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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035657 ID=TCONS_00035657|Name=TCONS_00035657|organism=Clytia hemisphaerica|type=transcript|length=247bp
aTTTTAGTATAAATAAAATTGTAATCACTGTCAGCTATATTTGGCATCAG
AAAATTCATCATCAAATtcgaattgaaattgaaatccaGACTTTCAAAGA
TATGGCCAATAATTACGCAAGAGGAGCTCCTGCCAATGTTCAAGAAGAGG
AACATCAACAGCCTTTGGCAGCAGACTTGGACAGAGCCAATGACGAATAT
TGGATGAATTTGTGGTCGAACAATAATAGATTGAGGTTGAAGGCACG Run BLAST on NCBI transcript from alignment at sc0001347:23183..25854+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035657 ID=TCONS_00035657|Name=TCONS_00035657|organism=Clytia hemisphaerica|type=transcript|length=2672bp|location=Sequence derived from alignment at sc0001347:23183..25854+ (Clytia hemisphaerica)
aTTTTAGTATAAATAAAATTGTAATCACTGTCAGCTATATTTGGCATCAG
AAAATTCATCATCAAATtcgaattgaaattgaaatccaGACTTTCAAAGA
TATGGCCAATAATTACGCAAGAGGTAATATTTCTaatgtttttggaccta
ccttaagaAGAGGTCCTATACATTAACCTATGCCCGTCCGTTcatccgtt
cgtccgtccgacCGTCTGTTATTAGGTTTTCTGGGGATTTATAAGCTTAG
ATCAATGTTCCTAACCAAATAACTCAAGTTTTAGATAATAAATAGTCTCT
TCCTTCCAACCTCCTCCCTTAATTCCACCCAATGGGCACGGgggacaatc
aatgatgaaaacacacccccttctcacagacccactgggaaacccttccc
actgaaaaaattggccaaaataacATCCCctgtggaaaattatcctccaa
tttttgtccccattgaagataatcaaataaacttatcctcactgcaaaac
aatttaaatatttttgttatccCCATTGAatcttctgacttgaaaacaaa
agagttGACATCCggccagccataaaaaatataggTATATATCCCCACtg
agttttagtccgttatttttatccccactggctgaaaaaatcctaccggg
tctgtgtgAAGGGGAATAACTTTAATAAACTGTCACTTTTTATGCTCTGA
ATGACTGTAGAAAAATACAGGACTGGTTCtgttttttaaggattttagaa
TAAGAATTTGATCTCCTGCTTTTTTTCTCGTTCATTTGTTCAGGAGCTCC
TGCCAATGTTCAAGAAGAGGAACATCAACAGCCTTTGGCAGCAGGTATTT
TATATTGATTATAAATAAACTCTTTATTCCATGAATAAAATTTTGACCCC
TTAACTCGCATCAGTATTCTAGGATATTCGAATTGCTCAAAAACAGTTTT
ATTAATGTAGATGCTTAACTTTTATCACGCATAAGacaatcctaccgggt
ctgtgtgAAGGGGTTGTGAACGAACGAAGGATTTAAATAAATCGTCACTG
TTTTTAtattctgaatgattgttttaacGGTCACGCTCACGTATATATCA
ATTATATATTGGTTAGATGCATAACCAGGTAGGTCCATAAAAGTATCGCT
TATTAATATTTTTTCGACATTGACTGTTTTGACTATGAAGAGACAAGACA
TACACGAGAAAGTTATATTCTTATTAGTCAGCCACAAAAGGATTTTATCC
GCTCTTCAAAATGTCAATTTTTAGGCAATCTTATTTTTCTCTGGATTTGA
TTAAGAAAGCAGCAGGAGAAACTTTTCCCTTTAAATGGAGCTGTTCGCCT
TTTTAAATTGCCTATCTGCAAATAATTTTAACAAATATTATGTTTCTTAG
ACTTGGACAGAGCTAATGACGAATATTGGATGAATTTGTGGTCGAACAAT
AATAGTGAGATTTTTCAATAATATTCTTCACAGTGTTGTTCATTTTTTCT
AATTCTTGAATAATTCCATTCGTAATGATAAATCCTTTCTTAGTACAAAC
TAAACCTTGAAATCTATTACTATTTTTGTAGATCCATCAAACAaactttt
atatattttaaatgTGTGGCCAAATTGAAGCTTGAgaaaagttttttcca
atttcagaTTGCTATTGGAAACATTCaaatttctccaattttttaTACAT
AGAAAAATACAGGACTGGTTCtgttttttaaggattttagaaTAAGAATT
TGATCTCCTGCTTTTTTTCTCGTTCATTTGTTCAGGAGCTCCTGAAGNTC
AAGAAGAGGAACATCAACAGCCTTTGGCAGCAGGTATTTTATATTGATTA
TAAATAAACTCTTTATTCCATGAATAAAAATTTGACCCCTTAACTCGCAT
