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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035597 ID=TCONS_00035597|Name=TCONS_00035597|organism=Clytia hemisphaerica|type=transcript|length=918bp
NGGGTCGAAGTCACTGTTGTTTTGCAGCATTTTCCTTCTCTTTTTGCTCA
GCTAGCCATTCACTGTACGGTTGGGACATTGTGTTTGGACACCATCTTTT
TCCTTTGTACCAGCCGTGAGTGCCTTTCACCTGTTGCTTGCACATCTGGC
ATGTATGAGGCTTACGGGTTTTGGCTGGTTCCGGTGCAAGGGTCGGTGGT
ATGTTGGGTCGCAGAGTTGTCGAAGCTGAATTGAAGGGTGATGCCATACG
GTGAAACAATGGATGTAGGCTTGGTTGTGAATGGTAAAGAGGTGACGTTT
GTTGGTAAGGGTTTGACTGTGATTGTTGGAAAGGATTTGGTGCTTGGTAG
ATGTTTGGATAAACTGGCGTGGGAAAAGGAACAAATCGAGGCCGTGGTTG
TGCAGAAAATCGAACTTGTGGGATGCTTGGCGGAGCGAAGTATGATGAGA
TGGACtctcgttgttgttgttgttgttgttgttgaggtCGTTGAGTTGGT
GGCCTTGATTGGGTTGTAGATTCAGCAGGTCTCTTCCGTTTTCGAAATTT
GAGCAATCCGGATCGATTTTGTGGTTCGGGAAACGTTGCCGGGGGTAGTG
AGCTTTCGACAATCTGGTGGCCTGCTGTTTCCGGTAGATTTGAAGAAACA
GTCACTTCGCCTGGCGGGTCTCTACCCTGCATTAAATTGACGATCGATTC
GGCTCTTGCCTTGTCTTTCTCCCAGATTCGTAGCGTGTGCTGGTTTATGC
AAAAGAGCGTCATTGATGTTTCTTGATACACGGTGCTGTGGTAGATTCTC
GACCGGATGTTGTTGTACTGTCTCACAATCCGCTGCCATCGTGATTCAAA
TTCGCATTGCCCGTTGACTGATTTGTTGCTATTCGTGGTGATCTCGTTGC
AAAGATAGATGCATATCG Run BLAST on NCBI protein sequence of TCONS_00035597-protein >TCONS_00035597-protein ID=TCONS_00035597-protein|Name=TCONS_00035597-protein|organism=Clytia hemisphaerica|type=polypeptide|length=301bp
ICIYLCNEITTNSNKSVNGQCEFESRWQRIVRQYNNIRSRIYHSTVYQET
SMTLFCINQHTLRIWEKDKARAESIVNLMQGRDPPGEVTVSSNLPETAGH
QIVESSLPPATFPEPQNRSGLLKFRKRKRPAESTTQSRPPTQRPQQQQQQ
QQRESISSYFAPPSIPQVRFSAQPRPRFVPFPTPVYPNIYQAPNPFQQSQ
SNPYQQTSPLYHSQPSLHPLFHRMASPFNSASTTLRPNIPPTLAPEPAKT
RKPHTCQMCKQQVKGTHGWYKGKRWCPNTMSQPYSEWLAEQKEKENAAKQ
Q Run BLAST on NCBI transcript from alignment at sc0001335:56933..57850 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035597 ID=TCONS_00035597|Name=TCONS_00035597|organism=Clytia hemisphaerica|type=transcript|length=918bp|location=Sequence derived from alignment at sc0001335:56933..57850 (Clytia hemisphaerica)
CGATATGCATCTATCTTTGCAACGAGATCACCACGAATAGCAACAAATCA
GTCAACGGGCAATGCGAATTTGAATCACGATGGCAGCGGATTGTGAGACA
GTACAACAACATCCGGTCGAGAATCTACCACAGCACCGTGTATCAAGAAA
CATCAATGACGCTCTTTTGCATAAACCAGCACACGCTACGAATCTGGGAG
AAAGACAAGGCAAGAGCCGAATCGATCGTCAATTTAATGCAGGGTAGAGA
CCCGCCAGGCGAAGTGACTGTTTCTTCAAATCTACCGGAAACAGCAGGCC
ACCAGATTGTCGAAAGCTCACTACCCCCGGCAACGTTTCCCGAACCACAA
AATCGATCCGGATTGCTCAAATTTCGAAAACGGAAGAGACCTGCTGAATC
