc0001349-1575043694:47275..47953Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035685-proteinTCONS_00035685-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001349supercontigsc0001349:47275..47953 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.226454	0.220828	0.0854675	0	0.20359	0.563079	0.485237	0.454273	0.190828	0.472743	0.229428	0.301634	0.853441	0.417086	0.428626	0.183993	0.623326	0.290404	0	0.251902	0.0729828	0.106795	0.259647	0	0.0810444	0.14466	0.207009	0.110463	0.083782	0.0853606
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035685 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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