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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035627 ID=TCONS_00035627|Name=TCONS_00035627|organism=Clytia hemisphaerica|type=transcript|length=1672bp
AGAGCGTTCCCTGAGAATATTCATAGGAACCCTTGTAAATTCTCGTTTCA
CtagtaaaattacaaaattttaaataaaaagataaaaatactGGAAAATA
TCACGACGACAGTTTTTTCTACTATTTTCCATTTTGTTCTTAGGGGAAAA
CTAAAAGAAAACCCGTGAAAATATAAATTAGGGGTTTCCCTAATAATTTA
TGTCTTTTTCGAGTAACTAAAACCAGCGAGTTCCTTTGGCGAGTGAGAAG
AACAATACTTCACTCGCCGCTCGCTGACCTTCAATAGGGTAACAACAATG
GCGTCTGGCAAAGGTAAACAAAGTCTTGAACCTATATCAACTACAAGCAT
TGAGGACAGTGACACAGATAGTGATGCAGGTGCTAACCTTCGTTCACCTA
AAGATAAAGCCAGAAGGGAGAAAATAATCGATAATTGGAAGCATATTGCA
CACAAAACCAAACCTCTTACATCAGTCATGTCAATGTATACATCGACCTT
TCAAAGTACACTGGATCATTTTTCATCATCAAATGATgcatttgattcaa
attttgaatttgccCATGCACAAGATCAAActacactttttaattttcct
caaaaaccAATTGAGAAGCAGGCTTTACTGCAAGAAGAAGTAGAGATAGA
GCAAAGAGCAAACCGTAAGCGGAAAGAAACAGTTGCTGATACTCAAAGTT
TTGATGGAGATTCTAAACATCGATGTACTGAAGACCTTAATTTTGACTTG
GCAAGGAAGTTAACACCTTGCTTTCAAAGGATTAATGTAGGGGAGCAAGG
TGCTGCTGGGGTTCCTGTTGACGAGTTAAATCAAGCTGCTCAGCTGTTAT
GTGAAGCTTTGTATATCAGGGCAAAGTATATGGCTTTGAGTCTTCAAAGT
TTCAATTCTACAACTGCGTCGTCTTTGGAAAATGTCAATGATGAGTATAA
GTTGGATAAAATGTACAATAAATTGGCTGAGGATGCTGTAACAACTCCAA
GACCTACTTGTGTATTGGAACAAGGAAATCCCAACCTGAATTGTGATGGA
AGTGTTTGGAAACCATTTGAGTGTGATATCCCAGGAGATATTGGATACAA
TGTTGAACTTGTCGATGgtgtttttcaagttttgagTTGCAAAAAACCGG
TTGATGGAGACTCACCAAACAAGAAGAGCACATTGCATCCTTATCCCTGC
ATTGAAGAATTCATGgaagatcaaaagtttctactaGCACTTTCAACTCA
TGGGCCTGTgaaaTCATTCACATTTCGCCGACTTCAGTATCTCCATTCAA
AGTTCAAATTACATTGTTTATTGAATGAGATGAAAGAGCTTGCCTCCCAA
AAGGAAATACCTCATCGTGATTTCTACAACGTCAGAAAAGTGGACACTCA
CATTCATGCTTCATCAGCTATGAACCAAAAACATTTGCTTCGTTTCatca
aaaagaaagtaaaaaaacatGGGGATGATGTTGTAGAAATGAAAGATGGG
AAACCGGTTACTCTTTCTCAGGTTTTTGATGAGTTAAATCTGAATGTTTA
TGATTTGAGTGTGGATAAACTGGACGTGCATGCTGATGGGAGTTTATTTC
ATAGATTTGATAAATTCAATGCCAAATATAACCCAATTGGGAAAAGTAAA
GTTcgtgaaattttcatgaaaa Run BLAST on NCBI transcript from alignment at sc0001341:47569..52536+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035627 ID=TCONS_00035627|Name=TCONS_00035627|organism=Clytia hemisphaerica|type=transcript|length=4968bp|location=Sequence derived from alignment at sc0001341:47569..52536+ (Clytia hemisphaerica)
AGAGCGTTCCCTGAGAATATTCATAGGAACCCTTGTAAATTCTCGTTTCA
CtagtaaaattacaaaattttaaataaaaagataaaaatactGGAAAATA
TCACGACGACAGTTTTTTCTACTATTTTCCATTTTGTTCTTAGGGGAAAA
CTAAAAGAAAACCCGTGAAAATATAAATTAGGGGTTTCCCTAATAATTTA
