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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035673 ID=TCONS_00035673|Name=TCONS_00035673|organism=Clytia hemisphaerica|type=transcript|length=2531bp
atctagcctggatatccaagctcaaaattttagaaaaaataagttttacc
tcagccagacaaagttctaaaattatagagcttggttcacctagaaatca
ggtgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTTGAGTA
GCCACTTTTCCAAATCATCGCATCTTTTGTCAAACAACTCGGGCTTCGAA
CAGATACGGTTTAGCCTTAATGTTTGACTATATGGTATAGACGTCTTACA
ATGATCCGGATGGCAAGATGTTGCATCAAGATATTGGTGCGTGTCAGTTG
GTTTTACATAGAGGTCGGTCTCTAACTTATCCCCTTTACGACTGACCTTA
ACATCCAAGAAATTGATTTCTGAGTCGGAAAAGTCTGCCGTAAATTTGAT
AGAAGGATGCTCGGCATTCAGATATGTCAGAAATTCGTTTAAAGACTCTT
CCCCGTGTTCCCAAAGCAAAAAGACATCGTCGATGTATCTCCACCAGACT
AAAGGCTTAAGAGGGAAATTGTCCAATAAACGTTTTTCCAACATGTCCAT
AAATAGAATAGCATACGAAGGGGCCATTTTTGTCCCAATCGCTGTTCCTC
GCTTCTGTTTGTAAATTTTACCATTGTGCtcgaaaacattatttttgagC
ACACAATCAGCCAAATCGAGAAGACTTTCAGTCgaaatatttttgtcttc
tCGTTCATCCAGAGCGAGTTTTAATGCCTGCAGTCCTTCATCATGAGGAA
TGTTAGGATATAGGCCAACTACGTCTACTGTGCATAATAAAACATCTTGT
GGCAatgaagaaagagaagaaagttTCCTCAAAAAGTCATTAGTGTCTTT
TATAAATGACTTAACCTTTTGAGCCAGTGGTTGAagatgaaaatctaaaa
aagccGAAATGTTCTCCGTGTAAAACGAAGAATTAGAAATCACTGGTCGA
CCTGGAACGTTATAGAGCCGCTTGTGAATTTTAGGTAATAAATAAAAGCG
ACCTAACTTGGGATTGTTGACAAGAAAATAGTCCAGTGTCTCATGAGAAA
TGTCACCTCTATCATTGATCTTGTTTAGACAGGATTTTATTGTCTGAACA
AGAGGACCGACAGCATCATCCTCGAGTCTCTCATAGACGTTTTCGTCACT
AAGCTGAGACTCGGCCTCTTTAAGATAATCTTCCCTATCCCAGATCACTA
TCCCCGAACCTTTGTCAGCCCCTTTTATAATAATAGAATTGTCATTTCTC
AAGCTAGCAATCGCTTTTCTCTCCTCCCTTGTCACATtatgatgttttat
ttttgtattgatGTTGAGAATTTCCTCTTCTAATCTACTTAAATAAATTT
CAATGGCAGCATCTTTGCCCTTGGGATTGAAGTTGCTCTTTTTCTTAAAA
GGATTATGAATATAGGGTCCTTCATCCCGAAAATGCCAAGCTAGACGCAG
CCTCCTCCCAAAACGCTCCAAATCGGTCTTAATGGCTGCTCTATCAGAAA
AGGATGGGGTAGGTACAAACTTCAATCCCTTGGACAATAAAGAAATCTCA
GCATCATTCAGTTCTCTCTTAGAAAGATTTAAAATATTGTCAGATATAAA
AACACCTTCAAGGCGTGTCCCCTTTCCCTCCCCTAATTCTAATTCTACTG
CAGTTTTTTGATTCAGATTAGTTTTGTTCAAGCGTGAATCAGAAATAACA
GTAGAATCCCTCCCTTGAGAATCCTCATTACTAGACGTATCCCCTTTGTC
CCCAGATGACGCAATCCCTTGAGAACTCTCCGTAGAATCCCTCCCTTGAG
AACCCCCTAAAACCGTCTCATCAAGAgacaataaattaaataaattttca
aaatcaggaTAAATACCTTTAATGTGTTcatttaccttaagtggataaat
tttcccgtggattaattttcgcgattttcgcgtattttggccattttcgc
gaaattttgtccacgcgaaaaatttaaaattatgatttttgccaaaaccc
ctaggaaaatgaaagaaattaggtgaaaaagaggctgattcgcgaaattt
agtccacGCGAAAATTTTCGATTTTCGATTCGCGAAAAAAAatccacgcg
aaaatttatccacttaaggtaagtcctttttaaaagaaaattcattcaaa
TGTTCATCAAACCTTTTCATTCCATGACTTCCTTTTTCAACATCTCCAGC
