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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035603 ID=TCONS_00035603|Name=TCONS_00035603|organism=Clytia hemisphaerica|type=transcript|length=569bp
tttaGGTGAACCAGATCTTCCTTATCAGCTGACGTCAAAGGTTGGTAAAT
GCTTTTATCGTGTGATGGGGATGAGTGAGCAAGTCCGGCAGTTCGACAAG
CACCACATGTTGTTTAAGCAATACAGATACAAAATGACCATTGTCTCAGA
GGAAATCCCTTGACTATTTAAGATCACCACGCCCAATATTCACTCTATAT
ACTATACGGCTAAGTCATGGAGAACAAGAATTTTACGCTTTTCCATCGAG
ATTCAAATGGCCTTCGCAAGGAATTCAATTTGCGAAAATGCCATGCTACG
AAGTCAAGGCTGGCAATGATTTTCAAACTCGAGCCAATCATCGTATTTCT
TACTGAGGAATTTCATGGTCCAGCAGAATTTCCCGAGAATGATGGAACGT
TCAACGTTCTAAACGATGCGATGGATGAAACATCCTTCCGGGTTCACGAC
GTTGAGTTAGGCCGAAATTCAAGTAACAGAGAACCTGTAGAAGAAGCTCC
CAAGCCTGGTGCTTTTCGTCGCTTTCAATTGAATGGGTGAgtgataattt
tctttttgtaaggTTTGGC Run BLAST on NCBI protein sequence of TCONS_00035603-protein >TCONS_00035603-protein ID=TCONS_00035603-protein|Name=TCONS_00035603-protein|organism=Clytia hemisphaerica|type=polypeptide|length=107bp
MENKNFTLFHRDSNGLRKEFNLRKCHATKSRLAMIFKLEPIIVFLTEEFH
GPAEFPENDGTFNVLNDAMDETSFRVHDVELGRNSSNREPVEEAPKPGAF
RRFQLNG Run BLAST on NCBI transcript from alignment at sc0001339:48122..50291- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035603 ID=TCONS_00035603|Name=TCONS_00035603|organism=Clytia hemisphaerica|type=transcript|length=2170bp|location=Sequence derived from alignment at sc0001339:48122..50291- (Clytia hemisphaerica)
TTTAGGTGAACCAGATCTTCCTTATCAGCTGACGTCAAAGGTTGGTAAAT
GCTTTTATCGTGTGATGGGGATGAGTGAGCAAGTCCGGCAGTTCGACAAG
CACCACATGTTGTTTAAGCAATACAGGTACGAGACTATCTACAATCAGTG
CCATAACATATTGGCACTTTTGGCTAATTTACCATTTTTCGAAAATTGAA
GTTCGAGCGAGAATGTCAATTTCGGGCCTTCAACTTTGATTTCAACGATT
ATTTCGATCCAAGAGGGATTTATTGATTTCTAGGCTATATTTCAACCCCT
ACTGGACCACTTTTGAACTTTTGGATCCTCAGATCCTAAAGGTTCTTAAG
TCTAGCGTTAATACTCTACCCTTTCGAACCTACTTTAGAGCACTTGCAAA
ACGATTGTGGTTTCAAAACACCCCGGTGGATTTCCTTTTTGTGCCAAGTA
TTTCGTCACCAATTGTAGGTGGAAATTTCGCGAACCACCAAAAAGGAGTT
TGCGCTTACCTATGAGAATCCGATTTTTTGCCGCCGCTGTTTTAAATAAT
CAATGTTCGCGTTATCTATCCCAGTGCTTAGCTATTCGAATCCGACAGAA
ATGCACAACTTTGAAATATTGATTTTCTTGCCCTTCTTTTTCCAATGCCT
AACTTTAGTCTGTTTCTTGAGAATTCTCAGGCTTGGCATATATGAAATTT
GCAAGTTTTTCGATGAAATTTATATCACGGGCTCTTCTAAAAACATACGA
CATGTCATACAAACCTGGTTCCGAAAATATTTTTAAAGAAATAAGCTATA
CAATTTATGTTGCGTTTTTTTTGGCCCACTCGGTAATTCAAAATGCTGGT
CGGTCAAATATGATATTCCGGCCCTTAAATTCTGTTACAATTATAAGGAA
GTCTTACTTTTCTTACAGGTAAGATTCTTCAAAGAACATTTGCAGCAATA
TTATCAATTCTGTCAGCAGTCAAATAATCCAAATTTACAAAGATTCTACA
AGCACCTTGGAGCAATGGGAGAAAGAATTCTTTTCCATCAATGCCCGTGA
ACCTGATTTTTCAGATATGCCTGTTGACATCAAAGACACCATGACGAGAA
GGAATAATGCAAAATCACTGATAAACCAGTGGAATATTAACTAATCGTTT
TTACTGTACTGTAGCGCATTTCAATTCAATCAATGTCAGTATGTTAGTTC
TATTTTTCCCAGCGTTTTCAGTAATTTTATCCAATTCTTAACACAAAAGT
CTATTATTTTTTACAGGCATTTCCATCATACTGAATTCTTTTGGTGTGCA
ATTATACCTGACTGTTATCGGTGACAAGAAAATTTGCGCGCACAGTGTTT
TCCAGGCAAAGACCCCTCTTAAAATATTTTAAAATGTCAATACAGAAGGG
GACGTTTCAAAATAAACCCCCGGATTAATGAAGGATTTCCTCTGATAATT
TATCTTGCATAAATTAGCTCTCAACAAATAAATCTATTTTTCTCATTGCC
AGATACAAAATGACCATTGTCTCAGAGGAAATCCCTTGACTATTTAAGAT
CACCACGCCCAATATTCACTCTATATACTATACGGCTAAGTCATGGAGAA
