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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035620 ID=TCONS_00035620|Name=TCONS_00035620|organism=Clytia hemisphaerica|type=transcript|length=681bp
CACATCAACACATCAAGCCCACTCAAAcccaacaaaacaaaatcacAATT
TAACACTGAAACGCAAGCACCACagacacaaagtccaaaacaagGCCAGA
AGTACCCTCAGAACAATCTCTCTTCACACAATATAACAAAAGCTAGCACA
AAACTTGCTCAAAACTATGAAAATCgaaccaaaacaaatcaaaaaggtCC
ACTCGAAAGTGAATTATCCGAAATCTCAAAACTCCGAAACAAACTTCTAT
CTTCATCAACTAACAGAACAAACTTCTTAACAAAGAATATAAGCAGACCA
ACATTGAGCAATCAAACAACAAACGCACCCATATTGAATCCAAAAACATC
ACATTTGAATCTAAACACATCAACACGTGGATGGATCGAGTCCCAGACCC
CTTTACAACGCAAATGCGAAGAAATTGATACGCGGCGAAATAAAATCGGA
AATACAGGGAAAATTGACATTGGAGTTGCGTTACTAAGCGACGTCTCGTT
GCTACAAACCATAAAACGAAAACTACAAAGAAAAATGGCAAGGTAGTGGA
CGAGCCAGGCAAACCATCAAACAATACTGAGCGTGCTCGGCAGAACGAAG
AAAATGCGAAATCTAATGAAGAAAGAAAACATCAAAGTGATAAAAACAAC
CAAGCAAACAATAAACAATCATTATCCAATG Run BLAST on NCBI protein sequence of TCONS_00035620-protein >TCONS_00035620-protein ID=TCONS_00035620-protein|Name=TCONS_00035620-protein|organism=Clytia hemisphaerica|type=polypeptide|length=181bp
HINTSSPLKPNKTKSQFNTETQAPQTQSPKQGQKYPQNNLSSHNITKAST
KLAQNYENRTKTNQKGPLESELSEISKLRNKLLSSSTNRTNFLTKNISRP
TLSNQTTNAPILNPKTSHLNLNTSTRGWIESQTPLQRKCEEIDTRRNKIG
NTGKIDIGVALLSDVSLLQTIKRKLQRKMAR Run BLAST on NCBI transcript from alignment at sc0001340:6859..8071- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035620 ID=TCONS_00035620|Name=TCONS_00035620|organism=Clytia hemisphaerica|type=transcript|length=1213bp|location=Sequence derived from alignment at sc0001340:6859..8071- (Clytia hemisphaerica)
CACATCAACACATCAAGCCCACTCAAACCCAACAAAACAAAATCACAATT
TAACACTGAAACGCAAGCACCACAGACACAAAGTCCAAAACAAGGCCAGA
AGTACCCTCAGAACAATCTCTCTTCACACAATATAACAAAAGCTAGCACA
AAACTTGCTCAAAACTATGAAAATCGAACCAAAACAAATCAAAAAGGTCC
ACTCGAAAGTGAATTATCCGAAATCTCAAAACTCCGAAACAAACTTCTAT
CTTCATCAACTAACAGAACAAACTTCTTAACAAAGAATATAAGCAGACCA
ACATTGAGCAATCAAACAACAAACGCACCCATATTGAATCCAAAAACATC
ACATTTGAATCTAAACACATCAACACGTGGATGGATCGAGTCCCAGACCC
CTTTACAACGCAAATGCGAAGAAATTGATACGCGGCGAAATAAAATCGGA
AATACAGGGAAAATTGACATTGGAGTTGCGTTACTAAGCGACGTCTCGTT
GCTACAAACCATAAAACGAAAACTACAAAGAAAAATGGCAAGGTAATCGA
GAAAAATTTATTTTATATCGGTGTAATACTTACAGAATTTGTCATTTCAT
TTCAACAATGAGCCGAATCTTTCAATTCGCTTACACAGCATTTTTAAGCA
AAAAGAAAGAGCAACTTTTTCTTCTCTTTTGACGCCACACGAGTACAAAC
TTTGGAGAACTAAAAGTAAGTATATTCGTCGGGTTCCTGTCGGGGTAGCC
GGGTGTGAGGGAGTCTATCCACTTTTCTATTTGCGCTAAAGCTTAGAGAT
AAAATCCTGAGGTAGAACACCACACCTAGTCTCATCTCGCAGTAACTTAC
CGCCTAAATCAGATTACCCAATATATGCTTCTCATTCGCTGAGTTCGCAG
TGACTGGAGATCGAATCCGCAACTTTTGGATTGTAAGGCGAATGCTAAAC
CGACTGAGCTCCCCGACCACGAGAAACTCTATTGTTAATTGTGTTTTGTC
