TCONS_00035660 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035660
Unique NameTCONS_00035660
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1906

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035660 ID=TCONS_00035660|Name=TCONS_00035660|organism=Clytia hemisphaerica|type=transcript|length=1906bp
CTTTATGATTGTCAGAAAGCTATACTGAATGAGTTCCTGACTGGTTCGAA
ACATACATTTTTTAGTGCACCAACAGGTTATGGAAAGTCCTTAACATTTC
AGTGTTTACCATGGGCATATGACACCTACCATGATAATGAAATATGCACA
TCAAGCATAATTATAGTCTCACCCCTTGTGTCATTGATTGAAGATCAACT
TTTAAAGGCAAAAAACTAGGCATTCCTGCAATATATTTAAGTGAAGAAAA
GTTAAATGAAAGTGGTGACATCGACAAAGCTTATCAAGATATTCAAGAGG
GATGGTATTCTTTGATCTATGCTTGCCCAGAGGGTTTACTACAGAGTAGC
CGCTGGCGAAAAGTGATATCAAGTCAAGAATTTAGGAAACATCGTATTGG
AGTTGTAATAGACGAAGCACATGTATTAGTCCAGTGGGGCCTTTCAACAG
ACTCAAGAAAGCCCTTTCGCAAATGGTATGCTGCTTTGCATGAGCTGCAG
TCGTTATTGGGCAATGAAATTAAATATTCTCTGTTCACTGCTACAGCAAC
GCATTTAACAAGATCAAAGATCTTTTTAATGCTAGGATTGGAGGAGAGTA
ActtttacattttaaataagcacccaaacaaaaataatattagatATTGT
GTGAAACAAATATGTAGAGGTGAGATCATTGAACATTTCAAAGAAGTCAT
TGacacattaaaaaagaaaaagcataCTGCAGAACGTGTTCTGATTTATT
ATCAAGCAAAAGTACCAGCCCAAATTTTGTTCAATAACATTTGTTATGAG
CTTGGAGATCACCTTTACTATATGGAAAAAAAACCTCCGAACCGCATTGT
TGAAGTTTTTACTGCTGATAGTCCTTCAAGTGTAAAAAAACATGTTGTGA
ATGAAATGGCAAAATCTGAAAGCCACCTAAGGTGTCTTATATGTACATCA
GCCTTTGGGATGGGTATTGATGTACAAGGTGTAACAAAGTCTATTCATTT
TGCACCTCCTCAAACACTTGAAAGTTTTGTGCAAGAAAGTGGTAGAATTG
GTCGAAATGGTGAAAAAAGTACCAGCATAATTCTGAGTAACAGTATTTTA
CAAGGCAAGTGTGATCAGTCGATGAGAGAATTTCTTACCACTTTGGAATG
TAGAAGGGCAAAGTGTATGTCATTGTTTCCAGGAGACTATACTAAACCTA
TACGTGATTGTGAGTGTTGTGATGTTTGCTACAAGAAGTGCTCATGTGGA
GATTGCAGTCCAATGTACAGAAGTTTAACGAATAAGCCATCTACTGAAAA
AGAAAGGAGCAGATCAGTAAATCAAGAACAAAGAACAACTCtgaaaggtt
tcctagaaaacTATCGCATTTCCTATTTCCAACAAACAAGGCTAGTGAAA
CAAGTCTCCTTACCAAACATGTTTTTTGAGTTCAATGAATATCATGTGAA
CCAAGTGATGTGTAATGTCAGCAAGATTTTTTCAATCTCTGATGTCATGG
ACAGGGTTGAAATATGGAGGCCAGTGCATGCTAGACAAATTATTCAAtgc
ttttcaaaagtttttgacgATGTTTGCTTTGATGGAATGGACATGGAAAA
GGTTGAGGAGTCACCTAATATTGATCCTCATTGGTTATCTATTTTGAATA
ATACTAGTCAACAACATAGTCTTAATGACTCAGATTTTTCACGAATTTGT
CAACTGTCAGAAAATGCCTTTGAATCTTCTCAATCAAAGAGATCATTGGA
TGATATTGACTGTGATGATACCATGTAAatgttttgtttaattttttgca
tgaataAATGATAAATAATAGGGACCCCAGCAGTTGGGAAAAACCTAGCC
TGGAGACCACTTTAGGTTATTGATGGACTGGGCGGACACAATAAAATGGC
CCGGAG
Run BLAST on NCBI

protein sequence of TCONS_00035660-protein

