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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035643 ID=TCONS_00035643|Name=TCONS_00035643|organism=Clytia hemisphaerica|type=transcript|length=1859bp
TTTTTCAAGAAGCTTTATATTGTTGACTTTCTTGTTGTTAaaagcaagat
tttttaaatgtttaaaaatgtgtATAATATATTAAGGTGTATATGAAAAC
ATATCCTCAAAGTATTGTGTAAGTTGTGTACAGGGTTCTACAAATTTCTG
CTGTAGCTTAGTTGCTTTTTCAGACAGAGGATATATTTTCCCTTGGTATC
CATTTTTGTTTAACAAAATATATTTGTTGCTTATGAAACActtttatttg
taaaatatctgttaaaaaaaaacATATATAagttaaaacatgaaaaattt
taaatatcacGATCTTTAATAATTGGACCTTTCAAGTTGGACAGTCCaca
acaaacaatcaaaatatcaTTCAAATGTTCAACCAAGGAAAGAGGTACTT
CCTCAGCAATGATGCGAAATGTTTTAACACGTCTAATAACCTGTTCGACA
AGGATTCTCAGTTTTCCTACTTGGGTGGTAGTCTTAACTTCATTTGGGGT
CATTTGTGCTGAGCCTCTTCGTCCAGGAGGCACAAGGAAATGGATAAGCC
TAGCAACACACTCATCTTGGATATTAAAACCCTTGTCTGCCATTATACGT
GTGTGTGAAGGTACGGTATCAAGAAATCCTGTATCATTTGTGATAGCTTT
ATCAGATATTCGACCAGTGTAAGGCTCGGAGACAAATGTAATAAATGAGT
TAGGTGTAGTTGATATTAAAAATTTTACAGTGTTATGGTGTTTGTATTCC
GACCATGTGGCAGCTTGTAGTTCTAAGTCTTTCGGCgtttgaatgaaaat
ttcagagcAATCAATAATAGACACTACATCTGAGCAGGATGAAAACTTGG
AGGGAAGTGTTGCTCTAATAACCTCCTCATCAGGCATGTAGATCAGTGAA
TTTAGGCACAGTGCCATCGCACGTATCCAGCATGTAAATGTTCTGGAGGC
AGTTGATGTACTGATGCCAAACCTATCACccaaatcttcaaaatataGCC
CCAATTTCAGCTTCATCATCGTTAGAAGCATTTCATCAATGCCACTTAAA
ATTTTCTGACGACCagtttttgttgactttttgcttttcttgttgttgtt
ttggTTAGAACTGTACCTTTTCCTTGTGTATGGCCAGATGACCTTGAAGA
GGGCCTCGAATAGTGCTCTGCTTGAAATATTAGTATAGAAATTGCacttt
ttatcagatttaataagttttttataaaatgtCCCTTGAAAAGATCTACC
GAGGTAATTCTTTACATTGTAATTTTTAGGTTGATCAGACTGGTGTTGCT
CAGGTGTGGAAGTCATGCTATGAGTTGATGACAAGAACGTAGATGTTGAA
GGTCCAGCATCTTCAACAAGACTGTTAGACTCAAGGTTTTGTTTTGGTGA
AAGTTGACGTGGTGGTGACGACAAATCAGCATCCTCATCATCAGgcgaaa
taaaaacatcaaaatcaacaGCAGTTGCATCAGCATCAGCATCATGACAT
TCAGAATTTGATGTAGTAGCAGGTTGGTCAATAGGTTGTTGTGAGCAATT
CGCTGTTGTTTTCTCGTCGTCAGCTTTTCCCTTTACAAGGTTTTGTTTTG
GtgaaagttttgataaaaaagtcatcaattgAGTTTGTTGTTTACTGTTG
TTGGTTTTTGGAGTTTTCAATTCAGGATCAGGTTGATGTTTTTCTGATAA
ATCAAgagatgattttcttctttttgtacaAGTGGGTAGTAGAGATGATG
AAGATGATGGCAGAGACTCACTGTTAAATCTTTTGCTCCTCTTTTCAAAG
TCATAGCCCATGTTCTTCGTTGGATAAGGATGCTGCTCTGTGGGCCTTCC
ATCAACAAA Run BLAST on NCBI transcript from alignment at sc0001343:28160..30136+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035643 ID=TCONS_00035643|Name=TCONS_00035643|organism=Clytia hemisphaerica|type=transcript|length=1977bp|location=Sequence derived from alignment at sc0001343:28160..30136+ (Clytia hemisphaerica)
TTTTTCAAGAAGCTTTATATTGTTGACTTTCTTGTTGTTAaaagcaagat
tttttaaatgtttaaaaatgtgtATAATATATTAAGGTGTATATGAAAAC
ATATCCTCAAAGTATTGTGTAAGTTGTGTACAGGGTTCTACAAATTTCTG
CTGTAGCTTAGTTGCTTTTTCAGACAGAGGATATATTTTCCCTTGGTATC
CATTTTTGTTTAACAAAATATATTTGTTGCTTATGAAACActtttatttg
taaaatatctgttaaaaaaaaacatatataagttaaaaacatgaaaaaaa
aattaaatatcacGATCTTTAATAATTGGACCTTTCAAGTTGGACAGTCC
