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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035680 ID=TCONS_00035680|Name=TCONS_00035680|organism=Clytia hemisphaerica|type=transcript|length=1903bp
CTATTTCTCTTTAACTGACTTTAGTCATGTTTAGACTCAGACAACAGGTC
CTAATTTCAGACCTGAATTTAGTTGCTATTACTTACGGTATGAGCTTTgt
gttctttatttttagagAAGTTGTTAGAATAAAACAAATCTCATGCTTAT
TATTTTCCAATGGCAATTTGAATAGTAGCTGATTGACTACTAATGTCTTA
TATAACCAGCCCCACCGCCAGACAGCCCATGCAGTAATGTCAACCGAGTA
AACCTAAAAGCGTATTTATCAAATCATGGCAGCTGCGTTTTTGCCGCTGT
GAAAGATGCAACACTGGCGAACTGAAGAATGAATTTATCCGATGAGATTT
AACGTAACATCGACCAATTTATATGGAACAAACTTCATTTTCGTGGAATT
GAGTTATAAAAAACTCTGAGAGATTACTGTGTTTTTTTAGCCCTTGTATT
TCTGGTTGCTAAAATTAACATTGCTTAGTTGGGTGTTAAGGTACatgttc
aaaattttagaatgaCATTTTTGTCCTGCAAACAGTTGTACATGGATCGT
AGTATTTATACATTTGGCAGCCAAAGACACTGAAAGGATTTTTGCAATAA
CATGGCCAttgtttatatattatattgtggacatcaaatgataagattta
tatacgagaaaaggaaaattttatgatgatgatggacACGTCAATGTTTA
CTTTGCAGAATCAAATTtatgaaaacataaaacaaaaacatgaaaactat
aatgaaaacatgaaaactaTAATGCTGCTATTCATGAAAATGTTTAATTA
ACACAGGAAGAATCACCGTGACATTTTAGTGAATTCATGatggtgaaaag
ctgcaatcatTCAATAATTCACTCAAAAAAGCTGTGAATTGTAGAAAGGT
TGCAACTTTTCACCTAGTTTCAAtgtgaattcactaaaaagtcacaagga
atttttctgaattttttcctgtgtaccgtcaacagctctaacttgggaca
agtGGTCATAAAATGGGATGGTTgactttctggtctgtattttcacttac
tgttaaatctctctTGATAACaaagtttgttttctatgaGATTTGCGact
attttaaaattaaatgactttggaggttctgtAAAATGATGGctgaattg
ctgtcccatgttttatcaagttagagccgttgacgaTAAGTATATCTTCA
GATCTTGCATGCTAATTTACAtcaattataataaaaatactaatttttgc
ccaaaagtataattattttccaaaaataacgCATTCAAGATTTTGGGTCA
GGAGGGGCGCCCCTCTTGTCTATGCTACTGGAGGGATTCTGCAAGAATCT
TgtatcaaagtcaaaaattttgcatgatGGAAATATAATTTCGTGAAATA
GTAAGATTTTCTGCTGGAATTGATTTTGTCAAGATtagattttttctatt
caagaatactgaacaaaaaaaaaataatactactgtaatattgaaattac
attaaaggaagaatttttggcgagaatttaatttggcatatGATGGGTTT
CAAGGATCAAAATTAAGGTGAAAATGTTTGAGATACCCCCTTTTATGACG
tcgatttgagaaaatttaaatttggcgggaacttttcggccaaaatttct
tcctttaatgtatgcGTAACAGTGCatggaaattttaaattgaCTTTTCA
CAGGATCTCTttacaaaattatgaaattatccaaaattttgattgaGTGT
AAAAGAGGTGTTAAAGGAATTTTTATACAACATAataatattgattgttg
tttgtaaTTGTATTTTAATCCATTTTAATAATCCTTGTACagggtaattt
ttcaaaattgtagtTCATTAAGGCTAACGGTTAACAAGAATTATCTTact
aga Run BLAST on NCBI transcript from alignment at sc0001349:12204..14238+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035680 ID=TCONS_00035680|Name=TCONS_00035680|organism=Clytia hemisphaerica|type=transcript|length=2035bp|location=Sequence derived from alignment at sc0001349:12204..14238+ (Clytia hemisphaerica)
CTATTTCTCTTTAACTGACTTTAGTCATGTTTAGACTCAGACAACAGGTC
CTAATTTCAGACCTGAATTTAGTTGCTATTACTTACGGTATGAGCTTTgt
gttctttatttttagagAAGTTGTTAGAATAAAACAAATCTCATGCTTAT
TATTTTCCAATGGCAATTTGAATAGTAGCTGATTGACTACTAATGTCTTA
TATAACCAGCCCCACCGCCAGACAGCCCATGCAGTAATGTCAACCGAGTA
AACCTAAAAGCGTATTTATCAAATCACATCATGGTAGCTGCTTTTTTGCC
GCTGTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTATTTATCAAA
TCACATCATGGCAGCTGCGTTTTTGCCGCTGTGAAAGATGCAACACTGGC
GAACTGAAGAATGAATTTATCCGATGAGATTTAACGTAACATCGACCAAT
TTATATGGAACAAACTTCATTTTCGTGGAATTGAGTTATAAAAAACTCTG
AGAGATTACTGTGTTTTTTTAGCCCTTGTATTTCTGGTTGCTAAAATTAA
CATTGCTTAGTTGGGTGTTAAGGTACatgttcaaaattttagaatgaCAT
TTTTGTCCTGCAAACAGTTGTACATGGATCGTAGTATTTATACATTTGGC
AGCCAAAGACACTGAAAGGATTTTTGCAATAACATGGCCAttgtttatat
attatattgtggacatcaaatgataagatttatatacgagaaaaggaaaa
ttttatgatgatgatggacACGTCAATGTTTACTTTGCAGAATCAAATTt
atgaaaacataaaacaaaaacatgaaaactataatgaaaacatgaaaact
aTAATGCTGCTATTCATGAAAATGTTTAATTAACACAGGAAGAATCACCG
TGACATTTTAGTGAATTCATGatggtgaaaagctgcaatcatTCAATAAT
TCACTCAAAAAAGCTGTGAATTGTAGAAAGGTTGCAACTTTTCACCTAGT
TTCAAtgtgaattcactaaaaagtcacaaggaatttttctgaattttttc
ctgtgtaccgtcaacagctctaacttgggacaagtGGTCATAAAATGGGA
TGGTTgactttctggtctgtattttcacttactgttaaatctctctTGAT
AACaaagtttgttttctatgaGATTTGCGactattttaaaattaaatgac
tttggaggttctgtAAAATGATGGctgaattgctgtcccatgttttatca
agttagagccgttgacgaTAAGTATATCTTCAGATCTTGCATGCTAATTT
ACAtcaattataataaaaatactaatttttgcccaaaagtataattattt
tccaaaaataacgCATTCAAGATTTTGGGTCAGGAGGGGCGCCCCTCTTG
TCTATGCTACTGGAGGGATTCTGCAAGAATCTTgtatcaaagtcaaaaat
tttgcatgatGGAAATATAATTTCGTGAAATAGTAAGATTTTCTGCTGGA
ATTGATTTTGTCAAGATtagattttttctattcaagaatactgaacaaaa
aaaaaataatactactgtaatattgaaattacattaaaggaagaattttt
ggcgagaatttaatttggcatatGATGGGTTTCAAGGATCAAAATTAAGG
TGAAAATGTTTGAGATACCCCCTTTTATGACGtcgatttgagaaaattta
aatttggcgggaacttttcggccaaaatttcttcctttaatgtatgcGTA
ACAGTGCatggaaattttaaattgaCTTTTCACAGGATCTCTttacaaaa
ttatgaaattatccaaaattttgattgaGTGTAAAAGAGGTGTTAAAGGA
ATTTTTATACAACATAataatattgattgttgtttgtaaTTGTATTTTAA
TCCATTTTAATAATCCTTGTACagggtaatttttcaaaattgtagtTCAT
TAAGGCTAACGGTTAACAAGAATTATCTTactaga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035680-exon-sc0001349-1491911889:12204..12475 | TCONS_00035680-exon-sc0001349-1491911889:12204..12475 | Clytia hemisphaerica | exon |
| TCONS_00035680-exon-sc0001349-1510915933:12204..12475 | TCONS_00035680-exon-sc0001349-1510915933:12204..12475 | Clytia hemisphaerica | exon |
| TCONS_00035680-exon-sc0001349-1575043694:12204..12475 | TCONS_00035680-exon-sc0001349-1575043694:12204..12475 | Clytia hemisphaerica | exon |
| TCONS_00035680-exon-sc0001349-1491911889:12608..14238 | TCONS_00035680-exon-sc0001349-1491911889:12608..14238 | Clytia hemisphaerica | exon |
| TCONS_00035680-exon-sc0001349-1510915933:12608..14238 | TCONS_00035680-exon-sc0001349-1510915933:12608..14238 | Clytia hemisphaerica | exon |
| TCONS_00035680-exon-sc0001349-1575043694:12608..14238 | TCONS_00035680-exon-sc0001349-1575043694:12608..14238 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001349 | supercontig | sc0001349:12204..14238 + |
Blast
The following BLAST results are available for this feature:
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