>TCONS_00035660-protein ID=TCONS_00035660-protein|Name=TCONS_00035660-protein|organism=Clytia hemisphaerica|type=polypeptide|length=399bp
MLGLEESNFYILNKHPNKNNIRYCVKQICRGEIIEHFKEVIDTLKKKKHT
AERVLIYYQAKVPAQILFNNICYELGDHLYYMEKKPPNRIVEVFTADSPS
SVKKHVVNEMAKSESHLRCLICTSAFGMGIDVQGVTKSIHFAPPQTLESF
VQESGRIGRNGEKSTSIILSNSILQGKCDQSMREFLTTLECRRAKCMSLF
PGDYTKPIRDCECCDVCYKKCSCGDCSPMYRSLTNKPSTEKERSRSVNQE
QRTTLKGFLENYRISYFQQTRLVKQVSLPNMFFEFNEYHVNQVMCNVSKI
FSISDVMDRVEIWRPVHARQIIQCFSKVFDDVCFDGMDMEKVEESPNIDP
HWLSILNNTSQQHSLNDSDFSRICQLSENAFESSQSKRSLDDIDCDDTM
Run BLAST on NCBI

transcript from alignment at sc0001347:37153..40209-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035660 ID=TCONS_00035660|Name=TCONS_00035660|organism=Clytia hemisphaerica|type=transcript|length=3057bp|location=Sequence derived from alignment at sc0001347:37153..40209- (Clytia hemisphaerica)
CTTTATGATTGTCAGAAAGCTATACTGAATGAGTTCCTGACTGGTTCGAA
ACATACATTTTTTAGTGCACCAACAGGTATATACTACTGTCATACTGTCA
ATGCTTTTTTCCCAGTTTCTTCAAAGTGTGTATGTATAGGATAATAATGT
GTGTGGTTTTGAGTCTTTTAGAGGGGGAGATTCCAAACACCAAATAAAGT
TGAAACAATTGACTGAACTGTTGTCATCATACTTGGGCAGATATAGCTAG
AGCTTACATTATTTTTAAGCCCATTTTTTCCAACTTTCAGGTTATGGAAA
GTCCTTAACATTTCAGTGTTTACCATGGGCATATGACACCTACCATGATA
ATGAAATATGCACATCAAGCATAATTATAGTCTCACCCCTTGTGTCATTG
ATTGAAGATCAACTTTTAAAGGCAAAAAACTAGGCATTCCTGCAATATAT
TTAAGTGAAGAAAAGTTAAATGAAAGTGGTGACATCGACAAAGCTTATCA
AGGTATATAACAAATGTATTTTTATAGAAAAAAGTGATGTTTATCTTCTT
AGTTATGTATATAATTAAAATTTCCATTTCATAAACAGGCACATTTTTTG
AATAGATTAATAAAATTCACCACAGGTGACCAGAAATTTATATCTCACAA
TTTTGCATATATTTCAAGATGTCGACTGAACTATAAATGGCCAGTATATA
GTATAATTTGAATTCGATTTATATTATTAGATATTCAAGAGGGATGGTAT
TCTTTGATCTATGCTTGCCCAGAGGGTTTACTACAGAGTAGCCGCTGGCG
AAAAGTGATATCAAGTCAAGAATTTAGGAAACATCGTATTGGAGTTGTAA
TAGACGAAGCACATGTATTAGTCCAGTGGTTAGTATCACCTTTGTAGCAT
GACCTCTGTGAGAATTTTTCTCAATTTTGTTCTGCTTTTTTGTATCATTA
TGCCTAAATTTTACCAAAAATGATCTTCTAGCACAAACTATTATTTCTGA
TTTAAAAAGTATATATAACGAATTGTGCAAATGTCCAAAATCCCTAAATA
AAAAAGGTTGACTATCATTCAGGATGCTTTAAACCAAACTAACAAGGATA
ACTTGAGGAATAACTAAACTATCTTCACTCCCGATGAATAAAAAATCATG
TTTCAAGCACACCAAAATTATCTTTTTCACGGAAAGTTTAACAAAAACAA
TTTATTTTTACAGGGGCCTTTCAACAGACTCAAGAAAGCCCTTTCGCAAA
TGGTATGCTGCTTTGCATGAGCTGCAGTCGTTATTGGGCAATGAAATTAA
ATATTCTCTGTTCACTGCTACAGCAACGCATTTAACAAGATCAAAGATCT
TTTTAATGCTAGGATTGGAGGAGAGTAACTTTTACATTTTAAATAAGCAC
CCAAACAAAAATAATATTAGATATTGTGTGAAACAAATATGTAGAGGTGA
GATCATTGAACATTTCAAAGAAGTCATTGACACATTAAAAAAGAAAAAGC
