|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035658 ID=TCONS_00035658|Name=TCONS_00035658|organism=Clytia hemisphaerica|type=transcript|length=288bp
TAGTATAAATAAAATTGTAATCACTGTCAGCTATATTTGGCATCAGAAAA
TTCATCATCAAATtcgaattgaaattgaaatccaGACTTTCAAAGATATG
GCCAATAATTACGCAAGAGGAGCTCCTGCCAATGTTCAAGAAGAGGAACA
TCAACAGCCTTTGGCAGCAGACTTGGACAGAGCCAATGACGAATATTGGA
TGAATTTGTGGTCGAACAATAATAGTGAGATTTTTCAATAATATTCTTCA
CAGTGTTGTTCATTTTTTCTAATTCTTGAATAATTCCA Run BLAST on NCBI transcript from alignment at sc0001347:23187..25704+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035658 ID=TCONS_00035658|Name=TCONS_00035658|organism=Clytia hemisphaerica|type=transcript|length=2518bp|location=Sequence derived from alignment at sc0001347:23187..25704+ (Clytia hemisphaerica)
TAGTATAAATAAAATTGTAATCACTGTCAGCTATATTTGGCATCAGAAAA
TTCATCATCAAATtcgaattgaaattgaaatccaGACTTTCAAAGATATG
GCCAATAATTACGCAAGAGGTAATATTTCTaatgtttttggacctacctt
aagaAGAGGTCCTATACATTAACCTATGCCCGTCCGTTcatccgttcgtc
cgtccgacCGTCTGTTATTAGGTTTTCTGGGGATTTATAAGCTTAGATCA
ATGTTCCTAACCAAATAACTCAAGTTTTAGATAATAAATAGTCTCTTCCT
TCCAACCTCCTCCCTTAATTCCACCCAATGGGCACGGgggacaatcaatg
atgaaaacacacccccttctcacagacccactgggaaacccttcccactg
aaaaaattggccaaaataacATCCCctgtggaaaattatcctccaatttt
tgtccccattgaagataatcaaataaacttatcctcactgcaaaacaatt
taaatatttttgttatccCCATTGAatcttctgacttgaaaacaaaagag
ttGACATCCggccagccataaaaaatataggTATATATCCCCACtgagtt
ttagtccgttatttttatccccactggctgaaaaaatcctaccgggtctg
tgtgAAGGGGAATAACTTTAATAAACTGTCACTTTTTATGCTCTGAATGA
CTGTAGAAAAATACAGGACTGGTTCtgttttttaaggattttagaaTAAG
AATTTGATCTCCTGCTTTTTTTCTCGTTCATTTGTTCAGGAGCTCCTGCC
AATGTTCAAGAAGAGGAACATCAACAGCCTTTGGCAGCAGGTATTTTATA
TTGATTATAAATAAACTCTTTATTCCATGAATAAAATTTTGACCCCTTAA
CTCGCATCAGTATTCTAGGATATTCGAATTGCTCAAAAACAGTTTTATTA
ATGTAGATGCTTAACTTTTATCACGCATAAGacaatcctaccgggtctgt
gtgAAGGGGTTGTGAACGAACGAAGGATTTAAATAAATCGTCACTGTTTT
TAtattctgaatgattgttttaacGGTCACGCTCACGTATATATCAATTA
TATATTGGTTAGATGCATAACCAGGTAGGTCCATAAAAGTATCGCTTATT
AATATTTTTTCGACATTGACTGTTTTGACTATGAAGAGACAAGACATACA
CGAGAAAGTTATATTCTTATTAGTCAGCCACAAAAGGATTTTATCCGCTC
TTCAAAATGTCAATTTTTAGGCAATCTTATTTTTCTCTGGATTTGATTAA
GAAAGCAGCAGGAGAAACTTTTCCCTTTAAATGGAGCTGTTCGCCTTTTT
AAATTGCCTATCTGCAAATAATTTTAACAAATATTATGTTTCTTAGACTT
GGACAGAGCTAATGACGAATATTGGATGAATTTGTGGTCGAACAATAATA
GTGAGATTTTTCAATAATATTCTTCACAGTGTTGTTCATTTTTTCTAATT
CTTGAATAATTCCATTCGTAATGATAAATCCTTTCTTAGTACAAACTAAA
CCTTGAAATCTATTACTATTTTTGTAGATCCATCAAACAaacttttatat
attttaaatgTGTGGCCAAATTGAAGCTTGAgaaaagttttttccaattt
cagaTTGCTATTGGAAACATTCaaatttctccaattttttaTACATAGAA
AAATACAGGACTGGTTCtgttttttaaggattttagaaTAAGAATTTGAT
CTCCTGCTTTTTTTCTCGTTCATTTGTTCAGGAGCTCCTGAAGNTCAAGA
