TCONS_00035632 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035632
Unique NameTCONS_00035632
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length647

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035632 ID=TCONS_00035632|Name=TCONS_00035632|organism=Clytia hemisphaerica|type=transcript|length=647bp
GTTCCGAGTTGATCGCCTGCGTCACCGGAAAAGCCAGATACTGTGAGTTT
GTATTTAGAAGCTTCGTTGCCAACACTGAAACTGGTGTATCTTGCTTCCT
TGGTAAATCCAGCATAATCTGTCATCTCGATCCATAATTCATTGACACCG
TTCGCAGTCAAAAGATGGATGTTTTCGTTACCAAGCCAAAGTTCATTTTG
TAGATTCCCGAACCCACTCTTGTATGAAGCCCAATTACGGAAGAAGTTGG
TGGATCCATCGACACGCCTTTGAATGACCGCCCAGCCGCCCCGTTTCCAT
GACGATGAAGGATGTGTTGCGTTCATGTCACAATATACATCCATTAGGTT
ACCACCAGGTGCGATTCTGTAGATTCCACTGAAAGTATTACCAGCGTTGA
ATAGAGCATTGCAATCAGATTTGAGTTGACAGCTTCGACATTCACAATAA
TAACCATCTTGGATGTGAGCATCATCAGAGCAGCTACATTTATCACCACA
GATATTGGACGGTAAGGAAGAACAGTATCCCTCTCTTTTGGAAACAGCTC
CTTTATTGCAAACACCAGGACATCCCAAAGATGATACCATTGATACCAAG
AGTAGGCATGATGTCAACTTTAAAATATTCATCATTTTGTTTTCAAC
Run BLAST on NCBI

protein sequence of TCONS_00035632-protein

>TCONS_00035632-protein ID=TCONS_00035632-protein|Name=TCONS_00035632-protein|organism=Clytia hemisphaerica|type=polypeptide|length=215bp
VENKMMNILKLTSCLLLVSMVSSLGCPGVCNKGAVSKREGYCSSLPSNIC
GDKCSCSDDAHIQDGYYCECRSCQLKSDCNALFNAGNTFSGIYRIAPGGN
LMDVYCDMNATHPSSSWKRGGWAVIQRRVDGSTNFFRNWASYKSGFGNLQ
NELWLGNENIHLLTANGVNELWIEMTDYAGFTKEARYTSFSVGNEASKYK
LTVSGFSGDAGDQLG
Run BLAST on NCBI

transcript from alignment at sc0001341:63883..64529

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035632 ID=TCONS_00035632|Name=TCONS_00035632|organism=Clytia hemisphaerica|type=transcript|length=647bp|location=Sequence derived from alignment at sc0001341:63883..64529 (Clytia hemisphaerica)
GTTGAAAACAAAATGATGAATATTTTAAAGTTGACATCATGCCTACTCTT
GGTATCAATGGTATCATCTTTGGGATGTCCTGGTGTTTGCAATAAAGGAG
CTGTTTCCAAAAGAGAGGGATACTGTTCTTCCTTACCGTCCAATATCTGT
GGTGATAAATGTAGCTGCTCTGATGATGCTCACATCCAAGATGGTTATTA
TTGTGAATGTCGAAGCTGTCAACTCAAATCTGATTGCAATGCTCTATTCA
ACGCTGGTAATACTTTCAGTGGAATCTACAGAATCGCACCTGGTGGTAAC
CTAATGGATGTATATTGTGACATGAACGCAACACATCCTTCATCGTCATG
GAAACGGGGCGGCTGGGCGGTCATTCAAAGGCGTGTCGATGGATCCACCA
ACTTCTTCCGTAATTGGGCTTCATACAAGAGTGGGTTCGGGAATCTACAA
AATGAACTTTGGCTTGGTAACGAAAACATCCATCTTTTGACTGCGAACGG
TGTCAATGAATTATGGATCGAGATGACAGATTATGCTGGATTTACCAAGG
AAGCAAGATACACCAGTTTCAGTGTTGGCAACGAAGCTTCTAAATACAAA
CTCACAGTATCTGGCTTTTCCGGTGACGCAGGCGATCAACTCGGAAC

