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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035604 ID=TCONS_00035604|Name=TCONS_00035604|organism=Clytia hemisphaerica|type=transcript|length=1793bp
ATTGAGAGATATTGGCTCTCAAATCAACAGAGTCAATATCACCAATTTTG
ATTACCCAAATGTCGTTGAAAGATTGTGCACCCAATATTTTAACATTTAC
GCCCTATTTCTTCCAGCCCATTGCAATATCACTGTTTGGACAANCCAGCT
GGTGCAACCTATCCATCTCCATTCGCACACGTCCATAAAGGAGATTTGAC
CAAGATTGGTGGCAGCATTGGCTATGCAAAAGGAGACTGGCAAATCCCAA
CCGAAGAGTCTCGAAAATCAGAAATCAGGAAACTGGAGGATTTCAAGAAG
ACACTGCCTAAGAGTCTTGCAGAAAGTTCCAAACACGATAAGCAGCTAGA
GTTCATGGCTAGTCAGGGTATACGTCAACTTGGCCAACCCCGCATTGGAA
TTTATGCGGATCGTCAAAGACCTGATCCTTTGCATTTGGAAATCAATAGC
TGGCAGTATTTTCTCAATGTTGTTTACATAGAATCTGTTAGAAGAAATTT
ATTTGATGAAGTTGAAAAGGTTCTCACTCTGCCAAAATCTAACAATGGAT
GTGGCTTGAAACAAGTTGCAAAGTCACTGAGGGAACATTTTGATAAGCCT
GCAACACAAATGAAATCCATATCGTTACGTCTCGTTGGATCACAAGCCAT
CTGCCTTGCTCGGCATGGATATCGCTTGGTTGATGTGCTTGCGGGAAGCA
ATGAAAGTGAGGCAGAAGTTGTTAGGCGAGCTGCATTACCAAAAATTCAA
CAACTATTGAGAGATATTGGCTCTCAAATCAACAGAGTCAATATCACCAA
TTTTGATTACCCAAATGTCGTTGAAAGATTGTGCACCCAATATTTTAACA
TTTACGCCCTATTTCTTCCAGCCCATTGCAATATCACTGTTTGGACAATG
GGTTATATTATTCCATACCACACCAATCTACTCTTGAAAGATTACAAAAT
AGGCTACGGTATTCTCACAATGCAGGGAAAAGAATCAAAGCATTCGGCGA
TCAAGCAAGAATTGAAAATGAATTCCAATCGTTCAATCAATCAAGATGAA
TCAGGAAAGTGGTATCAACTTATGCGTGCAAATTTCATTAGAAGTTTCTA
TCTACCGTACCACATTCCTAGCCTCAAGCTTGCATATCATTCTCACTACC
AATCACGTATCCCACGCCTTGAAGAAGAATCAAATTATTGTACCTGTTCC
AGATTATAGGAATTGGATGAGAATCTTTGTACTGTTTGTAAAAAGGGTGT
ATTAGTGCTTGAATGTTCCAAAATTGGCATGCTGACTGatgaaattctca
aaatctACAAACCGATCAAATGTAATTTATGTAAAGAGCGTTTTCCTGAC
CAATCTCTACTTCAGTCCCACATCGCAAATAACCaaagccaaaataaaaa
agtctaaGACTATCGTTCCAAACCGGATGCGCATCACCCAGCTTAGAGAG
GCGtgcgaaaaaagaaatttgtccacaCTTGGGAATAAAGAACAACTTAG
ACGTAGGCTAGAAGGAGATGCTTCTTTCAATTAACTTGGCAATTCGCTCg
caatgaaaatttattttagtaatcttttttcaaaatttttagtctCAATC
CATATTTTCTTTCAACATTGTTTACTGTATATTTCTTGTGTAAACAGTTg
taaacatttaaaatttttttgtcaactcAGTTGATTTTTCTTGCGTAGAT
GTTGGaatcaaagtttttatttctttgctAATTCTATATATCATATTACA
AATGTCCtagccaggattcgaacctggatcTCAAGTATCATAG Run BLAST on NCBI protein sequence of TCONS_00035604-protein >TCONS_00035604-protein ID=TCONS_00035604-protein|Name=TCONS_00035604-protein|organism=Clytia hemisphaerica|type=polypeptide|length=284bp
