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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035606 ID=TCONS_00035606|Name=TCONS_00035606|organism=Clytia hemisphaerica|type=transcript|length=1592bp
CCGATGCCGAAGAGGGAGACTGGAACCTCTACCGTAAAGCTCGTAATGAA
CTAAAGACTCTCATTCGTGTAACCAAATCTTCTTTCTTCCGGTGTGGTCT
ACCATCCATCGTATCCTCAAGCCGAATCCTCAAAAGATCCACGCTGAGCC
TGACACCCTCAACCAAGACTTCAACACAACTGCTGGGAGACATAATAATT
CACAACCGAAACCAGAGCAGCTCCTTCACCAACTCATTGACGATCTACCT
GAATTTCATGACGCGTTCACCATTACCCAAGTCTTCTACGCTGATGTTCG
TAAAGCCATTAGAAATCTTCGGGGCGATTGCTCAACCGGTCACGACCAAA
TGCCATCAAAATACATAAAACTGTCCACAGATGAAATCTGCAGTCCGATA
TGTCACATCATTAACACCTCTATTCAACAATCGATCTTCCCAAGTCaatg
gaaaatatcaaaaatcagcCCAATTCCTAAAATTGAATCATCGAATGAGC
CAAGTGATTATCGTCCAATATCGATTTTACCCATTCTAtcaaaaatttac
gaaaaactCATCATGATACAAATGACAAACTTTCTTGAACACCAGGAACT
CTTGTCACAATACCAATCTGGCTTTCGTAAGGGCCATTGCACTGTAACCA
CAtgtattaaaatcaaaaatgacaTTCTGAAAGCTATGCACCACGGAGAG
ATCACACTTGCTGTTCTTGCCGATTTCTCGAAAGCATTTGACACCGTTGA
CTTTGAAACTCTGATAAAAAAGCTTCATTCACTCCACTTCTCGAAGAAGT
CCTTACGTATTCTTGCAAACTACCTCAGCAGTCAACAACAGTACGTGCAA
ATTGATGATAAGAGATCACCCGTCTTAACTGTCACTAATGGTGTGCTGCA
AGGGAGCATATTGGGTCCCGTCCTCTTTAACCTCTTTAACTTCACGACAT
GGCATCTAAGACCAACGCCAAATGTGTTCAGTATGCCGACGACACCAGCA
TCTATCGTCACACCAAACCTGCCAACCTTGAACTATGTAGTCAAGAAGTT
CAGAACGATGTCAATGTTATCGAGAAGTGGTGACGCGACTCAAACTTAAT
CTTCAAtgcaaaaaagacaaaatcgaTGCTCTTTGCCACCAGTCAAATGG
CACGAAGACAcgactttacttttgagataaAATCAAACAACGAAATGATA
ATCGAGCGAGTTCCGTCATTCAAACTGCTTGGTGTCACGTTTAACGAAAA
TCTCACATGGAACGCCCATGTTAAAAATNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNAAtcaaacaagcgatacttttatggacctacctggtt
atcaaactaatcagtgaacattgaaacaatgaaacacataagacataact
ggtcaaaatacaacaaaataaagaaaatgaaagcatatattgagagaaac
tatcaacactattgaaaaagatttttgaaaagaaataaaaaagctattaa
gcgcttttctttataaaaaccactatcagaaaaatgcacagcttaataaa
taaggtttccagaaaactcaaaccatcgcgctctaccgtgac Run BLAST on NCBI protein sequence of TCONS_00035606-protein >TCONS_00035606-protein ID=TCONS_00035606-protein|Name=TCONS_00035606-protein|organism=Clytia hemisphaerica|type=polypeptide|length=249bp
MPSKYIKLSTDEICSPICHIINTSIQQSIFPSQWKISKISPIPKIESSNE
PSDYRPISILPILSKIYEKLIMIQMTNFLEHQELLSQYQSGFRKGHCTVT
TCIKIKNDILKAMHHGEITLAVLADFSKAFDTVDFETLIKKLHSLHFSKK
SLRILANYLSSQQQYVQIDDKRSPVLTVTNGVLQGSILGPVLFNLFNFTT
WHLRPTPNVFSMPTTPASIVTPNLPTLNYVVKKFRTMSMLSRSGDATQT Run BLAST on NCBI transcript from alignment at sc0001339:20307..21898 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035606 ID=TCONS_00035606|Name=TCONS_00035606|organism=Clytia hemisphaerica|type=transcript|length=1592bp|location=Sequence derived from alignment at sc0001339:20307..21898 (Clytia hemisphaerica)
gtcacggtagagcgcgatggtttgagttttctggaaaccttatttattaa
gctgtgcatttttctgatagtggtttttataaagaaaagcgcttaatagc
ttttttatttcttttcaaaaatctttttcaatagtgttgatagtttctct
caatatatgctttcattttctttattttgttgtattttgaccagttatgt
cttatgtgtttcattgtttcaatgttcactgattagtttgataaccaggt
aggtccataaaagtatcgcttgtttgaTTNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNATTTTTAACATGGGCGTTCCATGTGAGATTTTCGTT