Coding sequence (CDS) from alignment at sc0001341:63883..64529

>TCONS_00035632 ID=TCONS_00035632|Name=TCONS_00035632|organism=Clytia hemisphaerica|type=CDS|length=645bp|location=Sequence derived from alignment at sc0001341:63883..64529 (Clytia hemisphaerica)
GTTGAAAACAAAATGATGAATATTTTAAAGTTGACATCATGCCTACTCTT
GGTATCAATGGTATCATCTTTGGGATGTCCTGGTGTTTGCAATAAAGGAG
CTGTTTCCAAAAGAGAGGGATACTGTTCTTCCTTACCGTCCAATATCTGT
GGTGATAAATGTAGCTGCTCTGATGATGCTCACATCCAAGATGGTTATTA
TTGTGAATGTCGAAGCTGTCAACTCAAATCTGATTGCAATGCTCTATTCA
ACGCTGGTAATACTTTCAGTGGAATCTACAGAATCGCACCTGGTGGTAAC
CTAATGGATGTATATTGTGACATGAACGCAACACATCCTTCATCGTCATG
GAAACGGGGCGGCTGGGCGGTCATTCAAAGGCGTGTCGATGGATCCACCA
ACTTCTTCCGTAATTGGGCTTCATACAAGAGTGGGTTCGGGAATCTACAA
AATGAACTTTGGCTTGGTAACGAAAACATCCATCTTTTGACTGCGAACGG
TGTCAATGAATTATGGATCGAGATGACAGATTATGCTGGATTTACCAAGG
AAGCAAGATACACCAGTTTCAGTGTTGGCAACGAAGCTTCTAAATACAAA
CTCACAGTATCTGGCTTTTCCGGTGACGCAGGCGATCAACTCGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020869XLOC_020869Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035632-exon-sc0001341-1491911889:63883..64529TCONS_00035632-exon-sc0001341-1491911889:63883..64529Clytia hemisphaericaexon
TCONS_00035632-exon-sc0001341-1510915933:63883..64529TCONS_00035632-exon-sc0001341-1510915933:63883..64529Clytia hemisphaericaexon
TCONS_00035632-exon-sc0001341-1575043694:63883..64529TCONS_00035632-exon-sc0001341-1575043694:63883..64529Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035632-proteinTCONS_00035632-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001341supercontigsc0001341:63883..64529 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.161999	0	0.366847	0.628079	0.546161	0.863168	1.24965	2.14483	9.96547	27.1395	11.1606	16.3993	214.726	212.478	41.4867	101.482	33.2609	37.5191	9.04094	111.816	1.09641	1.37517	1.6717	1.35095	1.39145	1.39706	4.55372	5.21545	4.67496	4.57985
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002181Fibrinogen_a/b/g_C_dom
IPR014716Fibrinogen_a/b/g_C_1
Blast
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BLAST of TCONS_00035632 vs. Swiss-Prot (Human)
Match: FCN3 (Ficolin-3 OS=Homo sapiens GN=FCN3 PE=1 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 8.869e-32
Identity = 62/139 (44.60%), Postives = 84/139 (60.43%), Query Frame = -1 
Query:    6 DCNALFNAGNTFSGIYRI-APGGNLMDVYCDMNATHPSSSWKRGGWAVIQRRVDGSTNFFRNWASYKSGFGNLQNELWLGNENIHLLTANGVNELWIEMTDYAGFTKEARYTSFSVGNEASKYKLTVSGFS-GDAGDQL 416
            +C  L + G T SG Y +  P G  + V+CDM+        + GGW V QRR DGS +FFR+W+SY++GFGN ++E WLGNEN+H LT  G  EL +E+ D+ G    A Y +F +  E   Y+L +  FS G AGD L
Sbjct:   92 NCRELLSQGATLSGWYHLCLPEGRALPVFCDMDT-------EGGGWLVFQRRQDGSVDFFRSWSSYRAGFGNQESEFWLGNENLHQLTLQGNWELRVELEDFNGNRTFAHYATFRLLGEVDHYQLALGKFSEGTAGDSL 223
The following BLAST results are available for this feature:
BLAST of TCONS_00035632 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FCN38.869e-3244.60Ficolin-3 OS=Homo sapiens GN=FCN3 PE=1 SV=2[more]
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