TCONS_00035649 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035649
Unique NameTCONS_00035649
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length223

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035649 ID=TCONS_00035649|Name=TCONS_00035649|organism=Clytia hemisphaerica|type=transcript|length=223bp
aggactaTGTCATGCGGGTGTTCGAACAAAAATGTGCTCAAGAGAATATC
CAATTTGTTAAACTAAAATACAGAATACGTCCGACTGCATGTACACGTGA
ACAAAGAAGGTCTGGATATCAAGGTGATCATTATGTGAATTGGTCAGGAT
ATGCTGACGATATTgaactttttcttgaaaatgttcaCGATCTTGAAAAA
GCCCTAAATATTCTCCATTCATT
Run BLAST on NCBI

transcript from alignment at sc0001343:16786..17008

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035649 ID=TCONS_00035649|Name=TCONS_00035649|organism=Clytia hemisphaerica|type=transcript|length=223bp|location=Sequence derived from alignment at sc0001343:16786..17008 (Clytia hemisphaerica)
AATGAATGGAGAATATTTAGGGCTTTTTCAAGATCGtgaacattttcaag
aaaaagttcAATATCGTCAGCATATCCTGACCAATTCACATAATGATCAC
CTTGATATCCAGACCTTCTTTGTTCACGTGTACATGCAGTCGGACGTATT
CTGTATTTTAGTTTAACAAATTGGATATTCTCTTGAGCACATTTTTGTTC
GAACACCCGCATGACAtagtcct
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020883XLOC_020883Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035649-exon-sc0001343-1491911889:16786..17008TCONS_00035649-exon-sc0001343-1491911889:16786..17008Clytia hemisphaericaexon
TCONS_00035649-exon-sc0001343-1510915933:16786..17008TCONS_00035649-exon-sc0001343-1510915933:16786..17008Clytia hemisphaericaexon
TCONS_00035649-exon-sc0001343-1575043694:16786..17008TCONS_00035649-exon-sc0001343-1575043694:16786..17008Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001343supercontigsc0001343:16786..17008 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	1.50363	0	2.45083	0.364877	3.69986	2.79815	3.96763	0	0.0924861	0	0	2.05099	0	0.956897	1.37222	6.88042	2.57208	0.867914	1.31303	4.16088	0	0	0.23575	0.974278	1.13106	0.994773	0.129663	0.401293	0.71751
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035649 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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