TCONS_00035607 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035607
Unique NameTCONS_00035607
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length483

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035607 ID=TCONS_00035607|Name=TCONS_00035607|organism=Clytia hemisphaerica|type=transcript|length=483bp
CAGCAAACAACATTCTCTATGAACAGTTAGATGGTGTTAGTATGGGAAGT
TCACTTGGCCCAGTACTAGCAAATATCATAATGACAGAACTCGAACAATC
TGTCATTAAACCTTATATTGATTCTGGTATCGTAAAGTTTTACACAAGAT
ACGTTGATGATACACTCCTTGTCATTCGTCCAGTAGATATCGATAAAGTT
CATTGCTCCCTTaacaaatttgataaaaatcttcaatttacAGTTGACAA
ATTTGAAGATGAAACACCGCACTTCTTAGATCTGGAGATTTCACCAAATG
GTCTatctatatttaaaaaagatacaaaCACTGGCTTATATACAAATTTT
GATAGCTACGCTCCTTGGTCTTACCGAAAAGTATGGATTTCTAGCCTTGC
CAACCGTGCCACCAAACTTTGTCATCCTgctaaattgaaaaatgaaatta
accTGATCAAAAAGTTCGCTTCTTGGAATGGTN
Run BLAST on NCBI

protein sequence of TCONS_00035607-protein

>TCONS_00035607-protein ID=TCONS_00035607-protein|Name=TCONS_00035607-protein|organism=Clytia hemisphaerica|type=polypeptide|length=160bp
ANNILYEQLDGVSMGSSLGPVLANIIMTELEQSVIKPYIDSGIVKFYTRY
VDDTLLVIRPVDIDKVHCSLNKFDKNLQFTVDKFEDETPHFLDLEISPNG
LSIFKKDTNTGLYTNFDSYAPWSYRKVWISSLANRATKLCHPAKLKNEIN
LIKKFASWNG
Run BLAST on NCBI

transcript from alignment at sc0001339:34777..35259

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035607 ID=TCONS_00035607|Name=TCONS_00035607|organism=Clytia hemisphaerica|type=transcript|length=483bp|location=Sequence derived from alignment at sc0001339:34777..35259 (Clytia hemisphaerica)
NACCATTCCAAGAAGCGAACTTTTTGATCAggttaatttcatttttcaat
ttagcAGGATGACAAAGTTTGGTGGCACGGTTGGCAAGGCTAGAAATCCA
TACTTTTCGGTAAGACCAAGGAGCGTAGCTATCAAAATTTGTATATAAGC
CAGTGtttgtatcttttttaaatatagatAGACCATTTGGTGAAATCTCC
AGATCTAAGAAGTGCGGTGTTTCATCTTCAAATTTGTCAACTgtaaattg
aagatttttatcaaatttgttAAGGGAGCAATGAACTTTATCGATATCTA
CTGGACGAATGACAAGGAGTGTATCATCAACGTATCTTGTGTAAAACTTT
ACGATACCAGAATCAATATAAGGTTTAATGACAGATTGTTCGAGTTCTGT
CATTATGATATTTGCTAGTACTGGGCCAAGTGAACTTCCCATACTAACAC
CATCTAACTGTTCATAGAGAATGTTGTTTGCTG

Coding sequence (CDS) from alignment at sc0001339:34777..35259

>TCONS_00035607 ID=TCONS_00035607|Name=TCONS_00035607|organism=Clytia hemisphaerica|type=CDS|length=480bp|location=Sequence derived from alignment at sc0001339:34777..35259 (Clytia hemisphaerica)
ACCATTCCAAGAAGCGAACTTTTTGATCAggttaatttcatttttcaatt
tagcAGGATGACAAAGTTTGGTGGCACGGTTGGCAAGGCTAGAAATCCAT
ACTTTTCGGTAAGACCAAGGAGCGTAGCTATCAAAATTTGTATATAAGCC
AGTGtttgtatcttttttaaatatagatAGACCATTTGGTGAAATCTCCA
GATCTAAGAAGTGCGGTGTTTCATCTTCAAATTTGTCAACTgtaaattga
agatttttatcaaatttgttAAGGGAGCAATGAACTTTATCGATATCTAC
TGGACGAATGACAAGGAGTGTATCATCAACGTATCTTGTGTAAAACTTTA
CGATACCAGAATCAATATAAGGTTTAATGACAGATTGTTCGAGTTCTGTC
ATTATGATATTTGCTAGTACTGGGCCAAGTGAACTTCCCATACTAACACC
ATCTAACTGTTCATAGAGAATGTTGTTTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020855XLOC_020855Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035607-proteinTCONS_00035607-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035607-exon-sc0001339-1491911889:34777..35259TCONS_00035607-exon-sc0001339-1491911889:34777..35259Clytia hemisphaericaexon
TCONS_00035607-exon-sc0001339-1510915933:34777..35259TCONS_00035607-exon-sc0001339-1510915933:34777..35259Clytia hemisphaericaexon
TCONS_00035607-exon-sc0001339-1575043694:34777..35259TCONS_00035607-exon-sc0001339-1575043694:34777..35259Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001339supercontigsc0001339:34777..35259 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.129481	0	0.160451	0.159963	2.07705	0.852091	1.36557	0.658046	0.122493	0	0	0.359537	0.265131	0.0933012	0.075128	0.236706	0.700797	0.238817	0.550564	0.44059	1.53516	1.39881	0.525353	1.47341	0.154859	0	0.391838	0.810735	0	0.182171
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035607 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top