ATACTGCAGAACGTGTTCTGATTTATTATCAAGCAAAAGTACCAGCCCAA
ATTTTGTTCAATAACATTTGTTATGAGCTTGGAGATCACCTTTACTATAT
GGAAAAAAAACCTCCGAACCGCATTGTTGAAGTTTTTACTGCTGATAGTC
CTTCAAGTGTAAAAAAACATGTTGTGAATGAAATGGCAAAATCTGAAAGC
CACCTAAGGTGTCTTATATGTACATCAGCCTTTGGGATGGGTATTGATGT
ACAAGGTGTAACAAAGTCTATTCATTTTGCACCTCCTCAAACACTTGAAA
GTTTTGTGCAAGAAAGTGGTAGAATTGGTCGAAATGGTGAAAAAAGTACC
AGCATAATTCTGAGTAACAGTATTTTACAAGGTAAGCCTGTCAATATGAT
TTGATTTGAGGTTTTTCCATTCAATTTTCTTTTTCAACTGTGAGAACTTT
CTGAAAAGTATAAAAATATTTTTTAAAGTCCTCCGGATATCTCGAATGTA
CCTTAAGGGAAGAAATTTTTGCGGGAAGAAATTTTTGCAGAATTTAATTT
TGTGGTTCAAGGCTCAAAATTTGCAAGTTTCGCAGAATTTAATTTTGCAG
TTGTGGGAATTATTTGTCTACGGGAAGCCTTATTTTGCCCTAAAAAGACC
AATTTTAGTGGTGATTTTTTTTTAATTGTGAGAATATTCGTGTTTGGCGA
AAATTTCTTCCCTTAAGGTAGTTAAATATATTTCCTTTGTATACTATTTC
AAAAGGCAAGTGTGATCAGTCGATGAGAGAATTTCTTACCACTTTGGAAT
GTAGAAGGGCAAAGTGTATGTCATTGTTTCCAGGAGACTATACTAAACCT
ATACGTGATTGTGAGTGTTGTGATGTTTGCTACAAGAAGTGCTCATGTGG
AGATTGCAGTCCAATGTACAGAAGTTTAACGAATAAGCCATCTACTGAAA
AAGAAAGGAGCAGATCAGTAAATCAAGAACAAAGAACAACTCTGAAAGGT
TTCCTAGAAAACTATCGCATTTCCTATTTCCAACAAACAAGGCTAGTGAA
ACAAGTCTCCTTACCAAACATGTTTTTTGAGTTCAATGAATATCATGTGA
ACCAAGTGATGTGTAATGTCAGCAAGATTTTTTCAATCTCTGATGTCATG
GACAGGGTTGAAATATGGAGGCCAGTGCATGCTAGACAAATTATTCAATG
CTTTTCAAAAGTTTTTGACGATGTTTGCTTTGATGGAATGGACATGGAAA
AGGTTGAGGAGTCACCTAATATTGATCCTCATTGGTTATCTATTTTGAAT
AATACTAGTCAACAACATAGTCTTAATGACTCAGATTTTTCACGAATTTG
TCAACTGTCAGAAAATGCCTTTGAATCTTCTCAATCAAAGAGATCATTGG
ATGATATTGACTGTGATGATACCATGTAAATGTTTTGTTTAATTTTTTGC
ATGAATAAATGATAAATAATAGGGACCCCAGCAGTTGGGAAAAACCTAGC
CTGGAGACCACTTTAGGTTATTGATGGACTGGGCGGACACAATAAAATGG
CCCGGAG

Coding sequence (CDS) from alignment at sc0001347:37153..40209-

>TCONS_00035660 ID=TCONS_00035660|Name=TCONS_00035660|organism=Clytia hemisphaerica|type=CDS|length=2400bp|location=Sequence derived from alignment at sc0001347:37153..40209- (Clytia hemisphaerica)
GCAAGTGTGATCAGTCGATGAGAGAATTTCTTACCACTTTGGAATGTAGA
AGGGCAAAGTGTATGTCATTGTTTCCAGGAGACTATACTAAACCTATACG
TGATTGTGAGTGTTGTGATGTTTGCTACAAGAAGTGCTCATGTGGAGATT
GCAGTCCAATGTACAGAAGTTTAACGAATAAGCCATCTACTGAAAAAGAA
AGGAGCAGATCAGTAAATCAAGAACAAAGAACAACTCTGAAAGGTTTCCT
AGAAAACTATCGCATTTCCTATTTCCAACAAACAAGGCTAGTGAAACAAG
TCTCCTTACCAAACATGTTTTTTGAGTTCAATGAATATCATGTGAACCAA
GTGATGTGTAATGTCAGCAAGATTTTTTCAATCTCTGATGTCATGGACAG
GGTTGAAATATGGAGGCCAGTGCATGCTAGACAAATTATTCAATGCTTTT
CAAAAGTTTTTGACGATGTTTGCTTTGATGGAATGGACATGGAAAAGGTT
GAGGAGTCACCTAATATTGATCCTCATTGGTTATCTATTTTGAATAATAC