CAAGAATTTTACGCTTTTCCATCGAGATTCAAATGGCCTTCGCAAGGAAT
TCAATTTGCGAAAATGCCATGCTACGAAGTCAAGGCTGGCAATGATTTTC
AAAGTAAGCATATCCTTCTTTTTAATGTGTTAACTAAGACTATAAATATG
GTTTTTGCGAAATGGAGCCAAAAGTATGCGATAATAAAAACTATACTGAT
TTTGGGATTCACTATTTTGTTACATATTGCCAAAACTTTAAAATGTTTGT
TTCCAAAAGGGTTGCTGGCTTTAAACATGCATGCTAAAAAGACACTATAA
TTGTCCAAATATGTTCTCTCGTTTTCAGCTCGAGCCAATCATCGTATTTC
TTACTGAGGAATTTCATGGTCCAGCAGAATTTCCCGAGAATGATGGAACG
TTCAACGTTCTAAACGATGCGATGGATGAAACATCCTTCCGGGTTCACGA
CGTTGAGTTAGGCCGAAATTCAAGTAACAGAGAACCTGTAGAAGAAGCTC
CCAAGCCTGGTGCTTTTCGTCGCTTTCAATTGAATGGGTGAGTGATAATT
TTCTTTTTGTAAGGTTTGGC Coding sequence (CDS) from alignment at sc0001339:48122..50291- >TCONS_00035603 ID=TCONS_00035603|Name=TCONS_00035603|organism=Clytia hemisphaerica|type=CDS|length=648bp|location=Sequence derived from alignment at sc0001339:48122..50291- (Clytia hemisphaerica)
CTCGAGCCAATCATCGTATTTCTTACTGAGGAATTTCATGGTCCAGCAGA
ATTTCCCGAGAATGATGGAACGTTCAACGTTCTAAACGATGCGATGGATG
AAACATCCTTCCGGGTTCACGACGTTGAGTTAGGCCGAAATTCAAGTAAC
AGAGAACCTGTAGAAGAAGCTCCCAAGCCTGGTGCTTTTCGTCGCTTTCA
ATTGAATGGGTGAATGGAGAACAAGAATTTTACGCTTTTCCATCGAGATT
CAAATGGCCTTCGCAAGGAATTCAATTTGCGAAAATGCCATGCTACGAAG
TCAAGGCTGGCAATGATTTTCAAACTCGAGCCAATCATCGTATTTCTTAC
TGAGGAATTTCATGGTCCAGCAGAATTTCCCGAGAATGATGGAACGTTCA
ACGTTCTAAACGATGCGATGGATGAAACATCCTTCCGGGTTCACGACGTT
GAGTTAGGCCGAAATTCAAGTAACAGAGAACCTGTAGAAGAAGCTCCCAA
GCCTGGTGCTTTTCGTCGCTTTCAATTGAATGGGTGAATGGAGAACAAGA
ATTTTACGCTTTTCCATCGAGATTCAAATGGCCTTCGCAAGGAATTCAAT
TTGCGAAAATGCCATGCTACGAAGTCAAGGCTGGCAATGATTTTCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035603-exon-sc0001339-1575043694:50166..50291 | TCONS_00035603-exon-sc0001339-1575043694:50166..50291 | Clytia hemisphaerica | exon |
| TCONS_00035603-exon-sc0001339-1575043694:48589..48789 | TCONS_00035603-exon-sc0001339-1575043694:48589..48789 | Clytia hemisphaerica | exon |
| TCONS_00035603-exon-sc0001339-1575043694:48122..48363 | TCONS_00035603-exon-sc0001339-1575043694:48122..48363 | Clytia hemisphaerica | exon |
| TCONS_00035603-exon-sc0001339-1510915933:50166..50291 | TCONS_00035603-exon-sc0001339-1510915933:50166..50291 | Clytia hemisphaerica | exon |
| TCONS_00035603-exon-sc0001339-1510915933:48589..48789 | TCONS_00035603-exon-sc0001339-1510915933:48589..48789 | Clytia hemisphaerica | exon |
| TCONS_00035603-exon-sc0001339-1510915933:48122..48363 | TCONS_00035603-exon-sc0001339-1510915933:48122..48363 | Clytia hemisphaerica | exon |
| TCONS_00035603-exon-sc0001339-1491911889:50166..50291 | TCONS_00035603-exon-sc0001339-1491911889:50166..50291 | Clytia hemisphaerica | exon |
| TCONS_00035603-exon-sc0001339-1491911889:48589..48789 | TCONS_00035603-exon-sc0001339-1491911889:48589..48789 | Clytia hemisphaerica | exon |
| TCONS_00035603-exon-sc0001339-1491911889:48122..48363 | TCONS_00035603-exon-sc0001339-1491911889:48122..48363 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001339 | supercontig | sc0001339:48122..50291 - |
Blast
The following BLAST results are available for this feature:
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