CACCagttttctcaattttcttCGCTTTCTATACACAATccgtttttctt
ctttctccAAAAACTTCATCAATTTCACCCACCAATCAATAAGTTCATCC
ATATCACCCGTATAAAGGATTCCTTCTTTATTTGCATCCCAGAAGGACGA
ATGTCTATAAATTTGCAGGTTTCCAAAAAACTGATATGAAAAAAGTATGA
GTAAGCTCTGACAGCATAGCGAAATGTTGAAATGAAACCATCTATATTTC
CCTTGTGTAAGCCCCGTTTTTGCCCACTTAGCAAACTGTAAGCCACAAAT
CAGTGCAGCTAAAGAGAAATTTAGCTCTTTG Run BLAST on NCBI protein sequence of TCONS_00035673-protein >TCONS_00035673-protein ID=TCONS_00035673-protein|Name=TCONS_00035673-protein|organism=Clytia hemisphaerica|type=polypeptide|length=138bp
KELNFSLAALICGLQFAKWAKTGLTQGKYRWFHFNISLCCQSLLILFSYQ
FFGNLQIYRHSSFWDANKEGILYTGDMDELIDWWVKLMKFLEKEEKRIVY
RKRRKLRKLVAGDVEKGSHGMKRFDEHLNEFSFKKDLP Run BLAST on NCBI transcript from alignment at sc0001348:3335..5865 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035673 ID=TCONS_00035673|Name=TCONS_00035673|organism=Clytia hemisphaerica|type=transcript|length=2531bp|location=Sequence derived from alignment at sc0001348:3335..5865 (Clytia hemisphaerica)
CAAAGAGCTAAATTTCTCTTTAGCTGCACTGATTTGTGGCTTACAGTTTG
CTAAGTGGGCAAAAACGGGGCTTACACAAGGGAAATATAGATGGTTTCAT
TTCAACATTTCGCTATGCTGTCAGAGCTTACTCATACTTTTTTCATATCA
GTTTTTTGGAAACCTGCAAATTTATAGACATTCGTCCTTCTGGGATGCAA
ATAAAGAAGGAATCCTTTATACGGGTGATATGGATGAACTTATTGATTGG
TGGGTGAAATTGATGAAGTTTTTggagaaagaagaaaaacggATTGTGTA
TAGAAAGCGaagaaaattgagaaaactGGTGGCTGGAGATGTTGAAAAAG
GAAGTCATGGAATGAAAAGGTTTGATGAACAtttgaatgaattttctttt
aaaaaggacttaccttaagtggataaattttcgcgtggatTTTTTTTCGC
GAATCGAAAATCGAAAATTTTCGCgtggactaaatttcgcgaatcagcct
ctttttcacctaatttctttcattttcctaggggttttggcaaaaatcat
aattttaaatttttcgcgtggacaaaatttcgcgaaaatggccaaaatac
gcgaaaatcgcgaaaattaatccacgggaaaatttatccacttaaggtaa
atgAACACATTAAAGGTATTTAtcctgattttgaaaatttatttaattta
ttgtcTCTTGATGAGACGGTTTTAGGGGGTTCTCAAGGGAGGGATTCTAC
GGAGAGTTCTCAAGGGATTGCGTCATCTGGGGACAAAGGGGATACGTCTA
GTAATGAGGATTCTCAAGGGAGGGATTCTACTGTTATTTCTGATTCACGC
TTGAACAAAACTAATCTGAATCAAAAAACTGCAGTAGAATTAGAATTAGG
GGAGGGAAAGGGGACACGCCTTGAAGGTGTTTTTATATCTGACAATATTT
TAAATCTTTCTAAGAGAGAACTGAATGATGCTGAGATTTCTTTATTGTCC
AAGGGATTGAAGTTTGTACCTACCCCATCCTTTTCTGATAGAGCAGCCAT
TAAGACCGATTTGGAGCGTTTTGGGAGGAGGCTGCGTCTAGCTTGGCATT
TTCGGGATGAAGGACCCTATATTCATAATCCTTTTAAGAAAAAGAGCAAC
TTCAATCCCAAGGGCAAAGATGCTGCCATTGAAATTTATTTAAGTAGATT
AGAAGAGGAAATTCTCAACatcaatacaaaaataaaacatcataATGTGA
CAAGGGAGGAGAGAAAAGCGATTGCTAGCTTGAGAAATGACAATTCTATT
ATTATAAAAGGGGCTGACAAAGGTTCGGGGATAGTGATCTGGGATAGGGA
AGATTATCTTAAAGAGGCCGAGTCTCAGCTTAGTGACGAAAACGTCTATG
AGAGACTCGAGGATGATGCTGTCGGTCCTCTTGTTCAGACAATAAAATCC