TAGTCAACAACATAGTCTTAATGACTCAGATTTTTCACGAATTTGTCAAC
TGTCAGAAAATGCCTTTGAATCTTCTCAATCAAAGAGATCATTGGATGAT
ATTGACTGTGATGATACCATGTAAATGCTAGGATTGGAGGAGAGTAACTT
TTACATTTTAAATAAGCACCCAAACAAAAATAATATTAGATATTGTGTGA
AACAAATATGTAGAGGTGAGATCATTGAACATTTCAAAGAAGTCATTGAC
ACATTAAAAAAGAAAAAGCATACTGCAGAACGTGTTCTGATTTATTATCA
AGCAAAAGTACCAGCCCAAATTTTGTTCAATAACATTTGTTATGAGCTTG
GAGATCACCTTTACTATATGGAAAAAAAACCTCCGAACCGCATTGTTGAA
GTTTTTACTGCTGATAGTCCTTCAAGTGTAAAAAAACATGTTGTGAATGA
AATGGCAAAATCTGAAAGCCACCTAAGGTGTCTTATATGTACATCAGCCT
TTGGGATGGGTATTGATGTACAAGGTGTAACAAAGTCTATTCATTTTGCA
CCTCCTCAAACACTTGAAAGTTTTGTGCAAGAAAGTGGTAGAATTGGTCG
AAATGGTGAAAAAAGTACCAGCATAATTCTGAGTAACAGTATTTTACAAG
GCAAGTGTGATCAGTCGATGAGAGAATTTCTTACCACTTTGGAATGTAGA
AGGGCAAAGTGTATGTCATTGTTTCCAGGAGACTATACTAAACCTATACG
TGATTGTGAGTGTTGTGATGTTTGCTACAAGAAGTGCTCATGTGGAGATT
GCAGTCCAATGTACAGAAGTTTAACGAATAAGCCATCTACTGAAAAAGAA
AGGAGCAGATCAGTAAATCAAGAACAAAGAACAACTCTGAAAGGTTTCCT
AGAAAACTATCGCATTTCCTATTTCCAACAAACAAGGCTAGTGAAACAAG
TCTCCTTACCAAACATGTTTTTTGAGTTCAATGAATATCATGTGAACCAA
GTGATGTGTAATGTCAGCAAGATTTTTTCAATCTCTGATGTCATGGACAG
GGTTGAAATATGGAGGCCAGTGCATGCTAGACAAATTATTCAATGCTTTT
CAAAAGTTTTTGACGATGTTTGCTTTGATGGAATGGACATGGAAAAGGTT
GAGGAGTCACCTAATATTGATCCTCATTGGTTATCTATTTTGAATAATAC
TAGTCAACAACATAGTCTTAATGACTCAGATTTTTCACGAATTTGTCAAC
TGTCAGAAAATGCCTTTGAATCTTCTCAATCAAAGAGATCATTGGATGAT
ATTGACTGTGATGATACCATGTAAATGCTAGGATTGGAGGAGAGTAACTT
TTACATTTTAAATAAGCACCCAAACAAAAATAATATTAGATATTGTGTGA
AACAAATATGTAGAGGTGAGATCATTGAACATTTCAAAGAAGTCATTGAC
ACATTAAAAAAGAAAAAGCATACTGCAGAACGTGTTCTGATTTATTATCA
AGCAAAAGTACCAGCCCAAATTTTGTTCAATAACATTTGTTATGAGCTTG
GAGATCACCTTTACTATATGGAAAAAAAACCTCCGAACCGCATTGTTGAA
GTTTTTACTGCTGATAGTCCTTCAAGTGTAAAAAAACATGTTGTGAATGA
AATGGCAAAATCTGAAAGCCACCTAAGGTGTCTTATATGTACATCAGCCT
TTGGGATGGGTATTGATGTACAAGGTGTAACAAAGTCTATTCATTTTGCA
CCTCCTCAAACACTTGAAAGTTTTGTGCAAGAAAGTGGTAGAATTGGTCG
AAATGGTGAAAAAAGTACCAGCATAATTCTGAGTAACAGTATTTTACAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020892XLOC_020892Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035660-proteinTCONS_00035660-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035660-exon-sc0001347-1575043694:40134..40209TCONS_00035660-exon-sc0001347-1575043694:40134..40209Clytia hemisphaericaexon
TCONS_00035660-exon-sc0001347-1575043694:39708..39919TCONS_00035660-exon-sc0001347-1575043694:39708..39919Clytia hemisphaericaexon
