TCONS_00035642 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035642
Unique NameTCONS_00035642
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length780

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035642 ID=TCONS_00035642|Name=TCONS_00035642|organism=Clytia hemisphaerica|type=transcript|length=780bp
AGCCAGTCCCGGCACGGGTCTTTTGTGTTACAAAAGTTAATTgtctttaa
ataaataaataaaaatgaaaatattttttaaatattacacCTCACAACCT
CACTCACGGAAAGACGACAAGACTTCGTTTAGCTTTTGATCTTTCAGTGC
TACTTGGTCTGGGGTAAATGTGCGACTCGCACGTTCACCTCTCAGACAAG
CAACAACTGATCGGATCAATATGAAGGAAATCTTGCGTCGAATCCCGGCA
ATCACGACACTCTTCATGCAATTTTGCTTCTCTGAGATTTTCTCAGAAAG
TCTATTTAGAAATATCGAACATTCACTGGAAGTTCCACCAGTAGCACCAA
AAATCAATGGTGTGAAAGTCCCTCTCTCAATTTCCTGGATTCGTTGGTTA
TAAGCTCTTTTCTTCTGCTTCTCAAAGCTTGCTAATGTAATTAAAACAGA
TTTTTCACGATAACTCGGAGCTAGAAGTTTTGAAACCTTAACATCAAAGA
ATGCTCTCTGAAACCGTGTCCAAAAACCGTTACCACTAACATCGGCCCTT
GCCTCATTACCACAAATATCTGATTTCTTAAAATCAGCACTATCAGTTCT
TGTGAGTTCCAATAATGTGGGTTCAATTTTCACATCATGTGCAACTTCTT
TCAACATCATCGCCAACGCATCACGGATGTTGTTGTGACGATGAATGACG
TAACGACCGAGGTGACAAGAAAGTGCATGTTCGATGGAGAAGGATGCTTG
ACATGCACATTTGACTGGTAGTCTCCTCAT
Run BLAST on NCBI

protein sequence of TCONS_00035642-protein

>TCONS_00035642-protein ID=TCONS_00035642-protein|Name=TCONS_00035642-protein|organism=Clytia hemisphaerica|type=polypeptide|length=226bp
MRRLPVKCACQASFSIEHALSCHLGRYVIHRHNNIRDALAMMLKEVAHDV
KIEPTLLELTRTDSADFKKSDICGNEARADVSGNGFWTRFQRAFFDVKVS
KLLAPSYREKSVLITLASFEKQKKRAYNQRIQEIERGTFTPLIFGATGGT
SSECSIFLNRLSEKISEKQNCMKSVVIAGIRRKISFILIRSVVACLRGER
ASRTFTPDQVALKDQKLNEVLSSFRE
Run BLAST on NCBI

transcript from alignment at sc0001342:47166..47945

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035642 ID=TCONS_00035642|Name=TCONS_00035642|organism=Clytia hemisphaerica|type=transcript|length=780bp|location=Sequence derived from alignment at sc0001342:47166..47945 (Clytia hemisphaerica)
ATGAGGAGACTACCAGTCAAATGTGCATGTCAAGCATCCTTCTCCATCGA
ACATGCACTTTCTTGTCACCTCGGTCGTTACGTCATTCATCGTCACAACA
ACATCCGTGATGCGTTGGCGATGATGTTGAAAGAAGTTGCACATGATGTG
AAAATTGAACCCACATTATTGGAACTCACAAGAACTGATAGTGCTGATTT
TAAGAAATCAGATATTTGTGGTAATGAGGCAAGGGCCGATGTTAGTGGTA
ACGGTTTTTGGACACGGTTTCAGAGAGCATTCTTTGATGTTAAGGTTTCA
AAACTTCTAGCTCCGAGTTATCGTGAAAAATCTGTTTTAATTACATTAGC
AAGCTTTGAGAAGCAGAAGAAAAGAGCTTATAACCAACGAATCCAGGAAA
TTGAGAGAGGGACTTTCACACCATTGATTTTTGGTGCTACTGGTGGAACT
TCCAGTGAATGTTCGATATTTCTAAATAGACTTTCTGAGAAAATCTCAGA
GAAGCAAAATTGCATGAAGAGTGTCGTGATTGCCGGGATTCGACGCAAGA
TTTCCTTCATATTGATCCGATCAGTTGTTGCTTGTCTGAGAGGTGAACGT
GCGAGTCGCACATTTACCCCAGACCAAGTAGCACTGAAAGATCAAAAGCT
AAACGAAGTCTTGTCGTCTTTCCGTGAGTGAGGTTGTGAGgtgtaatatt
taaaaaatattttcatttttatttatttatttaaagacAATTAACTTTTG
TAACACAAAAGACCCGTGCCGGGACTGGCT

Coding sequence (CDS) from alignment at sc0001342:47166..47945

>TCONS_00035642 ID=TCONS_00035642|Name=TCONS_00035642|organism=Clytia hemisphaerica|type=CDS|length=681bp|location=Sequence derived from alignment at sc0001342:47166..47945 (Clytia hemisphaerica)
ATGAGGAGACTACCAGTCAAATGTGCATGTCAAGCATCCTTCTCCATCGA
ACATGCACTTTCTTGTCACCTCGGTCGTTACGTCATTCATCGTCACAACA
ACATCCGTGATGCGTTGGCGATGATGTTGAAAGAAGTTGCACATGATGTG
AAAATTGAACCCACATTATTGGAACTCACAAGAACTGATAGTGCTGATTT
TAAGAAATCAGATATTTGTGGTAATGAGGCAAGGGCCGATGTTAGTGGTA
ACGGTTTTTGGACACGGTTTCAGAGAGCATTCTTTGATGTTAAGGTTTCA
AAACTTCTAGCTCCGAGTTATCGTGAAAAATCTGTTTTAATTACATTAGC
AAGCTTTGAGAAGCAGAAGAAAAGAGCTTATAACCAACGAATCCAGGAAA
TTGAGAGAGGGACTTTCACACCATTGATTTTTGGTGCTACTGGTGGAACT
TCCAGTGAATGTTCGATATTTCTAAATAGACTTTCTGAGAAAATCTCAGA
GAAGCAAAATTGCATGAAGAGTGTCGTGATTGCCGGGATTCGACGCAAGA
TTTCCTTCATATTGATCCGATCAGTTGTTGCTTGTCTGAGAGGTGAACGT
GCGAGTCGCACATTTACCCCAGACCAAGTAGCACTGAAAGATCAAAAGCT
AAACGAAGTCTTGTCGTCTTTCCGTGAGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020878XLOC_020878Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035642-exon-sc0001342-1491911889:47166..47945TCONS_00035642-exon-sc0001342-1491911889:47166..47945Clytia hemisphaericaexon
TCONS_00035642-exon-sc0001342-1510915933:47166..47945TCONS_00035642-exon-sc0001342-1510915933:47166..47945Clytia hemisphaericaexon
TCONS_00035642-exon-sc0001342-1575043694:47166..47945TCONS_00035642-exon-sc0001342-1575043694:47166..47945Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035642-proteinTCONS_00035642-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001342supercontigsc0001342:47166..47945 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.232968	0.664119	0.323736	0.790256	0.258223	0.399407	0.681912	0.441868	0.972807	0.689823	0.370777	0.542563	0.325103	0.200251	0.334505	0.114326	0.406228	0.422699	0.391016	0.512772	0.349639	0.374128	0.098938	1.30459	0.695855	0.621064	0.327555	0.64183	0.360951
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035642 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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