AGAAAATATTTAAAATACGTCGAATACGTTTGAAATACTTTTATGGCAGT
CAACCTTAATGGTTCCATTTTCAGGTAGTGGACGAGCCAGGCAAACCATC
AAACAATACTGAGCGTGCTCGGCAGAACGAAGAAAATGCGAAATCTAATG
AAGAAAGAAAACATCAAAGTGATAAAAACAACCAAGCAAACAATAAACAA
TCATTATCCAATG Coding sequence (CDS) from alignment at sc0001340:6859..8071- >TCONS_00035620 ID=TCONS_00035620|Name=TCONS_00035620|organism=Clytia hemisphaerica|type=CDS|length=1092bp|location=Sequence derived from alignment at sc0001340:6859..8071- (Clytia hemisphaerica)
GTAGCACATCAACACATCAAGCCCACTCAAACCCAACAAAACAAAATCAC
AATTTAACACTGAAACGCAAGCACCACAGACACAAAGTCCAAAACAAGGC
CAGAAGTACCCTCAGAACAATCTCTCTTCACACAATATAACAAAAGCTAG
CACAAAACTTGCTCAAAACTATGAAAATCGAACCAAAACAAATCAAAAAG
GTCCACTCGAAAGTGAATTATCCGAAATCTCAAAACTCCGAAACAAACTT
CTATCTTCATCAACTAACAGAACAAACTTCTTAACAAAGAATATAAGCAG
ACCAACATTGAGCAATCAAACAACAAACGCACCCATATTGAATCCAAAAA
CATCACATTTGAATCTAAACACATCAACACGTGGATGGATCGAGTCCCAG
ACCCCTTTACAACGCAAATGCGAAGAAATTGATACGCGGCGAAATAAAAT
CGGAAATACAGGGAAAATTGACATTGGAGTTGCGTTACTAAGCGACGTCT
CGTTGCTACAAACCATAAAACGAAAACTACAAAGAAAAATGGCAAGGTAG
CACATCAACACATCAAGCCCACTCAAACCCAACAAAACAAAATCACAATT
TAACACTGAAACGCAAGCACCACAGACACAAAGTCCAAAACAAGGCCAGA
AGTACCCTCAGAACAATCTCTCTTCACACAATATAACAAAAGCTAGCACA
AAACTTGCTCAAAACTATGAAAATCGAACCAAAACAAATCAAAAAGGTCC
ACTCGAAAGTGAATTATCCGAAATCTCAAAACTCCGAAACAAACTTCTAT
CTTCATCAACTAACAGAACAAACTTCTTAACAAAGAATATAAGCAGACCA
ACATTGAGCAATCAAACAACAAACGCACCCATATTGAATCCAAAAACATC
ACATTTGAATCTAAACACATCAACACGTGGATGGATCGAGTCCCAGACCC
CTTTACAACGCAAATGCGAAGAAATTGATACGCGGCGAAATAAAATCGGA
AATACAGGGAAAATTGACATTGGAGTTGCGTTACTAAGCGACGTCTCGTT
GCTACAAACCATAAAACGAAAACTACAAAGAAAAATGGCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035620-exon-sc0001340-1575043694:7530..8071 | TCONS_00035620-exon-sc0001340-1575043694:7530..8071 | Clytia hemisphaerica | exon |
| TCONS_00035620-exon-sc0001340-1575043694:6859..6997 | TCONS_00035620-exon-sc0001340-1575043694:6859..6997 | Clytia hemisphaerica | exon |
| TCONS_00035620-exon-sc0001340-1510915933:7530..8071 | TCONS_00035620-exon-sc0001340-1510915933:7530..8071 | Clytia hemisphaerica | exon |
| TCONS_00035620-exon-sc0001340-1510915933:6859..6997 | TCONS_00035620-exon-sc0001340-1510915933:6859..6997 | Clytia hemisphaerica | exon |
| TCONS_00035620-exon-sc0001340-1491911889:7530..8071 | TCONS_00035620-exon-sc0001340-1491911889:7530..8071 | Clytia hemisphaerica | exon |
| TCONS_00035620-exon-sc0001340-1491911889:6859..6997 | TCONS_00035620-exon-sc0001340-1491911889:6859..6997 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001340 | supercontig | sc0001340:6859..8071 - |
Blast
The following BLAST results are available for this feature:
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