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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035681 ID=TCONS_00035681|Name=TCONS_00035681|organism=Clytia hemisphaerica|type=transcript|length=1908bp
CTATTTCTCTTTAACTGACTTTAGTCATGTTTAGACTCAGACAACAGGTC
CTAATTTCAGACCTGAATTTAGTTGCTATTACTTACGGTATGAGCTTTgt
gttctttatttttagagAAGTTGTTAGAATAAAACAAATCTCATGCTTAT
TATTTTCCAATGGCAATTTGAATAGTAGCTGATTGACTACTAATGTCTTA
TATAACCAGCCCCACCGCCAGACAGCCCATGCAGTAATGTCAACCGAGTA
AACCTAAAAGCGTATTTATCAAATCACATCATGGCAGCTGCGTTTTTGCC
GCTGTGAAAGATGCAACACTGGCGAACTGAAGAATGAATTTATCCGATGA
GATTTAACGTAACATCGACCAATTTATATGGAACAAACTTCATTTTCGTG
GAATTGAGTTATAAAAAACTCTGAGAGATTACTGTGTTTTTTTAGCCCTT
GTATTTCTGGTTGCTAAAATTAACATTGCTTAGTTGGGTGTTAAGGTACa
tgttcaaaattttagaatgaCATTTTTGTCCTGCAAACAGTTGTACATGG
ATCGTAGTATTTATACATTTGGCAGCCAAAGACACTGAAAGGATTTTTGC
AATAACATGGCCAttgtttatatattatattgtggacatcaaatgataag
atttatatacgagaaaaggaaaattttatgatgatgatggacACGTCAAT
GTTTACTTTGCAGAATCAAATTtatgaaaacataaaacaaaaacatgaaa
actataatgaaaacatgaaaactaTAATGCTGCTATTCATGAAAATGTTT
AATTAACACAGGAAGAATCACCGTGACATTTTAGTGAATTCATGatggtg
aaaagctgcaatcatTCAATAATTCACTCAAAAAAGCTGTGAATTGTAGA
AAGGTTGCAACTTTTCACCTAGTTTCAAtgtgaattcactaaaaagtcac
aaggaatttttctgaattttttcctgtgtaccgtcaacagctctaacttg
ggacaagtGGTCATAAAATGGGATGGTTgactttctggtctgtattttca
cttactgttaaatctctctTGATAACaaagtttgttttctatgaGATTTG
CGactattttaaaattaaatgactttggaggttctgtAAAATGATGGctg
aattgctgtcccatgttttatcaagttagagccgttgacgaTAAGTATAT
CTTCAGATCTTGCATGCTAATTTACAtcaattataataaaaatactaatt
tttgcccaaaagtataattattttccaaaaataacgCATTCAAGATTTTG
GGTCAGGAGGGGCGCCCCTCTTGTCTATGCTACTGGAGGGATTCTGCAAG
AATCTTgtatcaaagtcaaaaattttgcatgatGGAAATATAATTTCGTG
AAATAGTAAGATTTTCTGCTGGAATTGATTTTGTCAAGATtagatttttt
ctattcaagaatactgaacaaaaaaaaaataatactactgtaatattgaa
attacattaaaggaagaatttttggcgagaatttaatttggcatatGATG
GGTTTCAAGGATCAAAATTAAGGTGAAAATGTTTGAGATACCCCCTTTTA
TGACGtcgatttgagaaaatttaaatttggcgggaacttttcggccaaaa
tttcttcctttaatgtatgcGTAACAGTGCatggaaattttaaattgaCT
TTTCACAGGATCTCTttacaaaattatgaaattatccaaaattttgattg
aGTGTAAAAGAGGTGTTAAAGGAATTTTTATACAACATAataatattgat
tgttgtttgtaaTTGTATTTTAATCCATTTTAATAATCCTTGTACagggt
aatttttcaaaattgtagtTCATTAAGGCTAACGGTTAACAAGAATTATC
TTactaga Run BLAST on NCBI transcript from alignment at sc0001349:12204..14238+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035681 ID=TCONS_00035681|Name=TCONS_00035681|organism=Clytia hemisphaerica|type=transcript|length=2035bp|location=Sequence derived from alignment at sc0001349:12204..14238+ (Clytia hemisphaerica)
CTATTTCTCTTTAACTGACTTTAGTCATGTTTAGACTCAGACAACAGGTC
CTAATTTCAGACCTGAATTTAGTTGCTATTACTTACGGTATGAGCTTTgt
gttctttatttttagagAAGTTGTTAGAATAAAACAAATCTCATGCTTAT
TATTTTCCAATGGCAATTTGAATAGTAGCTGATTGACTACTAATGTCTTA
TATAACCAGCCCCACCGCCAGACAGCCCATGCAGTAATGTCAACCGAGTA
AACCTAAAAGCGTATTTATCAAATCACATCATGGTAGCTGCTTTTTTGCC
GCTGTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTATTTATCAAA
TCACATCATGGCAGCTGCGTTTTTGCCGCTGTGAAAGATGCAACACTGGC
GAACTGAAGAATGAATTTATCCGATGAGATTTAACGTAACATCGACCAAT
TTATATGGAACAAACTTCATTTTCGTGGAATTGAGTTATAAAAAACTCTG
AGAGATTACTGTGTTTTTTTAGCCCTTGTATTTCTGGTTGCTAAAATTAA
CATTGCTTAGTTGGGTGTTAAGGTACatgttcaaaattttagaatgaCAT
TTTTGTCCTGCAAACAGTTGTACATGGATCGTAGTATTTATACATTTGGC
AGCCAAAGACACTGAAAGGATTTTTGCAATAACATGGCCAttgtttatat
attatattgtggacatcaaatgataagatttatatacgagaaaaggaaaa
ttttatgatgatgatggacACGTCAATGTTTACTTTGCAGAATCAAATTt
atgaaaacataaaacaaaaacatgaaaactataatgaaaacatgaaaact
aTAATGCTGCTATTCATGAAAATGTTTAATTAACACAGGAAGAATCACCG
TGACATTTTAGTGAATTCATGatggtgaaaagctgcaatcatTCAATAAT
TCACTCAAAAAAGCTGTGAATTGTAGAAAGGTTGCAACTTTTCACCTAGT
TTCAAtgtgaattcactaaaaagtcacaaggaatttttctgaattttttc
ctgtgtaccgtcaacagctctaacttgggacaagtGGTCATAAAATGGGA
TGGTTgactttctggtctgtattttcacttactgttaaatctctctTGAT
AACaaagtttgttttctatgaGATTTGCGactattttaaaattaaatgac
tttggaggttctgtAAAATGATGGctgaattgctgtcccatgttttatca
agttagagccgttgacgaTAAGTATATCTTCAGATCTTGCATGCTAATTT
ACAtcaattataataaaaatactaatttttgcccaaaagtataattattt
tccaaaaataacgCATTCAAGATTTTGGGTCAGGAGGGGCGCCCCTCTTG
TCTATGCTACTGGAGGGATTCTGCAAGAATCTTgtatcaaagtcaaaaat
tttgcatgatGGAAATATAATTTCGTGAAATAGTAAGATTTTCTGCTGGA
ATTGATTTTGTCAAGATtagattttttctattcaagaatactgaacaaaa
aaaaaataatactactgtaatattgaaattacattaaaggaagaattttt
ggcgagaatttaatttggcatatGATGGGTTTCAAGGATCAAAATTAAGG
TGAAAATGTTTGAGATACCCCCTTTTATGACGtcgatttgagaaaattta
aatttggcgggaacttttcggccaaaatttcttcctttaatgtatgcGTA
ACAGTGCatggaaattttaaattgaCTTTTCACAGGATCTCTttacaaaa
ttatgaaattatccaaaattttgattgaGTGTAAAAGAGGTGTTAAAGGA
ATTTTTATACAACATAataatattgattgttgtttgtaaTTGTATTTTAA
TCCATTTTAATAATCCTTGTACagggtaatttttcaaaattgtagtTCAT
TAAGGCTAACGGTTAACAAGAATTATCTTactaga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035681-exon-sc0001349-1491911889:12204..12480 | TCONS_00035681-exon-sc0001349-1491911889:12204..12480 | Clytia hemisphaerica | exon |
| TCONS_00035681-exon-sc0001349-1510915933:12204..12480 | TCONS_00035681-exon-sc0001349-1510915933:12204..12480 | Clytia hemisphaerica | exon |
| TCONS_00035681-exon-sc0001349-1575043694:12204..12480 | TCONS_00035681-exon-sc0001349-1575043694:12204..12480 | Clytia hemisphaerica | exon |
| TCONS_00035681-exon-sc0001349-1491911889:12608..14238 | TCONS_00035681-exon-sc0001349-1491911889:12608..14238 | Clytia hemisphaerica | exon |
| TCONS_00035681-exon-sc0001349-1510915933:12608..14238 | TCONS_00035681-exon-sc0001349-1510915933:12608..14238 | Clytia hemisphaerica | exon |
| TCONS_00035681-exon-sc0001349-1575043694:12608..14238 | TCONS_00035681-exon-sc0001349-1575043694:12608..14238 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001349 | supercontig | sc0001349:12204..14238 + |
Blast
The following BLAST results are available for this feature:
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