MASQGIRQLGQPRIGIYADRQRPDPLHLEINSWQYFLNVVYIESVRRNLF
DEVEKVLTLPKSNNGCGLKQVAKSLREHFDKPATQMKSISLRLVGSQAIC
LARHGYRLVDVLAGSNESEAEVVRRAALPKIQQLLRDIGSQINRVNITNF
DYPNVVERLCTQYFNIYALFLPAHCNITVWTMGYIIPYHTNLLLKDYKIG
YGILTMQGKESKHSAIKQELKMNSNRSINQDESGKWYQLMRANFIRSFYL
PYHIPSLKLAYHSHYQSRIPRLEEESNYCTCSRL Run BLAST on NCBI transcript from alignment at sc0001339:13782..15574 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035604 ID=TCONS_00035604|Name=TCONS_00035604|organism=Clytia hemisphaerica|type=transcript|length=1793bp|location=Sequence derived from alignment at sc0001339:13782..15574 (Clytia hemisphaerica)
CTATGATACTTGAgatccaggttcgaatcctggctaGGACATTTGTAATA
TGATATATAGAATTagcaaagaaataaaaactttgattCCAACATCTACG
CAAGAAAAATCAACTgagttgacaaaaaaattttaaatgtttacAACTGT
TTACACAAGAAATATACAGTAAACAATGTTGAAAGAAAATATGGATTGag
actaaaaattttgaaaaaagattactaaaataaattttcattgcGAGCGA
ATTGCCAAGTTAATTGAAAGAAGCATCTCCTTCTAGCCTACGTCTAAGTT
GTTCTTTATTCCCAAGtgtggacaaatttcttttttcgcaCGCCTCTCTA
AGCTGGGTGATGCGCATCCGGTTTGGAACGATAGTCttagacttttttat
tttggctttGGTTATTTGCGATGTGGGACTGAAGTAGAGATTGGTCAGGA
AAACGCTCTTTACATAAATTACATTTGATCGGTTTGTagattttgagaat
ttcatCAGTCAGCATGCCAATTTTGGAACATTCAAGCACTAATACACCCT
TTTTACAAACAGTACAAAGATTCTCATCCAATTCCTATAATCTGGAACAG
GTACAATAATTTGATTCTTCTTCAAGGCGTGGGATACGTGATTGGTAGTG
AGAATGATATGCAAGCTTGAGGCTAGGAATGTGGTACGGTAGATAGAAAC
TTCTAATGAAATTTGCACGCATAAGTTGATACCACTTTCCTGATTCATCT
TGATTGATTGAACGATTGGAATTCATTTTCAATTCTTGCTTGATCGCCGA
ATGCTTTGATTCTTTTCCCTGCATTGTGAGAATACCGTAGCCTATTTTGT
AATCTTTCAAGAGTAGATTGGTGTGGTATGGAATAATATAACCCATTGTC
CAAACAGTGATATTGCAATGGGCTGGAAGAAATAGGGCGTAAATGTTAAA
ATATTGGGTGCACAATCTTTCAACGACATTTGGGTAATCAAAATTGGTGA
TATTGACTCTGTTGATTTGAGAGCCAATATCTCTCAATAGTTGTTGAATT
TTTGGTAATGCAGCTCGCCTAACAACTTCTGCCTCACTTTCATTGCTTCC
CGCAAGCACATCAACCAAGCGATATCCATGCCGAGCAAGGCAGATGGCTT
GTGATCCAACGAGACGTAACGATATGGATTTCATTTGTGTTGCAGGCTTA
TCAAAATGTTCCCTCAGTGACTTTGCAACTTGTTTCAAGCCACATCCATT
GTTAGATTTTGGCAGAGTGAGAACCTTTTCAACTTCATCAAATAAATTTC
TTCTAACAGATTCTATGTAAACAACATTGAGAAAATACTGCCAGCTATTG
ATTTCCAAATGCAAAGGATCAGGTCTTTGACGATCCGCATAAATTCCAAT
GCGGGGTTGGCCAAGTTGACGTATACCCTGACTAGCCATGAACTCTAGCT
