TCONS_00035602 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035602
Unique NameTCONS_00035602
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length784

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035602 ID=TCONS_00035602|Name=TCONS_00035602|organism=Clytia hemisphaerica|type=transcript|length=784bp
ACAGCAAAAAGAgttgtccattttttgaaaattacattgGCGACGTATCG
ACACGGAAAAATTGATTTGCACTTGCGACAAAAAGTCCTGACAATAACAG
AACAAAATGCAAATGTAGATGCTTTGACCATCAAAGTCCGTGAGGCATTC
GGAGATGAGAACTTGATTCTCGTGCAGGCCAATGGATTGCGCTTCGAGCC
ATCCGAAGCGACTAGTGagtTGTAATATTGGAAAATAAGTTCTCGCAAAG
TATTTGCCATTCCAGAAAGAGAATTCCACCAAAACATGCCGTCTTCTTCA
AGCAGACCGACAACATCGAAAAAAAGAAGATCCAACATAGATACAGGTGA
ATTGGCTGATCTATTTGGAGAAAGATTGGCGAAGTTAGAATCTTTAAACG
TTtcaccaagtacaacatcaacaTCGAATTCAGCTGCAGCTATCAATGCT
TTCAATGATGCAGTCAATGACGCTTTCCACTGCGTTATTTGTGCAGATCT
GTCCAAGCCACCAGTATCGTTATCTTCGTGTTGTATGAGAATTGTCGGGT
GTGCGGCGTGTGTGGAACGTTGGCATGTGAATCATGCAAACTGCCCACAC
TGTGGTGTCAACGATTGCACCATTACAAGTCTACATTGCTTCGCCACTAT
GTTGGAAAAACTCGTGAACTTTAAATTTAAACGACATTGAACTTGACACA
TTTGGGACAATGCCTGATTTTGCTTTCCTcttgtatttttattttgttat
ttttctacATGAAAAACTATAACCAAGAAAGTTT
Run BLAST on NCBI

protein sequence of TCONS_00035602-protein

>TCONS_00035602-protein ID=TCONS_00035602-protein|Name=TCONS_00035602-protein|organism=Clytia hemisphaerica|type=polypeptide|length=134bp
MPSSSSRPTTSKKRRSNIDTGELADLFGERLAKLESLNVSPSTTSTSNSA
AAINAFNDAVNDAFHCVICADLSKPPVSLSSCCMRIVGCAACVERWHVNH
ANCPHCGVNDCTITSLHCFATMLEKLVNFKFKRH
Run BLAST on NCBI