TGTCTTTTTCGAGTAACTAAAACCAGCGAGTTCCTTTGGCGAGTGAGAAG
AACAATACTTCACTCGCCGCTCGCTGACCTTCAATAGGGTAACAACAATG
GCGTCTGGCAAAGGTAAACAAAGTCTTGAACCTATATCAACTACAAGCAT
TGAGGACAGTGACACAGATAGTGATGCAGGTGCTAACCTTCGTTCACCTA
AAGATAAAGCCAGAAGGGAGAAAATAATCGATAATTGGAAGCATATTGCA
CACAAAACCAAACCTCTTACATCAGTCATGTCAATGTATACATCGACCTT
TCAAAGTACACTGGATCATTTTTCATCATCAAATGATgcatttgattcaa
attttgaatttgccCATGCACAAGATCAAActacactttttaattttcct
caaaaaccAATTGAGAAGCAGGCTTTACTGCAAGAAGAAGTAGAGATAGA
GCAAAGAGCAAACCGTAAGCGGAAAGAAACAGTTGCTGATACTCAAAGTT
TTGATGGAGATTCTAAACATCGATGTACTGAAGACCTTAATTTTGACTTG
GCAAGGAAGTTAACACCTTGCTTTCAAAGGATTAATGTAGGGGAGCAAGG
TGCTGCTGGGGTAAGAATCTGTATatcttaattttctttttttaaattca
tgttttttttgtcaaatctcctgattaaagatttttagtgattttttatA
TTAGCTAGCTGTCAGAAAGATATGAAATAAGAATACAGGGCACAGGTCCA
ACTAAATCATTCCCATCCCTTCAATAAAAGAATAGGCCTCTATGAACTGT
AAAAATTAAGTTAGAATTCAATGAGATTAATTTTCGCCAGGTAGATAGAA
TATATAGAATTAGCTCTTAGTTTTTAAGATGATTTATGTAATTATAATAA
TTGTTTATTTTCTTCTGTTCTGTTTATTATGTTTGTTTTTCAGAGattga
ttttgaaagtgagggggCTAAATGATATAGTTATAAGGAGGCCCCATTAA
GTTGGGGCCAATGGGctgggaaattttttgaaattaaggTGGTGCTTTAC
ATTGactcaatcaatcaattgatCAAATCAAGGAAATTAAATCTGTTGGT
TACATTATGTTTATTCTCGTGAAAGTTAAtttgaaacataaaatactttc
cAAAACAAGATTTCTGATTTCCTACTGTTTTTGCAGAAGAACTTCAATAC
TATAGTATTATAATTGACAAATAAAACTTATCTCTGCATAGTAATTAGCT
TACATCGTTAATGATTACTCTTTACTTCCTTTTTTTAATAGGTTCCTGTT
GACGAGTTAAATCAAGCTGCTCAGCTGTTATGTGAAGCTTTGTATATCAG
GGCAAAGTATATGGCTTTGAGTCTTCAAAGTTTCAATTCTACAACTGCGT
CGTCTTTGGAAAATGTCAATGATGAGTATAAGTTGGATAAAATGTACAAT
AAATTGGCTGAGGATGCTGTAACAACTCCAAGACGTAATACTCTTATTCA
TGTTGTAACTTTGTTTGAAGTAAGATGATAGTTTGAACGCATTGTTGAAT
TGCAATTAAATGTTGAAAGTTATTTTTGGAAGGATTGTACTTGTAGACTG
ATTTTCCCCTatgaataaaaaattcgaattatttGTTTAGCTACTTGTGT
ATTGGAACAAGGAAATCCCAACCTGAATTGTGATGGAAGTGTTTGGAAAC
CATTTGAGTGTGATATCCCAGGAGATATTGGATACAATGTTGAACTTGTC
GATGgtgtttttcaagttttgagTTGCAAAAAACCGGTTGATGGAGACTC
ACCAAACAAGAAGAGCACATTGCATCCTTATCCCTGCATTGAAGAATTCA
TGgaagatcaaaagtttctactaGCACTTTCAACTCATGGGCCTGTGTAT
GTTACTGTTTTTATAAATCataataaaatatttgtttaggtCCTCTTGAA
ATTGATCTAATTATATATGCTTCAAGTACTTATTATAATAAAGTTATACC
AATAATATGTCAGTTTATTGATTTAAAGAATTGtctgttatttttctttt
tcaggaaaTCATTCACATTTCGCCGACTTCAGTATCTCCATTCAAAGTTC
AAATTACATTGTTTATTGAATGAGATGAAAGAGCTTGCCTCCCAAAAGGA
AATACCTCATCGTGATTTCTACAACGTCAGAAAAGTATGAATCTTGTCAT
TAATCTTGAAGACCTTTAAAATCTCCTTTTCCTAATTTTATCATGATTGT
AAAGTGTGATTTTCAAACcatgaaatcaaaaattaactATTATCTCAGTA
TCACAAGACCCACTTTATAAAATTCATATATGAGGAATgctacaatgtat