TACAACCCAATCAAGGCCACCAACTCAACGacctcaacaacaacaacaac
aacaacaacgagaGTCCATCTCATCATACTTCGCTCCGCCAAGCATCCCA
CAAGTTCGATTTTCTGCACAACCACGGCCTCGATTTGTTCCTTTTCCCAC
GCCAGTTTATCCAAACATCTACCAAGCACCAAATCCTTTCCAACAATCAC
AGTCAAACCCTTACCAACAAACGTCACCTCTTTACCATTCACAACCAAGC
CTACATCCATTGTTTCACCGTATGGCATCACCCTTCAATTCAGCTTCGAC
AACTCTGCGACCCAACATACCACCGACCCTTGCACCGGAACCAGCCAAAA
CCCGTAAGCCTCATACATGCCAGATGTGCAAGCAACAGGTGAAAGGCACT
CACGGCTGGTACAAAGGAAAAAGATGGTGTCCAAACACAATGTCCCAACC
GTACAGTGAATGGCTAGCTGAGCAAAAAGAGAAGGAAAATGCTGCAAAAC
AACAGTGACTTCGACCCN Coding sequence (CDS) from alignment at sc0001335:56933..57850 >TCONS_00035597 ID=TCONS_00035597|Name=TCONS_00035597|organism=Clytia hemisphaerica|type=CDS|length=906bp|location=Sequence derived from alignment at sc0001335:56933..57850 (Clytia hemisphaerica)
ATATGCATCTATCTTTGCAACGAGATCACCACGAATAGCAACAAATCAGT
CAACGGGCAATGCGAATTTGAATCACGATGGCAGCGGATTGTGAGACAGT
ACAACAACATCCGGTCGAGAATCTACCACAGCACCGTGTATCAAGAAACA
TCAATGACGCTCTTTTGCATAAACCAGCACACGCTACGAATCTGGGAGAA
AGACAAGGCAAGAGCCGAATCGATCGTCAATTTAATGCAGGGTAGAGACC
CGCCAGGCGAAGTGACTGTTTCTTCAAATCTACCGGAAACAGCAGGCCAC
CAGATTGTCGAAAGCTCACTACCCCCGGCAACGTTTCCCGAACCACAAAA
TCGATCCGGATTGCTCAAATTTCGAAAACGGAAGAGACCTGCTGAATCTA
CAACCCAATCAAGGCCACCAACTCAACGacctcaacaacaacaacaacaa
caacaacgagaGTCCATCTCATCATACTTCGCTCCGCCAAGCATCCCACA
AGTTCGATTTTCTGCACAACCACGGCCTCGATTTGTTCCTTTTCCCACGC
CAGTTTATCCAAACATCTACCAAGCACCAAATCCTTTCCAACAATCACAG
TCAAACCCTTACCAACAAACGTCACCTCTTTACCATTCACAACCAAGCCT
ACATCCATTGTTTCACCGTATGGCATCACCCTTCAATTCAGCTTCGACAA
CTCTGCGACCCAACATACCACCGACCCTTGCACCGGAACCAGCCAAAACC
CGTAAGCCTCATACATGCCAGATGTGCAAGCAACAGGTGAAAGGCACTCA
CGGCTGGTACAAAGGAAAAAGATGGTGTCCAAACACAATGTCCCAACCGT
ACAGTGAATGGCTAGCTGAGCAAAAAGAGAAGGAAAATGCTGCAAAACAA
CAGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035597-exon-sc0001335-1491911889:56933..57850 | TCONS_00035597-exon-sc0001335-1491911889:56933..57850 | Clytia hemisphaerica | exon |
| TCONS_00035597-exon-sc0001335-1510915933:56933..57850 | TCONS_00035597-exon-sc0001335-1510915933:56933..57850 | Clytia hemisphaerica | exon |
| TCONS_00035597-exon-sc0001335-1575043694:56933..57850 | TCONS_00035597-exon-sc0001335-1575043694:56933..57850 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001335 | supercontig | sc0001335:56933..57850 . |
Blast
The following BLAST results are available for this feature:
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