TCONS_00035667 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035667
Unique NameTCONS_00035667
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length347

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035667 ID=TCONS_00035667|Name=TCONS_00035667|organism=Clytia hemisphaerica|type=transcript|length=347bp
CGTTCACAGGTGCCATTGTTATCCTAACGAATTCCGTGCATAAAATTTTG
TTGGGTACGGTGCAAGGTGTATCCGTTGCTTTTATACAAGTAGCAAGCGC
TACTGCACCGTACGCTTACGGGACAATATACTCGTGGTCGCTAAGTAACA
TCAAAGGAATCACCAAAAACACCGATCCTTTGGGATTCCCCTTCGATCCA
CATTTTCCGTATATCATCATGTCTGTTGTTTCTCTCGTCGTACTAGCACT
TGTATATTTTGTTAAAGAAATTGAAGATGTCCAAGAAATTAATAATGTTA
GAGAAAACGATAAAATTGCTGACTATGAGTTGCCGTCGTTACCGACA
Run BLAST on NCBI

protein sequence of TCONS_00035667-protein

>TCONS_00035667-protein ID=TCONS_00035667-protein|Name=TCONS_00035667-protein|organism=Clytia hemisphaerica|type=polypeptide|length=115bp
FTGAIVILTNSVHKILLGTVQGVSVAFIQVASATAPYAYGTIYSWSLSNI
KGITKNTDPLGFPFDPHFPYIIMSVVSLVVLALVYFVKEIEDVQEINNVR
ENDKIADYELPSLPT
Run BLAST on NCBI

transcript from alignment at sc0001348:28749..29497+

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035667 ID=TCONS_00035667|Name=TCONS_00035667|organism=Clytia hemisphaerica|type=transcript|length=749bp|location=Sequence derived from alignment at sc0001348:28749..29497+ (Clytia hemisphaerica)
CGTTCACAGGTGCCATTGTTATCCTAACGAATTCCGTGCATAAAATTTTG
TTGGGTACGGTGCAAGGTGTATCCGTTGCTTTTATACAAGTAGCAAGGTA
GAGGTTTTTTATTAAATAACTGTTTTACGTTCCTTGACCCTTCTCAGAGA
AAATCATAATAGAAAAAGTAGGTTTGTCCCTTTTATAAATTATATGGTAC
AGTACAGTTTGGGGTAAGATTCCACTTCCCAGCCTAAGATTCAACCACTC
ACAGCGGAAAAATAAACTTCAGGAAGTCAGCAGGTCTCTTCATTCGACAC
AAACTATTTGTCAGAGAGTGGAATCTTAGTCTGATAACTGTAATCTTATA
ATAATAAATCTTCCCTTTTTGACCAAGggtaatgaaattttgaaatttga
tacaCAAACCTATTATGTGAAGggattttttaatctttgttttctGACCC
AAGAGGCTAATCCAATTGGGTTTAAATGGATACCATCTTCTTTTTTCAGC
GCTACTGCACCGTACGCTTACGGGACAATATACTCGTGGTCGCTAAGTAA
CATCAAAGGAATCACCAAAAACACCGATCCTTTGGGATTCCCCTTCGATC
CACATTTTCCGTATATCATCATGTCTGTTGTTTCTCTCGTCGTACTAGCA
CTTGTATATTTTGTTAAAGAAATTGAAGATGTCCAAGAAATTAATAATGT
TAGAGAAAACGATAAAATTGCTGACTATGAGTTGCCGTCGTTACCGACA

Coding sequence (CDS) from alignment at sc0001348:28749..29497+

>TCONS_00035667 ID=TCONS_00035667|Name=TCONS_00035667|organism=Clytia hemisphaerica|type=CDS|length=690bp|location=Sequence derived from alignment at sc0001348:28749..29497+ (Clytia hemisphaerica)
TTCACAGGTGCCATTGTTATCCTAACGAATTCCGTGCATAAAATTTTGTT
GGGTACGGTGCAAGGTGTATCCGTTGCTTTTATACAAGTAGCAAGCGCTA
CTGCACCGTACGCTTACGGGACAATATACTCGTGGTCGCTAAGTAACATC
AAAGGAATCACCAAAAACACCGATCCTTTGGGATTCCCCTTCGATCCACA
TTTTCCGTATATCATCATGTCTGTTGTTTCTCTCGTCGTACTAGCACTTG
TATATTTTGTTAAAGAAATTGAAGATGTCCAAGAAATTAATAATGTTAGA
GAAAACGATAAAATTGCTGACTATGAGTTGCCGTCGTTACCGACATTCAC
AGGTGCCATTGTTATCCTAACGAATTCCGTGCATAAAATTTTGTTGGGTA
CGGTGCAAGGTGTATCCGTTGCTTTTATACAAGTAGCAAGCGCTACTGCA
CCGTACGCTTACGGGACAATATACTCGTGGTCGCTAAGTAACATCAAAGG
AATCACCAAAAACACCGATCCTTTGGGATTCCCCTTCGATCCACATTTTC
CGTATATCATCATGTCTGTTGTTTCTCTCGTCGTACTAGCACTTGTATAT
TTTGTTAAAGAAATTGAAGATGTCCAAGAAATTAATAATGTTAGAGAAAA
CGATAAAATTGCTGACTATGAGTTGCCGTCGTTACCGACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020899XLOC_020899Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035667-proteinTCONS_00035667-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035667-exon-sc0001348-1491911889:28749..28845TCONS_00035667-exon-sc0001348-1491911889:28749..28845Clytia hemisphaericaexon
TCONS_00035667-exon-sc0001348-1510915933:28749..28845TCONS_00035667-exon-sc0001348-1510915933:28749..28845Clytia hemisphaericaexon
TCONS_00035667-exon-sc0001348-1575043694:28749..28845TCONS_00035667-exon-sc0001348-1575043694:28749..28845Clytia hemisphaericaexon
TCONS_00035667-exon-sc0001348-1491911889:29248..29497TCONS_00035667-exon-sc0001348-1491911889:29248..29497Clytia hemisphaericaexon
TCONS_00035667-exon-sc0001348-1510915933:29248..29497TCONS_00035667-exon-sc0001348-1510915933:29248..29497Clytia hemisphaericaexon
TCONS_00035667-exon-sc0001348-1575043694:29248..29497TCONS_00035667-exon-sc0001348-1575043694:29248..29497Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001348supercontigsc0001348:28749..29497 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
15.2857	18.0312	18.2999	11.468	1.77939	0.821884	0	0	0.398474	0	0.520922	0	0.170979	0.177563	0.291962	0	0.396377	0.41776	0	0.836823	2.60241	1.49612	8.00007	8.38228	0.856868	1.0609	4.96718	6.44536	3.17909	6.39584
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR020846MFS_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035667 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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