AAACGTGACACCAAGCAGTTTGAATGACGGAACTCGCTCGATTATCATTT
CGTTGTTTGATTttatctcaaaagtaaagtcgTGTCTTCGTGCCATTTGA
CTGGTGGCAAAGAGCAtcgattttgtcttttttgcaTTGAAGATTAAGTT
TGAGTCGCGTCACCACTTCTCGATAACATTGACATCGTTCTGAACTTCTT
GACTACATAGTTCAAGGTTGGCAGGTTTGGTGTGACGATAGATGCTGGTG
TCGTCGGCATACTGAACACATTTGGCGTTGGTCTTAGATGCCATGTCGTG
AAGTTAAAGAGGTTAAAGAGGACGGGACCCAATATGCTCCCTTGCAGCAC
ACCATTAGTGACAGTTAAGACGGGTGATCTCTTATCATCAATTTGCACGT
ACTGTTGTTGACTGCTGAGGTAGTTTGCAAGAATACGTAAGGACTTCTTC
GAGAAGTGGAGTGAATGAAGCTTTTTTATCAGAGTTTCAAAGTCAACGGT
GTCAAATGCTTTCGAGAAATCGGCAAGAACAGCAAGTGTGATCTCTCCGT
GGTGCATAGCTTTCAGAAtgtcatttttgattttaatacaTGTGGTTACA
GTGCAATGGCCCTTACGAAAGCCAGATTGGTATTGTGACAAGAGTTCCTG
GTGTTCAAGAAAGTTTGTCATTTGTATCATGATGagtttttcgtaaattt
ttgaTAGAATGGGTAAAATCGATATTGGACGATAATCACTTGGCTCATTC
GATGATTCAATTTTAGGAATTGGgctgatttttgatattttccattGACT
TGGGAAGATCGATTGTTGAATAGAGGTGTTAATGATGTGACATATCGGAC
TGCAGATTTCATCTGTGGACAGTTTTATGTATTTTGATGGCATTTGGTCG
TGACCGGTTGAGCAATCGCCCCGAAGATTTCTAATGGCTTTACGAACATC
AGCGTAGAAGACTTGGGTAATGGTGAACGCGTCATGAAATTCAGGTAGAT
CGTCAATGAGTTGGTGAAGGAGCTGCTCTGGTTTCGGTTGTGAATTATTA
TGTCTCCCAGCAGTTGTGTTGAAGTCTTGGTTGAGGGTGTCAGGCTCAGC
GTGGATCTTTTGAGGATTCGGCTTGAGGATACGATGGATGGTAGACCACA
CCGGAAGAAAGAAGATTTGGTTACACGAATGAGAGTCTTTAGTTCATTAC
GAGCTTTACGGTAGAGGTTCCAGTCTCCCTCTTCGGCATCGG Coding sequence (CDS) from alignment at sc0001339:20307..21898 >TCONS_00035606 ID=TCONS_00035606|Name=TCONS_00035606|organism=Clytia hemisphaerica|type=CDS|length=750bp|location=Sequence derived from alignment at sc0001339:20307..21898 (Clytia hemisphaerica)
TTAAGTTTGAGTCGCGTCACCACTTCTCGATAACATTGACATCGTTCTGA
ACTTCTTGACTACATAGTTCAAGGTTGGCAGGTTTGGTGTGACGATAGAT
GCTGGTGTCGTCGGCATACTGAACACATTTGGCGTTGGTCTTAGATGCCA
TGTCGTGAAGTTAAAGAGGTTAAAGAGGACGGGACCCAATATGCTCCCTT
GCAGCACACCATTAGTGACAGTTAAGACGGGTGATCTCTTATCATCAATT
TGCACGTACTGTTGTTGACTGCTGAGGTAGTTTGCAAGAATACGTAAGGA
CTTCTTCGAGAAGTGGAGTGAATGAAGCTTTTTTATCAGAGTTTCAAAGT
CAACGGTGTCAAATGCTTTCGAGAAATCGGCAAGAACAGCAAGTGTGATC
TCTCCGTGGTGCATAGCTTTCAGAAtgtcatttttgattttaatacaTGT
GGTTACAGTGCAATGGCCCTTACGAAAGCCAGATTGGTATTGTGACAAGA
GTTCCTGGTGTTCAAGAAAGTTTGTCATTTGTATCATGATGagtttttcg
taaatttttgaTAGAATGGGTAAAATCGATATTGGACGATAATCACTTGG
CTCATTCGATGATTCAATTTTAGGAATTGGgctgatttttgatattttcc
attGACTTGGGAAGATCGATTGTTGAATAGAGGTGTTAATGATGTGACAT
ATCGGACTGCAGATTTCATCTGTGGACAGTTTTATGTATTTTGATGGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035606-exon-sc0001339-1491911889:20307..21898 | TCONS_00035606-exon-sc0001339-1491911889:20307..21898 | Clytia hemisphaerica | exon |
| TCONS_00035606-exon-sc0001339-1510915933:20307..21898 | TCONS_00035606-exon-sc0001339-1510915933:20307..21898 | Clytia hemisphaerica | exon |
| TCONS_00035606-exon-sc0001339-1575043694:20307..21898 | TCONS_00035606-exon-sc0001339-1575043694:20307..21898 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001339 | supercontig | sc0001339:20307..21898 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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