TCONS_00035636 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035636
Unique NameTCONS_00035636
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length440

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035636 ID=TCONS_00035636|Name=TCONS_00035636|organism=Clytia hemisphaerica|type=transcript|length=440bp
CGAAATCTGaaattgtttataaaaaaattgtaacaatCTAGACTTATTGA
GGTGCGCacaacttaatttttttcttacattcaGGACACAATAAGGCAGT
GCGCGACATTTGTTTCAGTAATGACGGCACCAAGTTTTTGAGTTGTGGAT
ACGACAGATGGATCAAACTCTGGGATACTGAAACTGGTGAATGTCTTGGA
CGATATTCCAATAAGAAAATCCCTTATTGTGTAAAGTTCAACCCTGACGA
GgaTAAACAACATCTATTTATCGCTGGAATGTCCGACAAGAAAATGATAA
CGtgggACACAAGGGAAAACGAAATTGTGCAAGAATACGACAGGCATTTA
GGTGCAGTAAATACCATCACATTTTTCGATCGAAATCAACGTATCGCCAC
CACATCTGATGATAAGAGTATCCGTATATGGGAGTGGTAT
Run BLAST on NCBI

transcript from alignment at sc0001342:8404..10302-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035636 ID=TCONS_00035636|Name=TCONS_00035636|organism=Clytia hemisphaerica|type=transcript|length=1899bp|location=Sequence derived from alignment at sc0001342:8404..10302- (Clytia hemisphaerica)
CGAAATCTGAAATTGTTTATAAAAAAATTGTAACAATCTAGACTTATTGA
GGTGCGCACAACTTAATTTTTTTCTTACATTCAGGACACAATAAGGCAGT
GCGCGACATTTGTTTCAGTAATGACGGCACCAAGTTTTTGAGTTGTGGAT
ACGACAGATGGATCAAACTCTGGGATACTGAAACTGGTACGATGAAGGAG
ATATTCTTAATTTCTTGGCTGGTATATCTAACTCTCTGAAAATCGAATTA
CATTTTGAGCTCATAAACAAGTTTTACTAATTTTTGAATTAAGATATTAT
TTATCACCTCCTAGTCCTTATATCTAGAACATATTTTCTGATTAGTTTTC
TTCAAGGGTATCTTTGACACAATGACGTAAATTTTAAAGCAATATTGCAC
TGACTGACTGTCTTTTTTTGAATCAATTTATCCTGTTATCTGAATACTTT
TATTTCAAAGTAAAACCTTTTTGAAATGGTTTGATTCTATAGGTGAATGT
CTTGGACGATATTCCAATAAGAAAATCCCTTATTGTGTAAAGTTCAACCC
TGACGAGGTAAGTTTTGCTGTTTTCGTTGTTCTTTTGATTATTTTCTATG
ATAGGCGTGTTTTCTTATTATCTGGTTTGTTGTTCTGTCCCTTTTTGGGG
ATTTTTGCCGTTTACTTTGCCATCATATTTGACACCTAACAGTCTTTCAT
CCCTCTAGAATGGAGTCGTTTATTATCCATATTTTCTATGTCTGAATTAT
TCAATATTATCATTCTTCCAAACGTTTGGTAGCATTACTATGTTTGGGAT
TTAGTTTCGGGTTATTTACTTTCTTTTTGTTATTTTTTTTATAGGATAAA
CAACATCTATTTATCGCTGGAATGTCCGACAAGAAAATGATAACGGTATA
TTTTAATGATATATAAAAATTGACCAAAGCAAGCCTTCTTGTTCTTTTAA
AAGTAATGGACCTGACTTGTATGAAATTTGAACTACATGCTTTATTGTTA
CAAGTCTTTACTCTTTTTATTTTTAGTGGGACACAAGGGAAAACGAAATT
GTGCAAGAATACGACAGGTTTGTCATTTCCTGTGTTGTAGATAACTTGGA
TAGTTTCGTTGCTTGAATTTACTCACTGTTCGATTTTGTTTTCTCAAACT
AGTCTAACATGTTTTAGATTTGGTCCCGAGGCTAAAGATTTATTTTTTAA
TCTCATTTCGAAATTTGACCGAGGGTAATTTATCCAGAATTTCACGAAAA
CAAGCATGGGATTCCTGGTTAATCTCATGGTTTAGATCGAAATTCTAACA
ATTCTGAAAGACGTCAATTTAACACTGGAAATCAATCTGAAAATTTAAAA
AGAGGTCTCAAAAACGTCATAGAAACGCGAATCGAGTTTTAATTGGATAG
TATTCCATTTACTTAAGCCTTTGAAGTTAGTAAGAAAGTCGGTGATGAAT
TTCCAAACGATGAAAATTTCACTTTTGCGGGAAATTACAAAAACTAGGAG
GGAAATTACAGGTTCGCGGGAAATTACAAATTAACGTAAGCAAAAACGTC
AATCGAATTTCAATCAACCATGAGATTAGTACTAGATATTCTGGATAAAT
TACCCTCGGTCAAATTTTGAAATGTTTTAAATTTCCCTCGTTGCACTTGA
GAAATTTCAAAAAATTTCAAAATTGACCTCGGGAAATTTATCCCAAATTC
CCTCATAACCATGAGATTACTTGTACAAATGTATTCGATTGGTATTTCCT
GTATAGGTTCGCGACTGTCAACATTTAAATCTTTTTGTTTTCTTTTCAAC
AGGCATTTAGGTGCAGTAAATACCATCACATTTTTCGATCGAAATCAACG
TATCGCCACCACATCTGATGATAAGAGTATCCGTATATGGGAGTGGTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020872XLOC_020872Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035636-exon-sc0001342-1575043694:10117..10302TCONS_00035636-exon-sc0001342-1575043694:10117..10302Clytia hemisphaericaexon