transcript from alignment at sc0001339:40444..42382-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035602 ID=TCONS_00035602|Name=TCONS_00035602|organism=Clytia hemisphaerica|type=transcript|length=1939bp|location=Sequence derived from alignment at sc0001339:40444..42382- (Clytia hemisphaerica)
ACAGCAAAAAGAGTTGTCCATTTTTTGAAAATTACATTGGCGACGTATCG
ACACGGAAAAATTGGTAAGAGTGCTGCAAATTGAGATGTTTTATATTAAT
TTACAACAGTATTTATTTATTTTCCCTTTACCTTTCTTCTTTGAAAGAAA
ATTTAGCTTTTCTTAAAATTAAAGCAAACGAAAAAGGTTGGCTACTGCTT
ATAATATAATTTCAGCCTGCTAACCGTACTGGGAAGTTGTTCAGGGGGCG
TGAACCTTGATTTTCTTGTTGTCCAGTCCACTTGTTCAATAAATTTCGCA
TTCCAAAGATAAAGATGTCTACCCTGTCATAATATGAGATGATAATGGTA
TTCAAATTTTAATGATGAATTTGCATTGCTCCAAGTTATGTTAACATTCA
GCCTAACTTTTGCAGAATTTAACTTATATCGATTTCGAAATGTTTTTTCA
TAGATTTGCACTTGCGACAAAAAGTCCTGACAATAACAGAACAAAATGCA
AATGTAGATGCTTTGACCATCAAAGTCCGTGAGGCATTCGGAGATGAGAA
CTTGATTCTCGTGCAGGCCAATGGATTGCGCTTCGAGCCATCCGAAGCGA
CTAGTGGTAAGAAGTTAAAAATAAAATATGTTGTAACATTACAGAACTTG
AATCTAAATACTATTTTGAGTTTATGGAAAATATATTTACTAGTGGAATA
CAATCTTTCAAAGGAAATTCACTGACAAATTTGGTTGAAATATACAATAA
CTCCTAACACTTTCAAAAAGCATGCAAAATTACATCAATTGTTGGGGAAC
ATTCGAACATTGAATTTAAGCTACAAAATCTCCCAGAATCAAGCTCCAAA
ATGATGATTATTCTTTAAGTGAAGTTTCTTATAGGAAGCATAGGCCTGTG
AATCAGACTGGTTGATATTGCGGGTCACAATATGGGTTAATAGATTCAGA
AATTTATTTTCTTGTCCGACGAATTAGACGTTCATTAAAAAAGCGTTTTT
AGCCGACGAAGTTTAGAATTAATCATATTTTGCTGTTGTTCTAAACAATG
GTAGAGGGTCATCGATTTCAAGTGAAATATTTATTTTTCAGAGTTGTAAT
ATTGGAAAATAAGTTCTCGCAAAGTATTTGCCATTCCAGAAAGAGAATTC
CACCAAAACATGCCGTCTTCTTCAAGCAGACCGACAACATCGAAAAAAAG
AAGATCCAACATAGATACAGGTGAATTGGCTGGTAAGTTGAGTTTATTAC
TCTTATTGTTAGGAATACTCCAATTATTTTTATTTAATCGCATCAACTAC
AATGTAAACACCGTAAAATTTCCTGCGAATTTCTTTGATAATTTGAACAA
TCTACTTCTTCTACTGGCATATGATGATAACTTTTCTGACAGTTTCTGAC
AGTTTATGAATGATATCTGATCTATTGTCTATATGAGTTTATTAACAGTT
TTACAAGGGTGTACAAGGATGCGCGTAATGAACAATACAACATCGTTTTA
CATCTTATTACAGATCTATTTGGAGAAAGATTGGCGAAGTTAGAATCTTT
AAACGTTTCACCAAGTACAACATCAACATCGAATTCAGCTGCAGCTATCA
ATGCTTTCAATGATGCAGTCAATGACGCTTTCCACTGCGTTATTTGTGCA
GATCTGTCCAAGCCACCAGTATCGTTATCTTCGTGTTGTATGAGAATTGT
CGGGTGTGCGGCGTGTGTGGAACGTTGGCATGTGAATCATGCAAACTGCC
CACACTGTGGTGTCAACGATTGCACCATTACAAGTCTACATTGCTTCGCC
ACTATGTTGGAAAAACTCGTGAACTTTAAATTTAAACGACATTGAACTTG
ACACATTTGGGACAATGCCTGATTTTGCTTTCCTCTTGTATTTTTATTTT
GTTATTTTTCTACATGAAAAACTATAACCAAGAAAGTTT