acaacaaacaatcaaaatatcaTTCAAATGTTCAACCAANCATATATAag
ttaaaacatgaaaaattttaaatatcacGATCTTTAATAATTGGACCTTT
CAAGTTGGACAGTCCacaacaaacaatcaaaatatcaTTCAAATGTTCAA
CCAAGGAAAGAGGTACTTCCTCAGCAATGATGCGAAATGTTTTAACACGT
CTAATAACCTGTTCGACAAGGATTCTCAGTTTTCCTACTTGGGTGGTAGT
CTTAACTTCATTTGGGGTCATTTGTGCTGAGCCTCTTCGTCCAGGAGGCA
CAAGGAAATGGATAAGCCTAGCAACACACTCATCTTGGATATTAAAACCC
TTGTCTGCCATTATACGTGTGTGTGAAGGTACGGTATCAAGAAATCCTGT
ATCATTTGTGATAGCTTTATCAGATATTCGACCAGTGTAAGGCTCGGAGA
CAAATGTAATAAATGAGTTAGGTGTAGTTGATATTAAAAATTTTACAGTG
TTATGGTGTTTGTATTCCGACCATGTGGCAGCTTGTAGTTCTAAGTCTTT
CGGCgtttgaatgaaaatttcagagcAATCAATAATAGACACTACATCTG
AGCAGGATGAAAACTTGGAGGGAAGTGTTGCTCTAATAACCTCCTCATCA
GGCATGTAGATCAGTGAATTTAGGCACAGTGCCATCGCACGTATCCAGCA
TGTAAATGTTCTGGAGGCAGTTGATGTACTGATGCCAAACCTATCACcca
aatcttcaaaatataGCCCCAATTTCAGCTTCATCATCGTTAGAAGCATT
TCATCAATGCCACTTAAAATTTTCTGACGACCagtttttgttgacttttt
gcttttcttgttgttgttttggTTAGAACTGTACCTTTTCCTTGTGTATG
GCCAGATGACCTTGAAGAGGGCCTCGAATAGTGCTCTGCTTGAAATATTA
GTATAGAAATTGCactttttatcagatttaataagttttttataaaatgt
CCCTTGAAAAGATCTACCGAGGTAATTCTTTACATTGTAATTTTTAGGTT
GATCAGACTGGTGTTGCTCAGGTGTGGAAGTCATGCTATGAGTTGATGAC
AAGAACGTAGATGTTGAAGGTCCAGCATCTTCAACAAGACTGTTAGACTC
AAGGTTTTGTTTTGGTGAAAGTTGACGTGGTGGTGACGACAAATCAGCAT
CCTCATCATCAGgcgaaataaaaacatcaaaatcaacaGCAGTTGCATCA
GCATCAGCATCATGACATTCAGAATTTGATGTAGTAGCAGGTTGGTCAAT
AGGTTGTTGTGAGCAATTCGCTGTTGTTTTCTCGTCGTCAGCTTTTCCCT
TTACAAGGTTTTGTTTTGGtgaaagttttgataaaaaagtcatcaattgA
GTTTGTTGTTTACTGTTGTTGGTTTTTGGAGTTTTCAATTCAGGATCAGG
TTGATGTTTTTCTGATAAATCAAgagatgattttcttctttttgtacaAG
TGGGTAGTAGAGATGATGAAGATGATGGCAGAGACTCACTGTTAAATCTT
TTGCTCCTCTTTTCAAAGTCATAGCCCATGTTCTTCGTTGGATAAGGATG
CTGCTCTGTGGGCCTTCCATCAACAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035643-exon-sc0001343-1491911889:28160..28432 | TCONS_00035643-exon-sc0001343-1491911889:28160..28432 | Clytia hemisphaerica | exon |
| TCONS_00035643-exon-sc0001343-1510915933:28160..28432 | TCONS_00035643-exon-sc0001343-1510915933:28160..28432 | Clytia hemisphaerica | exon |
| TCONS_00035643-exon-sc0001343-1575043694:28160..28432 | TCONS_00035643-exon-sc0001343-1575043694:28160..28432 | Clytia hemisphaerica | exon |
| TCONS_00035643-exon-sc0001343-1491911889:28551..30136 | TCONS_00035643-exon-sc0001343-1491911889:28551..30136 | Clytia hemisphaerica | exon |
| TCONS_00035643-exon-sc0001343-1510915933:28551..30136 | TCONS_00035643-exon-sc0001343-1510915933:28551..30136 | Clytia hemisphaerica | exon |
| TCONS_00035643-exon-sc0001343-1575043694:28551..30136 | TCONS_00035643-exon-sc0001343-1575043694:28551..30136 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001343 | supercontig | sc0001343:28160..30136 + |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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