TCONS_00035609 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035609
Unique NameTCONS_00035609
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length218

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035609 ID=TCONS_00035609|Name=TCONS_00035609|organism=Clytia hemisphaerica|type=transcript|length=218bp
caacaaaacccccggaaaatttaaaatgtcggaatgagcagtagacaacc
ttcttttgagaccttgtaattatccttttccAACCAAAAACACAACCAGG
GCTCATTGGGAGTTCTGAAGCCGATATCGATTCTCCATAAACCCGCAACT
CGACTCCAAGCAAAGGGTTTTTCTTAGGAGAAGAGCGCGGATTCTAGACT
GTTCGAACCAGAGCTGGC
Run BLAST on NCBI

transcript from alignment at sc0001339:51023..51240

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035609 ID=TCONS_00035609|Name=TCONS_00035609|organism=Clytia hemisphaerica|type=transcript|length=218bp|location=Sequence derived from alignment at sc0001339:51023..51240 (Clytia hemisphaerica)
GCCAGCTCTGGTTCGAACAGTCTAGAATCCGCGCTCTTCTCCTAAGAAAA
ACCCTTTGCTTGGAGTCGAGTTGCGGGTTTATGGAGAATCGATATCGGCT
TCAGAACTCCCAATGAGCCCTGGTTGTGTTTTTGGTTggaaaaggataat
tacaaggtctcaaaagaaggttgtctactgctcattccgacattttaaat
tttccgggggttttgttg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020857XLOC_020857Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035609-exon-sc0001339-1491911889:51023..51240TCONS_00035609-exon-sc0001339-1491911889:51023..51240Clytia hemisphaericaexon
TCONS_00035609-exon-sc0001339-1510915933:51023..51240TCONS_00035609-exon-sc0001339-1510915933:51023..51240Clytia hemisphaericaexon
TCONS_00035609-exon-sc0001339-1575043694:51023..51240TCONS_00035609-exon-sc0001339-1575043694:51023..51240Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001339supercontigsc0001339:51023..51240 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.10446	2.48883	2.89605	4.24944	9.394	5.43955	3.28129	1.53595	5.81894	10.1029	2.90763	3.39954	2.50027	8.9223	5.50112	5.4434	14.2043	3.52408	15.0488	7.0976	2.47313	2.16231	0	0	5.48043	8.55952	6.99922	2.93047	4.25957	0.52557
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035609 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top