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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035668 ID=TCONS_00035668|Name=TCONS_00035668|organism=Clytia hemisphaerica|type=transcript|length=1688bp
cCTTTTTGGTGCTTTTCCCTGACTGATCTTCAAAGTTTCCAAAATTACCA
AAGTCGTTGGTAGGTTTTGATTCAGCAAAACCACCGAAATCAGCAAATCC
ATTTACACTTTCCATCTCTTGTTCCGCAGTCCCGAAATCcccaaattttg
tttcttttgtggCACAAGTATTGCTGTCAAATGCTCCGAAGTCACCAAAT
TCGCTTGATGACGATTCTGCATTTGTATTGCCTTTTTCAGAATCTGAAGT
TTTGGTTTCAATAGCATTATTTGTAGTATTACTATCAAATGCGCCAAAGT
CATCAAAACCtgaattttcattgtttttaaattcaGATTCGGATTTTAAT
TCAGTTGCATTATTTGTATTGCTATCAAATGCTCCGAAGTCACCAAAATT
GCTTGATGAAGATTCTGCATTTGTATTGCCTTTTTCAGAATCTGAAGTTT
TGGTTTCAATAGCATTCGTTGTATTACTATCAAATGAGCCAAAGTCATCA
AAACCtgcattttcattgtttttgaattCAGATTCGAATTTTAATTCAGT
TGCACTATTTGTATTATTGTCAAATGCTCCAAAGTCACCAAAATCATTAG
ATGCAGAATCTGtatttttattgtcttttaacTCTGGATTTGATTTGCAT
TCAGGTGAATCTGAAGGTTTGGTTTCGCTATCAAATGCTCCAAAATCACC
GAAATCATCGGATGTGGAATCTACATCGTTATTGTCTTTTGTTTTGGAAT
CTTGTTTAGCTGCAGATGTGCCTGTACTGTCAAATGCATCAAAATCACCG
AAATCGTTTGAAGCTGAATCTTCCATCTCATCCAAGATCGGTTGATGTGT
GTTGTTATCAAatgtcccaaaatcaccaaagtCTTCAGATGCACTTAGTT
TAGAATGGGTAAATTCAGAATCAGTTTTAACTTCACTTTCGATATTTGTT
TTACTACCAAATACATCAAAAGCACCAAATTCATCAGATTCCTCGTTAGC
TGTAAGTTCTGGTGTTAATTCGAAATCATTTGAAGAAATCTCTTGTTTTT
CAGTGCTACTATTGACattatcaaaatcatcaaattttgatGTCGCATCT
TTACTTTCAAATGAATCAAAATTACCAAAGTCACCAGTAATGGATTCTGG
ATTGTCATTAACATTCTCTGATGTCTCTTGGTTGAGATCCTTGCTATCGc
tttgaaaattatcaaaatccccaaaatcagtttcagATCTTGATTTTTCA
TTCTCCAATTGTTGGCAATCATCTATTGTCTTATTGATGATGTTATCAGT
GGTTTTCTCAGATTGTCCTAAATCATTCAAGTCTGTAACAGATGCTGATG
CATCCAAGTCATTTTCAACTTTATCTGAATCTTGTTCAGCATTGTCAAAA
GATCCAAAGTCACCAAaatcattttgatcattttgagaATCACATGTTTT
CCCATCTTGCAATTGGACATTATTTGAATCATCAAGTGCACTTTCTGACT
TATCATCATTTTCAACTATTTCTATGTGTGAACTTGATGTGTCTTTCTCA
AGATCTGGTTTAGTTTCTGTATCAGAATGATCAATTGCTGGTGATTCAAA
TATGTTGGTTTTTGGTTCATCTTGATTCTTGGATACATCATTGTCAGTGG
TTGAAAAGTTTCCGAATGTCTCATTATTTTCAGTTTCT Run BLAST on NCBI transcript from alignment at sc0001348:66160..67904+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035668 ID=TCONS_00035668|Name=TCONS_00035668|organism=Clytia hemisphaerica|type=transcript|length=1745bp|location=Sequence derived from alignment at sc0001348:66160..67904+ (Clytia hemisphaerica)
cCTTTTTGGTGCTTTTCCCTGACTGATCTTCAAAGTTTCCAAAATTACCA
AAGTCGTTGGTAGGTTTTGATTCAGCAAAACCACCGAAATCAGCAAATCC
ATTTACACTTTCCATCTCTTGTTCCGCAGTCCCGAAATCcccaaattttg
tttcttttgtggCACAAGTATTGCTGTCAAATGCTCCGAAGTCACCAAAT
TCGCTTGATGACGATTCTGCATTTGTATTGCCTTTTTCAGAATCTGAAGT
TTTGGTTTCAATAGCATTATTTGTAGTATTACTATCAAATGCGCCAAAGT