TCONS_00035636-exon-sc0001342-1575043694:9746..9810TCONS_00035636-exon-sc0001342-1575043694:9746..9810Clytia hemisphaericaexon
TCONS_00035636-exon-sc0001342-1575043694:9408..9458TCONS_00035636-exon-sc0001342-1575043694:9408..9458Clytia hemisphaericaexon
TCONS_00035636-exon-sc0001342-1575043694:9236..9276TCONS_00035636-exon-sc0001342-1575043694:9236..9276Clytia hemisphaericaexon
TCONS_00035636-exon-sc0001342-1575043694:8404..8500TCONS_00035636-exon-sc0001342-1575043694:8404..8500Clytia hemisphaericaexon
TCONS_00035636-exon-sc0001342-1510915933:10117..10302TCONS_00035636-exon-sc0001342-1510915933:10117..10302Clytia hemisphaericaexon
TCONS_00035636-exon-sc0001342-1510915933:9746..9810TCONS_00035636-exon-sc0001342-1510915933:9746..9810Clytia hemisphaericaexon
TCONS_00035636-exon-sc0001342-1510915933:9408..9458TCONS_00035636-exon-sc0001342-1510915933:9408..9458Clytia hemisphaericaexon
TCONS_00035636-exon-sc0001342-1510915933:9236..9276TCONS_00035636-exon-sc0001342-1510915933:9236..9276Clytia hemisphaericaexon
TCONS_00035636-exon-sc0001342-1510915933:8404..8500TCONS_00035636-exon-sc0001342-1510915933:8404..8500Clytia hemisphaericaexon
TCONS_00035636-exon-sc0001342-1491911889:10117..10302TCONS_00035636-exon-sc0001342-1491911889:10117..10302Clytia hemisphaericaexon
TCONS_00035636-exon-sc0001342-1491911889:9746..9810TCONS_00035636-exon-sc0001342-1491911889:9746..9810Clytia hemisphaericaexon
TCONS_00035636-exon-sc0001342-1491911889:9408..9458TCONS_00035636-exon-sc0001342-1491911889:9408..9458Clytia hemisphaericaexon
TCONS_00035636-exon-sc0001342-1491911889:9236..9276TCONS_00035636-exon-sc0001342-1491911889:9236..9276Clytia hemisphaericaexon
TCONS_00035636-exon-sc0001342-1491911889:8404..8500TCONS_00035636-exon-sc0001342-1491911889:8404..8500Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001342supercontigsc0001342:8404..10302 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.30967	10.8054	12.789	12.5153	78.648	73.5339	45.3812	68.2486	42.3156	45.6656	26.76	32.5466	24.7459	27.8319	5.74028	6.31409	12.6214	8.07443	6.6094	4.79873	11.2943	8.39509	12.0714	12.9569	26.6085	51.9625	6.8397	4.40826	12.3925	10.5212
Blast
[Close]
BLAST of TCONS_00035636 vs. Swiss-Prot (Human)
Match: PRP17 (Pre-mRNA-processing factor 17 OS=Homo sapiens GN=CDC40 PE=1 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 2.828e-61
Identity = 85/118 (72.03%), Postives = 104/118 (88.14%), Query Frame = 3 
Query:   84 GHNKAVRDICFSNDGTKFLSCGYDRWIKLWDTETGECLGRYSNKKIPYCVKFNPDEDKQHLFIAGMSDKKMITWDTRENEIVQEYDRHLGAVNTITFFDRNQRIATTSDDKSIRIWEW 437
            GH+KAVRDICF+  GT+FLS  YDR++KLWDTETG+C+ R++N+K+PYCVKFNPDEDKQ+LF+AGMSDKK++ WD R  EIVQEYDRHLGAVNTI F D N+R  +TSDDKS+R+WEW
Sbjct:  330 GHSKAVRDICFNTAGTQFLSAAYDRYLKLWDTETGQCISRFTNRKVPYCVKFNPDEDKQNLFVAGMSDKKIVQWDIRSGEIVQEYDRHLGAVNTIVFVDENRRFVSTSDDKSLRVWEW 447
The following BLAST results are available for this feature:
BLAST of TCONS_00035636 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PRP172.828e-6172.03Pre-mRNA-processing factor 17 OS=Homo sapiens GN=C... [more]
back to top