AGAGGAACATCAACAGCCTTTGGCAGCAGGTATTTTATATTGATTATAAA
TAAACTCTTTATTCCATGAATAAAAATTTGACCCCTTAACTCGCATCAGT
ATTCTAGGATATTCGAATTGCTCAAAAACAGTTTTATTAATGTAGATGCT
TAACTTTTATCACGTATAAGacaatcctaccgggtctgtgtgAAGGGGTT
GTGAACGAACGAAGGATTTAAATAAATCGTCACTGTTTTTAtattctgaa
tgattgttttaacGGTCCCGCTCACGtatatatcaattatatattgATTA
GATGCATAACCAGGtgggtccataaaagtatcgcttattaatattttttc
gaCATTGACTGTTTTGACTATGAAGAGACAAGACATACGCGAGAAAGTTA
GAGTCTTATTAGTCAGCCACAAAAGGATTTTATCCACTCTTCACAATGGC
CGCTAATTAAATATCcatttttagagaattttttttttctcttgatATGT
TAAAGAAAGCAGCAAGAGAAACTTTTCCCTTTAAATGGAGCTGTCCGCCT
TTTTAAATTGCCTATTTGCAACTAATTTTAACTAATATCATGTTTCTTAG
ACTTGGACAGAGCCAATGACGAATATTGGATGAATTTGTGGTCGAACAAT
AATAGTGAGATTTTTCAATAATATTCTTCACAGTGTTGTTCATTTTTTCT
AATTCTTGAATAATTCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035658-exon-sc0001347-1491911889:23187..23305 | TCONS_00035658-exon-sc0001347-1491911889:23187..23305 | Clytia hemisphaerica | exon |
| TCONS_00035658-exon-sc0001347-1510915933:23187..23305 | TCONS_00035658-exon-sc0001347-1510915933:23187..23305 | Clytia hemisphaerica | exon |
| TCONS_00035658-exon-sc0001347-1575043694:23187..23305 | TCONS_00035658-exon-sc0001347-1575043694:23187..23305 | Clytia hemisphaerica | exon |
| TCONS_00035658-exon-sc0001347-1491911889:23976..24005 | TCONS_00035658-exon-sc0001347-1491911889:23976..24005 | Clytia hemisphaerica | exon |
| TCONS_00035658-exon-sc0001347-1510915933:23976..24005 | TCONS_00035658-exon-sc0001347-1510915933:23976..24005 | Clytia hemisphaerica | exon |
| TCONS_00035658-exon-sc0001347-1575043694:23976..24005 | TCONS_00035658-exon-sc0001347-1575043694:23976..24005 | Clytia hemisphaerica | exon |
| TCONS_00035658-exon-sc0001347-1491911889:24995..25015 | TCONS_00035658-exon-sc0001347-1491911889:24995..25015 | Clytia hemisphaerica | exon |
| TCONS_00035658-exon-sc0001347-1510915933:24995..25015 | TCONS_00035658-exon-sc0001347-1510915933:24995..25015 | Clytia hemisphaerica | exon |
| TCONS_00035658-exon-sc0001347-1575043694:24995..25015 | TCONS_00035658-exon-sc0001347-1575043694:24995..25015 | Clytia hemisphaerica | exon |
| TCONS_00035658-exon-sc0001347-1491911889:25587..25704 | TCONS_00035658-exon-sc0001347-1491911889:25587..25704 | Clytia hemisphaerica | exon |
| TCONS_00035658-exon-sc0001347-1510915933:25587..25704 | TCONS_00035658-exon-sc0001347-1510915933:25587..25704 | Clytia hemisphaerica | exon |
| TCONS_00035658-exon-sc0001347-1575043694:25587..25704 | TCONS_00035658-exon-sc0001347-1575043694:25587..25704 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001347 | supercontig | sc0001347:23187..25704 + |
Blast
The following BLAST results are available for this feature:
|