agcaatgtgccctcctggttattaccataatggctttatggcaactcctg
aacttgggcataGGATGTATATGAGGAATGCTAAAGATTAACAAATCCag
catttttaaaagctttAACTATGATTTGCAATATGCTACTCCCCCATTTT
TAAGGTGGACACTCACATTCATGCTTCATCAGCTATGAACCAAAAACATT
TGCTTCGTTTCatcaaaaagaaagtaaaaaaacatGGGGATGATGTTGTA
GAAATGAAAGATGGGAAACCGGTTACTCTTTCTCAGGTACCTTTATTATT
TTACTCTACACATATTACTTGTTTGTAGATGAagcttgaaaatttgaaca
gaGTACTTTTAAGACATTTGGTGTTCAAAGTCTTGGAGGAAAGAAACTTC
CTCAGTCTATTTACTATTTTCagtgtatttttatttttaaaaacttttag
aaaaaatctttacatGGGAGCTAAAATTAGTGCTTTCCAATATCTTATCC
CTAGTAAGACTGTTTTACTTCTGAAAGAAACAGCACTATTTTTGATATAT
TACAATGAAAGATCCAATCATTTTAATGCAATCTTATTTCTTATTATCAG
CTTCTTTGTAAGGATCCTATTTCCCCTATTTTATCTTATTTCAGGTTTTT
GATGAGTTAAATCTGAATGTTTATGATTTGAGTGTGGATAAACTGGACGT
GCATGCTGTAAGTCAAGTTGAATATTAATAGAATTATGGCACTGGTGAAA
AATATATTCCCAGCTGTCTATTTTGGggttgttttaaattttgttcaCAA
AATCaatcacaaaatcaaaaagaaaatgttcaaaccTAATGATTTTAAAG
TTTGGAAGTTTTATATTCTttgcaatattttcaaaatttgaattgagttt
aaGTTAATTCATTCAGTAAAACTTTATTGCACACTGTGAAtcattttgta
aacattaatttttgatgtactgacacatttttttatttttcatgagtAAT
ACAAGTTTCCCTATTCATATTGAAAACAAGGGTTTTTCCATacactttta
ataaaaattggATGCTTTTGATAAAATAGCTATAACAGAATATTGTTTGA
AAAGAATTAGCATGCAGTGCAGGGTTGAATTGGTAGCAAAGTAGCATctt
attcttttcaaaacattgttAAAAATGTACTTGCGAAAAACACCTCTGCT
CTTACCTCAATAAACAACAGGATGTAAAAGTTTGTTTATAAAGCCATAAT
AAGTCAAATGTAAATCGATAATGTCTGATGACTGATTTGCAATCAAATGA
TTTATTTATTCATAACatgcaaataaaaattttgcaaagaGTTGTTTGTA
ACTTTCTTCTCTGTGATTGATTTCCATCAggagaatttaaaaaagttttg
gttCCACCTAAATATTTCTAAATGATAAAGCAAGCTGAATCTGGTTTTGG
AGTTTGAAATCATCTACAattatttctaaatttgtaagaattttttatca
aaacaaatcaaattccAGAACAAATCAGTTTAAAAAAGTactcaacaaca
aaaaaaccaGTTAACGTTAGAGAAACTATTTTATATTAGGAgcatcatat
ttttcaaaattccttaaaaaaatgtttatactTGTTAAAAAACACCTACT
CTTACCTCAATAAACAACAGGATGtcaaagtttgtttacaaagCAATGCT
AAGTCAAATCGAAGTcggaaataataaataaaaatctaGTGTATGATGAT
CGATTTGTAATCAAATGATTGCTTGTTTATTTGTTCATAACACACACACA
CAACAATTTTCCAAAGAGtcattttgtaatattttgtaatattttcttCC
TATTAAAGCtagttgaattaaaaaaaacacaaaagttgaaaataaaactg
aaaaaattgaaaataaaactgCACCCAATTGAACATAAATAATTATCTTC
TCCTACCAGTATTTTTATTGTACAACTACTGCTACCAAAGTAAACTGACT
GAATTATAAGATACTGAAAATCTAGgcacttttttaaaataaaaagtttt
tctgtcaCATCTCTCAGTAAAAAATCTCTGCTGAAAAACTGTCACTTTTA
TTCTTTAGGATGGGAGTTTATTTCATAGATTTGATAAATTCAATGCCAAA
TATAACCCAATTGGTATGTAGTATTTTTAAATGTTATCTAGCAAATTTAT
CACTTGAAGACACATCATTTTATATATTAATATTTCCACAATTTATCGAG
TCTCTTGATTTGCCATCTCTCTGCAACTGGAAAGAATATTTCTCTCTTTT
TGTCTTTCACTTGTTTCATTACAATGATCTTGATGTCCAAGATGATACCC
CACTTCTGCATATTAACACCTTGATTTCCTTTTAGGGAAAAGTAAAGTTc
gtgaaattttcatgaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035627-exon-sc0001341-1491911889:47569..48378 | TCONS_00035627-exon-sc0001341-1491911889:47569..48378 | Clytia hemisphaerica | exon |
| TCONS_00035627-exon-sc0001341-1510915933:47569..48378 | TCONS_00035627-exon-sc0001341-1510915933:47569..48378 | Clytia hemisphaerica | exon |
| TCONS_00035627-exon-sc0001341-1575043694:47569..48378 | TCONS_00035627-exon-sc0001341-1575043694:47569..48378 | Clytia hemisphaerica | exon |
| TCONS_00035627-exon-sc0001341-1491911889:49060..49252 | TCONS_00035627-exon-sc0001341-1491911889:49060..49252 | Clytia hemisphaerica | exon |
| TCONS_00035627-exon-sc0001341-1510915933:49060..49252 | TCONS_00035627-exon-sc0001341-1510915933:49060..49252 | Clytia hemisphaerica | exon |
| TCONS_00035627-exon-sc0001341-1575043694:49060..49252 | TCONS_00035627-exon-sc0001341-1575043694:49060..49252 | Clytia hemisphaerica | exon |
| TCONS_00035627-exon-sc0001341-1491911889:49409..49664 | TCONS_00035627-exon-sc0001341-1491911889:49409..49664 | Clytia hemisphaerica | exon |
| TCONS_00035627-exon-sc0001341-1510915933:49409..49664 | TCONS_00035627-exon-sc0001341-1510915933:49409..49664 | Clytia hemisphaerica | exon |
| TCONS_00035627-exon-sc0001341-1575043694:49409..49664 | TCONS_00035627-exon-sc0001341-1575043694:49409..49664 | Clytia hemisphaerica | exon |
| TCONS_00035627-exon-sc0001341-1491911889:49823..49952 | TCONS_00035627-exon-sc0001341-1491911889:49823..49952 | Clytia hemisphaerica | exon |
| TCONS_00035627-exon-sc0001341-1510915933:49823..49952 | TCONS_00035627-exon-sc0001341-1510915933:49823..49952 | Clytia hemisphaerica | exon |
| TCONS_00035627-exon-sc0001341-1575043694:49823..49952 | TCONS_00035627-exon-sc0001341-1575043694:49823..49952 | Clytia hemisphaerica | exon |
| TCONS_00035627-exon-sc0001341-1491911889:50273..50404 | TCONS_00035627-exon-sc0001341-1491911889:50273..50404 | Clytia hemisphaerica | exon |
| TCONS_00035627-exon-sc0001341-1510915933:50273..50404 | TCONS_00035627-exon-sc0001341-1510915933:50273..50404 | Clytia hemisphaerica | exon |
| TCONS_00035627-exon-sc0001341-1575043694:50273..50404 | TCONS_00035627-exon-sc0001341-1575043694:50273..50404 | Clytia hemisphaerica | exon |
| TCONS_00035627-exon-sc0001341-1491911889:50763..50825 | TCONS_00035627-exon-sc0001341-1491911889:50763..50825 | Clytia hemisphaerica | exon |