TCONS_00035660-exon-sc0001347-1575043694:39332..39479TCONS_00035660-exon-sc0001347-1575043694:39332..39479Clytia hemisphaericaexon
TCONS_00035660-exon-sc0001347-1575043694:38329..38996TCONS_00035660-exon-sc0001347-1575043694:38329..38996Clytia hemisphaericaexon
TCONS_00035660-exon-sc0001347-1575043694:37153..37954TCONS_00035660-exon-sc0001347-1575043694:37153..37954Clytia hemisphaericaexon
TCONS_00035660-exon-sc0001347-1510915933:40134..40209TCONS_00035660-exon-sc0001347-1510915933:40134..40209Clytia hemisphaericaexon
TCONS_00035660-exon-sc0001347-1510915933:39708..39919TCONS_00035660-exon-sc0001347-1510915933:39708..39919Clytia hemisphaericaexon
TCONS_00035660-exon-sc0001347-1510915933:39332..39479TCONS_00035660-exon-sc0001347-1510915933:39332..39479Clytia hemisphaericaexon
TCONS_00035660-exon-sc0001347-1510915933:38329..38996TCONS_00035660-exon-sc0001347-1510915933:38329..38996Clytia hemisphaericaexon
TCONS_00035660-exon-sc0001347-1510915933:37153..37954TCONS_00035660-exon-sc0001347-1510915933:37153..37954Clytia hemisphaericaexon
TCONS_00035660-exon-sc0001347-1491911889:40134..40209TCONS_00035660-exon-sc0001347-1491911889:40134..40209Clytia hemisphaericaexon
TCONS_00035660-exon-sc0001347-1491911889:39708..39919TCONS_00035660-exon-sc0001347-1491911889:39708..39919Clytia hemisphaericaexon
TCONS_00035660-exon-sc0001347-1491911889:39332..39479TCONS_00035660-exon-sc0001347-1491911889:39332..39479Clytia hemisphaericaexon
TCONS_00035660-exon-sc0001347-1491911889:38329..38996TCONS_00035660-exon-sc0001347-1491911889:38329..38996Clytia hemisphaericaexon
TCONS_00035660-exon-sc0001347-1491911889:37153..37954TCONS_00035660-exon-sc0001347-1491911889:37153..37954Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001347supercontigsc0001347:37153..40209 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.480842	0.591217	0.165697	0.0463168	0.169159	0.245064	0.349416	0.075489	0.211407	0.0872871	0.0211807	0.194927	0.0834242	0.101076	0.142454	0.191094	0.235413	0.225204	0.0222237	0.162789	0.181919	0.0591559	0.119853	0.130756	0.740718	1.02166	0.114666	0.0305936	0.0696126	0.0709242
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001650Helicase_C
IPR011991WHTH_DNA-bd_dom
IPR027417P-loop_NTPase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035660 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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