GCTTATCGTGTTTGGAACTTTCTGCAAGACTCTTAGGCAGTGTCTTCTTG
AAATCCTCCAGTTTCCTGATTTCTGATTTTCGAGACTCTTCGGTTGGGAT
TTGCCAGTCTCCTTTTGCATAGCCAATGCTGCCACCAATCTTGGTCAAAT
CTCCTTTATGGACGTGTGCGAATGGAGATGGATAGGTTGCACCAGCTGGN
TTGTCCAAACAGTGATATTGCAATGGGCTGGAAGAAATAGGGCGTAAATG
TTAAAATATTGGGTGCACAATCTTTCAACGACATTTGGGTAATCAAAATT
GGTGATATTGACTCTGTTGATTTGAGAGCCAATATCTCTCAAT Coding sequence (CDS) from alignment at sc0001339:13782..15574 >TCONS_00035604 ID=TCONS_00035604|Name=TCONS_00035604|organism=Clytia hemisphaerica|type=CDS|length=855bp|location=Sequence derived from alignment at sc0001339:13782..15574 (Clytia hemisphaerica)
CTATAATCTGGAACAGGTACAATAATTTGATTCTTCTTCAAGGCGTGGGA
TACGTGATTGGTAGTGAGAATGATATGCAAGCTTGAGGCTAGGAATGTGG
TACGGTAGATAGAAACTTCTAATGAAATTTGCACGCATAAGTTGATACCA
CTTTCCTGATTCATCTTGATTGATTGAACGATTGGAATTCATTTTCAATT
CTTGCTTGATCGCCGAATGCTTTGATTCTTTTCCCTGCATTGTGAGAATA
CCGTAGCCTATTTTGTAATCTTTCAAGAGTAGATTGGTGTGGTATGGAAT
AATATAACCCATTGTCCAAACAGTGATATTGCAATGGGCTGGAAGAAATA
GGGCGTAAATGTTAAAATATTGGGTGCACAATCTTTCAACGACATTTGGG
TAATCAAAATTGGTGATATTGACTCTGTTGATTTGAGAGCCAATATCTCT
CAATAGTTGTTGAATTTTTGGTAATGCAGCTCGCCTAACAACTTCTGCCT
CACTTTCATTGCTTCCCGCAAGCACATCAACCAAGCGATATCCATGCCGA
GCAAGGCAGATGGCTTGTGATCCAACGAGACGTAACGATATGGATTTCAT
TTGTGTTGCAGGCTTATCAAAATGTTCCCTCAGTGACTTTGCAACTTGTT
TCAAGCCACATCCATTGTTAGATTTTGGCAGAGTGAGAACCTTTTCAACT
TCATCAAATAAATTTCTTCTAACAGATTCTATGTAAACAACATTGAGAAA
ATACTGCCAGCTATTGATTTCCAAATGCAAAGGATCAGGTCTTTGACGAT
CCGCATAAATTCCAATGCGGGGTTGGCCAAGTTGACGTATACCCTGACTA
GCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035604-exon-sc0001339-1491911889:13782..15574 | TCONS_00035604-exon-sc0001339-1491911889:13782..15574 | Clytia hemisphaerica | exon |
| TCONS_00035604-exon-sc0001339-1510915933:13782..15574 | TCONS_00035604-exon-sc0001339-1510915933:13782..15574 | Clytia hemisphaerica | exon |
| TCONS_00035604-exon-sc0001339-1575043694:13782..15574 | TCONS_00035604-exon-sc0001339-1575043694:13782..15574 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001339 | supercontig | sc0001339:13782..15574 . |
Blast
The following BLAST results are available for this feature:
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