TCONS_00035648 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035648
Unique NameTCONS_00035648
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length432

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035648 ID=TCONS_00035648|Name=TCONS_00035648|organism=Clytia hemisphaerica|type=transcript|length=432bp
aaaaaagtagaatTGATTTTTGGCGGCTTGGTGGCCATATCTTTTTGATT
AGCTAATTGACCGCAAAAATAGCGTTATTGGTATATCATTGATTACTTTG
ATCACGATTGAAGGTTCGATTAGTACTGTCTGGAATCGACTACCCGCCAT
ACAATGTATGGTGATAGAATTCTGTGTACGGTGGTCAAAATAAGTTGACT
GGAGCCACCCTACACACCCACCACAATCCTGGACACCTCCGTACATTGCG
CTGTGGTGTCCGGTGGGTGTACGGTGGATTTAGTCTAAGCTATTTTGACC
ACGTACCTTTCAAACGTGTACATGGAAATTACCACCATGTATGGAGGTAG
CCAATTGGGTTGCTTGCTGTTTCTCCCCTATATACAATGGAATTTTGTAC
GGCGTTTTCAATCTTACCTAAAATACCACCGG
Run BLAST on NCBI

transcript from alignment at sc0001343:8440..8871

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035648 ID=TCONS_00035648|Name=TCONS_00035648|organism=Clytia hemisphaerica|type=transcript|length=432bp|location=Sequence derived from alignment at sc0001343:8440..8871 (Clytia hemisphaerica)
CCGGTGGTATTTTAGGTAAGATTGAAAACGCCGTACAAAATTCCATTGTA
TATAGGGGAGAAACAGCAAGCAACCCAATTGGCTACCTCCATACATGGTG
GTAATTTCCATGTACACGTTTGAAAGGTACGTGGTCAAAATAGCTTAGAC
TAAATCCACCGTACACCCACCGGACACCACAGCGCAATGTACGGAGGTGT
CCAGGATTGTGGTGGGTGTGTAGGGTGGCTCCAGTCAACTTATTTTGACC
ACCGTACACAGAATTCTATCACCATACATTGTATGGCGGGTAGTCGATTC
CAGACAGTACTAATCGAACCTTCAATCGTGATCAAAGTAATCAATGATAT
ACCAATAACGCTATTTTTGCGGTCAATTAGCTAATCAAAAAGATATGGCC
ACCAAGCCGCCAAAAATCAattctactttttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020882XLOC_020882Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035648-exon-sc0001343-1491911889:8440..8871TCONS_00035648-exon-sc0001343-1491911889:8440..8871Clytia hemisphaericaexon
TCONS_00035648-exon-sc0001343-1510915933:8440..8871TCONS_00035648-exon-sc0001343-1510915933:8440..8871Clytia hemisphaericaexon
TCONS_00035648-exon-sc0001343-1575043694:8440..8871TCONS_00035648-exon-sc0001343-1575043694:8440..8871Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001343supercontigsc0001343:8440..8871 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.159093	0.930845	0.180133	0	0	0	0	0.382974	1.8769	0.166061	0.322365	0.529775	1.05808	0.549412	0.361353	0.581681	0	0.122412	0	0.353943	0	0	0.182413	0	0	0.457335	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035648 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top