TGTCTAAACAAGATCAATGATAGAGGTGACATTTCTCATGAGACACTGGA
CTATTTTCTTGTCAACAATCCCAAGTTAGGTCGCTTTTATTTATTACCTA
AAATTCACAAGCGGCTCTATAACGTTCCAGGTCGACCAGTGATTTCTAAT
TCTTCGTTTTACACGGAGAACATTTCggcttttttagattttcatctTCA
ACCACTGGCTCAAAAGGTTAAGTCATTTATAAAAGACACTAATGACTTTT
TGAGGAaactttcttctctttcttcatTGCCACAAGATGTTTTATTATGC
ACAGTAGACGTAGTTGGCCTATATCCTAACATTCCTCATGATGAAGGACT
GCAGGCATTAAAACTCGCTCTGGATGAACGagaagacaaaaatatttcGA
CTGAAAGTCTTCTCGATTTGGCTGATTGTGTGctcaaaaataatgttttc
gaGCACAATGGTAAAATTTACAAACAGAAGCGAGGAACAGCGATTGGGAC
AAAAATGGCCCCTTCGTATGCTATTCTATTTATGGACATGTTGGAAAAAC
GTTTATTGGACAATTTCCCTCTTAAGCCTTTAGTCTGGTGGAGATACATC
GACGATGTCTTTTTGCTTTGGGAACACGGGGAAGAGTCTTTAAACGAATT
TCTGACATATCTGAATGCCGAGCATCCTTCTATCAAATTTACGGCAGACT
TTTCCGACTCAGAAATCAATTTCTTGGATGTTAAGGTCAGTCGTAAAGGG
GATAAGTTAGAGACCGACCTCTATGTAAAACCAACTGACACGCACCAATA
TCTTGATGCAACATCTTGCCATCCGGATCATTGTAAGACGTCTATACCAT
ATAGTCAAACATTAAGGCTAAACCGTATCTGTTCGAAGCCCGAGTTGTTT
GACAAAAGATGCGATGATTTGGAAAAGTGGCTACTCAAGCNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNcacctgatttctaggtgaaccaa
gctctataattttagaactttgtctggctgaggtaaaacttattttttct
aaaattttgagcttggatatccaggctagat Coding sequence (CDS) from alignment at sc0001348:3335..5865 >TCONS_00035673 ID=TCONS_00035673|Name=TCONS_00035673|organism=Clytia hemisphaerica|type=CDS|length=417bp|location=Sequence derived from alignment at sc0001348:3335..5865 (Clytia hemisphaerica)
AAAGAGCTAAATTTCTCTTTAGCTGCACTGATTTGTGGCTTACAGTTTGC
TAAGTGGGCAAAAACGGGGCTTACACAAGGGAAATATAGATGGTTTCATT
TCAACATTTCGCTATGCTGTCAGAGCTTACTCATACTTTTTTCATATCAG
TTTTTTGGAAACCTGCAAATTTATAGACATTCGTCCTTCTGGGATGCAAA
TAAAGAAGGAATCCTTTATACGGGTGATATGGATGAACTTATTGATTGGT
GGGTGAAATTGATGAAGTTTTTggagaaagaagaaaaacggATTGTGTAT
AGAAAGCGaagaaaattgagaaaactGGTGGCTGGAGATGTTGAAAAAGG
AAGTCATGGAATGAAAAGGTTTGATGAACAtttgaatgaattttctttta
aaaaggacttaccttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035673-exon-sc0001348-1491911889:3335..5865 | TCONS_00035673-exon-sc0001348-1491911889:3335..5865 | Clytia hemisphaerica | exon |
| TCONS_00035673-exon-sc0001348-1510915933:3335..5865 | TCONS_00035673-exon-sc0001348-1510915933:3335..5865 | Clytia hemisphaerica | exon |
| TCONS_00035673-exon-sc0001348-1575043694:3335..5865 | TCONS_00035673-exon-sc0001348-1575043694:3335..5865 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001348 | supercontig | sc0001348:3335..5865 . |
Blast
The following BLAST results are available for this feature:
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