Coding sequence (CDS) from alignment at sc0001339:40444..42382-

>TCONS_00035602 ID=TCONS_00035602|Name=TCONS_00035602|organism=Clytia hemisphaerica|type=CDS|length=810bp|location=Sequence derived from alignment at sc0001339:40444..42382- (Clytia hemisphaerica)
ATCTATTTGGAGAAAGATTGGCGAAGTTAGAATCTTTAAACGTTTCACCA
AGTACAACATCAACATCGAATTCAGCTGCAGCTATCAATGCTTTCAATGA
TGCAGTCAATGACGCTTTCCACTGCGTTATTTGTGCAGATCTGTCCAAGC
CACCAGTATCGTTATCTTCGTGTTGTATGAGAATTGTCGGGTGTGCGGCG
TGTGTGGAACGTTGGCATGTGAATCATGCAAACTGCCCACACTGTGGTGT
CAACGATTGCACCATTACAAGTCTACATTGCTTCGCCACTATGTTGGAAA
AACTCGTGAACTTTAAATTTAAACGACATTGAATGCCGTCTTCTTCAAGC
AGACCGACAACATCGAAAAAAAGAAGATCCAACATAGATACAGGTGAATT
GGCTGATCTATTTGGAGAAAGATTGGCGAAGTTAGAATCTTTAAACGTTT
CACCAAGTACAACATCAACATCGAATTCAGCTGCAGCTATCAATGCTTTC
AATGATGCAGTCAATGACGCTTTCCACTGCGTTATTTGTGCAGATCTGTC
CAAGCCACCAGTATCGTTATCTTCGTGTTGTATGAGAATTGTCGGGTGTG
CGGCGTGTGTGGAACGTTGGCATGTGAATCATGCAAACTGCCCACACTGT
GGTGTCAACGATTGCACCATTACAAGTCTACATTGCTTCGCCACTATGTT
GGAAAAACTCGTGAACTTTAAATTTAAACGACATTGAATGCCGTCTTCTT
CAAGCAGACCGACAACATCGAAAAAAAGAAGATCCAACATAGATACAGGT
GAATTGGCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020850XLOC_020850Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035602-proteinTCONS_00035602-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035602-exon-sc0001339-1575043694:42319..42382TCONS_00035602-exon-sc0001339-1575043694:42319..42382Clytia hemisphaericaexon
TCONS_00035602-exon-sc0001339-1575043694:41777..41929TCONS_00035602-exon-sc0001339-1575043694:41777..41929Clytia hemisphaericaexon
TCONS_00035602-exon-sc0001339-1575043694:41151..41291TCONS_00035602-exon-sc0001339-1575043694:41151..41291Clytia hemisphaericaexon
TCONS_00035602-exon-sc0001339-1575043694:40444..40869TCONS_00035602-exon-sc0001339-1575043694:40444..40869Clytia hemisphaericaexon
TCONS_00035602-exon-sc0001339-1510915933:42319..42382TCONS_00035602-exon-sc0001339-1510915933:42319..42382Clytia hemisphaericaexon
TCONS_00035602-exon-sc0001339-1510915933:41777..41929TCONS_00035602-exon-sc0001339-1510915933:41777..41929Clytia hemisphaericaexon
TCONS_00035602-exon-sc0001339-1510915933:41151..41291TCONS_00035602-exon-sc0001339-1510915933:41151..41291Clytia hemisphaericaexon
TCONS_00035602-exon-sc0001339-1510915933:40444..40869TCONS_00035602-exon-sc0001339-1510915933:40444..40869Clytia hemisphaericaexon
TCONS_00035602-exon-sc0001339-1491911889:42319..42382TCONS_00035602-exon-sc0001339-1491911889:42319..42382Clytia hemisphaericaexon
TCONS_00035602-exon-sc0001339-1491911889:41777..41929TCONS_00035602-exon-sc0001339-1491911889:41777..41929Clytia hemisphaericaexon
TCONS_00035602-exon-sc0001339-1491911889:41151..41291TCONS_00035602-exon-sc0001339-1491911889:41151..41291Clytia hemisphaericaexon
TCONS_00035602-exon-sc0001339-1491911889:40444..40869TCONS_00035602-exon-sc0001339-1491911889:40444..40869Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001339supercontigsc0001339:40444..42382 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.740405	0.902514	0.279442	0.0683475	0.915271	1.44652	1.34854	1.70806	1.09187	0.772832	1.62528	1.39713	1.84658	1.15061	3.50355	7.21891	2.21891	2.23131	1.57413	1.92175	0.715866	0.960229	0.424467	0.578853	0.728695	1.47805	0.423018	0.451456	0.205448	0.348865
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035602 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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