TCONS_00035651 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035651
Unique NameTCONS_00035651
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length337

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035651 ID=TCONS_00035651|Name=TCONS_00035651|organism=Clytia hemisphaerica|type=transcript|length=337bp
aaagtTCCTGCTTGATTAATGGAGTCCTCTTCCTTTTCAGTTTGGATGAA
CCATCAGTTGAACCACCGGAACTCGAGATGCCgCCCCGATGTAGAAAGCT
GAAAAGAGCAAGCTCGAATCAAATAATCAGCAATGATGATACAATCACAT
CTTTTACATTGAAAGGAGCAATTATAATGACAGGTGACCATCACACCAAT
CTTAAAACGGATCCTGCCACACAAAAATACATGTTTACGGATGAGGAGGA
GTTGTTGGAAAACTTTCAGAGCTGGATGGTGAGGTCGTGCCACCTGAGCC
CTAAAAACGCTAAGGAATATCGGGCACATGTCAAANT
Run BLAST on NCBI

protein sequence of TCONS_00035651-protein

>TCONS_00035651-protein ID=TCONS_00035651-protein|Name=TCONS_00035651-protein|organism=Clytia hemisphaerica|type=polypeptide|length=111bp
SSCLINGVLFLFSLDEPSVEPPELEMPPRCRKLKRASSNQIISNDDTITS
FTLKGAIIMTGDHHTNLKTDPATQKYMFTDEEELLENFQSWMVRSCHLSP
KNAKEYRAHVK
Run BLAST on NCBI

transcript from alignment at sc0001346:22504..23205-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035651 ID=TCONS_00035651|Name=TCONS_00035651|organism=Clytia hemisphaerica|type=transcript|length=702bp|location=Sequence derived from alignment at sc0001346:22504..23205- (Clytia hemisphaerica)
AAAGTTCCTGCTTGATTAATGGAGTCCTCTTCCTTTTCAGTTTGGATGAA
CCATCAGTTGAACCACCGGAACTCGAGATGCCGTAAGTAACTACGTTCTA
AAAAGTCTGATCTTTAGGAAACTGCTGATTGCTTTGAATTAAAAAATGAT
ATGGTATATCTTTTTTCTACTTTCCTTTTTTATTGTTGTCCAATGTCCAA
AAGAAGATGTGGAGTAGGTCATACAAGATGAGTTCCTGAAACCTATACAA
CCCAGATTTTAGAAAAACATTTGAGTATAAATAGAAACTCTTTTTCTAAA
AAAAAGATGATGATAACTTTTTACTCTATATTATGCCATTACTTGATAGA
TTGATGGTATTTTATGATCTACAATGAGACTGGGAATCTGAAACTGAGCT
AACATACCTACATTCCAACATTTACAATATTCTTTTTTTCAAATCAGGCC
CCGATGTAGAAAGCTGAAAAGAGCAAGCTCGAATCAAATAATCAGCAATG
ATGATACAATCACATCTTTTACATTGAAAGGAGCAATTATAATGACAGGT
GACCATCACACCAATCTTAAAACGGATCCTGCCACACAAAAATACATGTT
TACGGATGAGGAGGAGTTGTTGGAAAACTTTCAGAGCTGGATGGTGAGGT
CGTGCCACCTGAGCCCTAAAAACGCTAAGGAATATCGGGCACATGTCAAA
NT

Coding sequence (CDS) from alignment at sc0001346:22504..23205-

>TCONS_00035651 ID=TCONS_00035651|Name=TCONS_00035651|organism=Clytia hemisphaerica|type=CDS|length=666bp|location=Sequence derived from alignment at sc0001346:22504..23205- (Clytia hemisphaerica)
GCCCCGATGTAGAAAGCTGAAAAGAGCAAGCTCGAATCAAATAATCAGCA
ATGATGATACAATCACATCTTTTACATTGAAAGGAGCAATTATAATGACA
GGTGACCATCACACCAATCTTAAAACGGATCCTGCCACACAAAAATACAT
GTTTACGGATGAGGAGGAGTTGTTGGAAAACTTTCAGAGCTGGATGGTGA
GGTCGTGCCACCTGAGCCCTAAAAACGCTAAGGAATATCGGGCACATGTC
AAAAGTTCCTGCTTGATTAATGGAGTCCTCTTCCTTTTCAGTTTGGATGA
ACCATCAGTTGAACCACCGGAACTCGAGATGCCGCCCCGATGTAGAAAGC
TGAAAAGAGCAAGCTCGAATCAAATAATCAGCAATGATGATACAATCACA
TCTTTTACATTGAAAGGAGCAATTATAATGACAGGTGACCATCACACCAA
TCTTAAAACGGATCCTGCCACACAAAAATACATGTTTACGGATGAGGAGG
AGTTGTTGGAAAACTTTCAGAGCTGGATGGTGAGGTCGTGCCACCTGAGC
CCTAAAAACGCTAAGGAATATCGGGCACATGTCAAAAGTTCCTGCTTGAT
TAATGGAGTCCTCTTCCTTTTCAGTTTGGATGAACCATCAGTTGAACCAC
CGGAACTCGAGATGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020885XLOC_020885Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035651-proteinTCONS_00035651-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035651-exon-sc0001346-1575043694:23124..23205TCONS_00035651-exon-sc0001346-1575043694:23124..23205Clytia hemisphaericaexon
TCONS_00035651-exon-sc0001346-1575043694:22504..22758TCONS_00035651-exon-sc0001346-1575043694:22504..22758Clytia hemisphaericaexon
TCONS_00035651-exon-sc0001346-1510915933:23124..23205TCONS_00035651-exon-sc0001346-1510915933:23124..23205Clytia hemisphaericaexon
TCONS_00035651-exon-sc0001346-1510915933:22504..22758TCONS_00035651-exon-sc0001346-1510915933:22504..22758Clytia hemisphaericaexon
TCONS_00035651-exon-sc0001346-1491911889:23124..23205TCONS_00035651-exon-sc0001346-1491911889:23124..23205Clytia hemisphaericaexon
TCONS_00035651-exon-sc0001346-1491911889:22504..22758TCONS_00035651-exon-sc0001346-1491911889:22504..22758Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001346supercontigsc0001346:22504..23205 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.277167	0.270281	0	0	14.5772	12.9959	10.3339	13.3441	4.20414	8.10056	6.45856	5.35315	2.21202	2.68007	0.944307	0.506693	1.66454	2.13263	0.294634	1.23325	1.87586	0.392135	0.317794	0.866763	1.48791	5.04611	1.90025	0	0.307633	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035651 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top