CAGTATTCTAGGATATTCGAATTGCTCAAAAACAGTTTTATTAATGTAGA
TGCTTAACTTTTATCACGTATAAGacaatcctaccgggtctgtgtgAAGG
GGTTGTGAACGAACGAAGGATTTAAATAAATCGTCACTGTTTTTAtattc
tgaatgattgttttaacGGTCCCGCTCACGtatatatcaattatatattg
ATTAGATGCATAACCAGGtgggtccataaaagtatcgcttattaatattt
tttcgaCATTGACTGTTTTGACTATGAAGAGACAAGACATACGCGAGAAA
GTTAGAGTCTTATTAGTCAGCCACAAAAGGATTTTATCCACTCTTCACAA
TGGCCGCTAATTAAATATCcatttttagagaattttttttttctcttgat
ATGTTAAAGAAAGCAGCAAGAGAAACTTTTCCCTTTAAATGGAGCTGTCC
GCCTTTTTAAATTGCCTATTTGCAACTAATTTTAACTAATATCATGTTTC
TTAGACTTGGACAGAGCCAATGACGAATATTGGATGAATTTGTGGTCGAA
CAATAATAGTGAGATTTTTCAATAATATTCTTCACAGTGTTGTTCATTTT
TTCTAATTCTTGAATAATTCCATTCGTAATGATAAATCCTTTCTTAGTAC
AAACTAAACCTTGAAATCTATTACTATTTTTGTAGATCCATCAAACAaac
ttttatatattttaaatgTGTGGCNTCtttctttatttatttattaatta
aAGGATTGAGGTTGAAGGCACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035657-exon-sc0001347-1491911889:23183..23305 | TCONS_00035657-exon-sc0001347-1491911889:23183..23305 | Clytia hemisphaerica | exon |
| TCONS_00035657-exon-sc0001347-1510915933:23183..23305 | TCONS_00035657-exon-sc0001347-1510915933:23183..23305 | Clytia hemisphaerica | exon |
| TCONS_00035657-exon-sc0001347-1575043694:23183..23305 | TCONS_00035657-exon-sc0001347-1575043694:23183..23305 | Clytia hemisphaerica | exon |
| TCONS_00035657-exon-sc0001347-1491911889:23976..24026 | TCONS_00035657-exon-sc0001347-1491911889:23976..24026 | Clytia hemisphaerica | exon |
| TCONS_00035657-exon-sc0001347-1510915933:23976..24026 | TCONS_00035657-exon-sc0001347-1510915933:23976..24026 | Clytia hemisphaerica | exon |
| TCONS_00035657-exon-sc0001347-1575043694:23976..24026 | TCONS_00035657-exon-sc0001347-1575043694:23976..24026 | Clytia hemisphaerica | exon |
| TCONS_00035657-exon-sc0001347-1491911889:25587..25640 | TCONS_00035657-exon-sc0001347-1491911889:25587..25640 | Clytia hemisphaerica | exon |
| TCONS_00035657-exon-sc0001347-1510915933:25587..25640 | TCONS_00035657-exon-sc0001347-1510915933:25587..25640 | Clytia hemisphaerica | exon |
| TCONS_00035657-exon-sc0001347-1575043694:25587..25640 | TCONS_00035657-exon-sc0001347-1575043694:25587..25640 | Clytia hemisphaerica | exon |
| TCONS_00035657-exon-sc0001347-1491911889:25836..25854 | TCONS_00035657-exon-sc0001347-1491911889:25836..25854 | Clytia hemisphaerica | exon |
| TCONS_00035657-exon-sc0001347-1510915933:25836..25854 | TCONS_00035657-exon-sc0001347-1510915933:25836..25854 | Clytia hemisphaerica | exon |
| TCONS_00035657-exon-sc0001347-1575043694:25836..25854 | TCONS_00035657-exon-sc0001347-1575043694:25836..25854 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001347 | supercontig | sc0001347:23183..25854 + |
Blast
The following BLAST results are available for this feature:
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