CATCAAAACCtgaattttcattgtttttaaattcaGATTCGGATTTTAAT
TCAGTTGCATTATTTGTATTGCTATCAAATGCTCCGAAGTCACCAAAATT
GCTTGATGAAGATTCTGCATTTGTATTGCCTTTTTCAGAATCTGAAGTTT
TGGTTTCAATAGCATTCGTTGTATTACTATCAAATGAGCCAAAGTCATCA
AAACCtgcattttcattgtttttgaattCAGATTCGAATTTTAATTCAGT
TGCACTATTTGTATTATTGTCAAATGCTCCAAAGTCACCAAAATCATTAG
ATGCAGAATCTGtatttttattgtcttttaacTCTGGATTTGATTTGCAT
TCAGGTGAATCTGAAGGTTTGGTTTCGCTATCAAATGCTCCAAAATCACC
GAAATCATCGGATGTGGAATCTACATCGTTATTGTCTTTTGTTTTGGAAT
CTTGTTTAGCTGCAGATGTGCCTGTACTGTCAAATGCATCAAAATCACCG
AAATCGTTTGAAGCTGAATCTTCCATCTCATCCAAGATCGGTTGATGTGT
GTTGTTATCAAatgtcccaaaatcaccaaagtCTTCAGATGCACTTAGTT
TAGAATGGGTAAATTCAGAATCAGTTTTAACTTCACTTTCGATATTTGTT
TTACTACCAAATACATCAAAAGCACCAAATTCATCAGATTCCTCGTTAGC
TGTAAGTTCTGGTGTTAATTCGAAATCATTTGAAGAAATCTCTTGTTTTT
CAGTGCTACTATTGACattatcaaaatcatcaaattttgatGTCGCATCT
TTACTTTCAAATGAATCAAAATTACCAAAGTCACCAGTAATGGATTCTGG
ATTGTCATTAACATTCTCTGATGTCTCTTGGTTGAGATCCTTGCTATCGc
tttgaaaattatcaaaatccccaaaatcagtttcagATCTTGATTTTTCA
TTCTCCAATTGTTGGCAATCATCTATTGTCTTATTGATGATGTTATCAGT
GGTTTTCTCAGATTGTCCTAAATCATTCAAGTCTGTAACAGATGCTGATG
CATCCAAGTCATTTTCAACTTTATCTGAATCTTGTTCAGCATTGTCAAAA
GATCCAAAGTCACCAAaatcattttgatcattttgagaATCACATATTTT
CCCATCTTGCAATTNGTCACCAAaatcattttgatcattttgagaATCAC
ATGTTTTCCCATCTTGCAATTGGACATTATTTGAATCATCAAGTGCACTT
TCTGACTTATCATCATTTTCAACTATTTCTATGTGTGAACTTGATGTGTC
TTTCTCAAGATCTGGTTTAGTTTCTGTATCAGAATGATCAATTGCTGGTG
ATTCAAATATGTTGGTTTTTGGTTCATCTTGATTCTTGGATACATCATTG
TCAGTGGTTGAAAAGTTTCCGAATGTCTCATTATTTTCAGTTTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035668-exon-sc0001348-1491911889:66160..67602 | TCONS_00035668-exon-sc0001348-1491911889:66160..67602 | Clytia hemisphaerica | exon |
| TCONS_00035668-exon-sc0001348-1510915933:66160..67602 | TCONS_00035668-exon-sc0001348-1510915933:66160..67602 | Clytia hemisphaerica | exon |
| TCONS_00035668-exon-sc0001348-1575043694:66160..67602 | TCONS_00035668-exon-sc0001348-1575043694:66160..67602 | Clytia hemisphaerica | exon |
| TCONS_00035668-exon-sc0001348-1491911889:67660..67904 | TCONS_00035668-exon-sc0001348-1491911889:67660..67904 | Clytia hemisphaerica | exon |
| TCONS_00035668-exon-sc0001348-1510915933:67660..67904 | TCONS_00035668-exon-sc0001348-1510915933:67660..67904 | Clytia hemisphaerica | exon |
| TCONS_00035668-exon-sc0001348-1575043694:67660..67904 | TCONS_00035668-exon-sc0001348-1575043694:67660..67904 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001348 | supercontig | sc0001348:66160..67904 + |
Blast
The following BLAST results are available for this feature:
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