| TCONS_00035627-exon-sc0001341-1510915933:50763..50825 | TCONS_00035627-exon-sc0001341-1510915933:50763..50825 | Clytia hemisphaerica | exon |
| TCONS_00035627-exon-sc0001341-1575043694:50763..50825 | TCONS_00035627-exon-sc0001341-1575043694:50763..50825 | Clytia hemisphaerica | exon |
| TCONS_00035627-exon-sc0001341-1491911889:52227..52281 | TCONS_00035627-exon-sc0001341-1491911889:52227..52281 | Clytia hemisphaerica | exon |
| TCONS_00035627-exon-sc0001341-1510915933:52227..52281 | TCONS_00035627-exon-sc0001341-1510915933:52227..52281 | Clytia hemisphaerica | exon |
| TCONS_00035627-exon-sc0001341-1575043694:52227..52281 | TCONS_00035627-exon-sc0001341-1575043694:52227..52281 | Clytia hemisphaerica | exon |
| TCONS_00035627-exon-sc0001341-1491911889:52504..52536 | TCONS_00035627-exon-sc0001341-1491911889:52504..52536 | Clytia hemisphaerica | exon |
| TCONS_00035627-exon-sc0001341-1510915933:52504..52536 | TCONS_00035627-exon-sc0001341-1510915933:52504..52536 | Clytia hemisphaerica | exon |
| TCONS_00035627-exon-sc0001341-1575043694:52504..52536 | TCONS_00035627-exon-sc0001341-1575043694:52504..52536 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001341 | supercontig | sc0001341:47569..52536 + |
Blast
BLAST of TCONS_00035627 vs. Swiss-Prot (Human)
Match: AMPD2 (AMP deaminase 2 OS=Homo sapiens GN=AMPD2 PE=1 SV=2) HSP 1 Score: 288.115 bits (736), Expect = 4.226e-86 Identity = 153/302 (50.66%), Postives = 208/302 (68.87%), Query Frame = 1
Query: 772 FQRINVGEQGAAGVPVDELNQAAQLLCEALYIRAKYMALSLQSFNSTTASSLENVNDEYKLDKMYNKLAEDAVTTPRPT--CVLEQGNPNLNCDGSVWKPFECDIPGDIGYNVELVDGVFQVLSCKKPVDGDSPNKKSTLHPYPCIEEFMEDQKFLLALSTHGPVKSFTFRRLQYLHSKFKLHCLLNEMKELASQKEIPHRDFYNVRKVDTHIHASSAMNQKHLLRFIXXXXXXHGDDVVEMKDGKPVTLSQVFDELNLNVYDLSVDKLDVHADGSLFHRFDKFNAKYNPIGKSKVREIFMK 1671
FQR+ + + GVP +L AA+ + AL+IR KYMALSLQSF TT L+ + ++ + Y + + V+ P LEQ +P +C+ S +PGD+G + +V GV V + ++P D + L PYP ++EF+ D L+AL +GP+KSF +RRLQYL SKF++H LLNEMKELA+QK++PHRDFYN+RKVDTHIHASS MNQKHLLRFIK+ +K+H +++V ++ G+ TL +VF+ +NL YDLSVD LDVHAD + FHRFDKFNAKYNPIG+S +REIF+K
Sbjct: 219 FQRVTISGEEKCGVPFTDLLDAAKSVVRALFIREKYMALSLQSFCPTTRRYLQQLAEKPLETRTYEQGPDTPVSADAPVHPPALEQ-HPYEHCEPST-------MPGDLGLGLRMVRGVVHVYTRREP---DEHCSEVEL-PYPDLQEFVADVNVLMALIINGPIKSFCYRRLQYLSSKFQMHVLLNEMKELAAQKKVPHRDFYNIRKVDTHIHASSCMNQKHLLRFIKRAMKRHLEEIVHVEQGREQTLREVFESMNLTAYDLSVDTLDVHADRNTFHRFDKFNAKYNPIGESVLREIFIK 508
The following BLAST results are available for this feature:
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