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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035587 ID=TCONS_00035587|Name=TCONS_00035587|organism=Clytia hemisphaerica|type=transcript|length=4769bp
AAAAAATACTCTGGGAGTATTTATTTCCGGGAAATACTTACTCCGGGAGT
ACTTTTGTTCAGGGAGTACTTATTTTCTGCTACACCGGTATATTGACAGA
GCAAGTATCGCAATTTATTACTGAACTTGGATTAATAAGAGAATTCAATA
CACAGTTCGGCCATGAACTTGCATCAATCATAATCTCTGGATACATAATT
TCTGAAAGGATACTAACAATGTTACCTGTTTCTCTCCGTTCTTTTTCACA
ACTGCAACTATTACATGTACCTTGAATTACATAGCTTACTTCAAAAATGT
GTCTCTCTCTTTCTGATAAGTTCTTGAAAATATTACTTCCAAAAATCTCT
TGAAACTCTGCGTCACTATTTCTTTTTCTAAACGTACCACAATTTTCAAT
GATCCTTGACCATAGTGGTTCTCTAATTTCATCCAGAAGTCGAAATGCAT
TACTTTTCATATCGTCACTTTCAAATGGAATTTCCATTGATCCACTTATT
TGAAGCAAATTGAAAAAGTCACTTGAttcttcaaaatatattttagcTTT
TATTTCTGGGAGAAGCAAGCGGTAACTAATTTCAAGAAAACAGTCAACCG
CACAAGAATAGGTACGTCCACGAGTTGATCTGCTAGAATTTCGGAAATGC
GCAACACTCAATGCAGTGtctaaatcaattaaaaaatcCTCCTCTTCCAT
GACtgggaaaaatttttaaatttcttatgtAGTAGCAGAGACAGTAATAT
TGACcagtctttttcaaatttttgagcagAACGCAGTTGTTTATAATTTC
CCTTTTATCGGGCTTCCCCTTTTATCGGGCTTCCCCTTTTATCGGGCTTC
CCCTTTTATCGGACTTTCCCTTTTATCTCAAGCTCTGTTTTATACTTGTA
GTTCAGTTTCAGTAATTCCTTTACTTTAATTCCTTGTACTTTCAATCAGC
TTGAGGGTGCTACTCAAACTGGGTTTGACAGTGTTTATCCCAGCACTGAG
TTCCCTCTCAGAACTGTGGCAGTTTGAACGTGCTGAACAAACTGTTTGGC
CGAAAAATAAATCAAtctgaatgtctaagacaggagacagattgtatAAT
Tggactgtcagcaaattcactggtttatatatcaatttttgtaaaaaagt
aaTGCAATTTGACTGCAAGAGACCTTTGTATAGAGAACCAAGAGATTTGA
AAATCCAAGATGTCTGCCAGCAAACCAAAAACGTGCTCACAAAATTATCT
ACACAATTTCCCCACTCTAAAAAAAAGGCCAATCAGGTTGCGAGTACTCA
AACATGGCGGCGTTTAACGCAATTGGATTTGTCAATGAAATCTTAataga
ccaatcaaatcacGTTATTTTCCCAGAATCTATATAGAGATCAGTCAGTA
TGTTTCTTCGCCGTCCCgctaaaaaaacatgaaaaaacgTCCGCCACGCG
TGCCAAAAAAGAACCGCTTTATTGTTAGTTAAAGCTAACCGGGCATCAAA
CTTTACGGAGCATTATATATTAGCCGGAACATACAATACGAACAAACAAA
cgcaaaaattcgagattcctgtccaatatcttgcgtgaagctatgactgc
ctcctcactcgctgcgctcgttgcgggggcaaaaaaAGGACATCATTTAG
CGgatctcctaccatttgcttacacagcatttttaaacgaAGGAAAAAAG
ACTTACTCCTCCTgtgttttgaggaaattttattgttaagtCTGCTTTAT
CAGCATAAAAGAGATACGTGTCCCTTCTATATCaaaggatttttttaaat
aatatccATGATCAAACATCGGACAACTTCAAGCCAATTAAAAAGAATTG
ATTTAAATGTTAGCAAGCGTGAACATTCTTTGagcatattttgaaaatta
gcaTTGTTATGCGCACATGCTCCTTAAGAAAATCTACAGGATGCCTTTGA
ATTTGAACCCAAAAACTATTGTCTGTGgttttattctcaacttcagtcga
gctagaatctgagaatgtcagTCTGTCAGTCTTTCTGTTTATCCGCTCAA
ACTTTTATGCAGGCTGTAGACTTAGGGAAGTGGTCTTAGCCCCAAAGCGA
GGCTAAAATATTTGGGACAACCTGGAGACTTCAAAAATGGTCTGACTTGA
AATTGTTTCTAAAGCAATTTTACAATTTGGCCTGCAATTGACTTTAAAGA
TATTGAAGTTGAGCCAGTGCGGTTAGCATCAGGAAAATCAAAATGATTTG
GATTTGGCTATAGCCGTCATTATGCAATGTAAAGCCATCCGTCTTGTAAC
TATTTCCACCTTTCCATGCTATATAATAAGAGATGACCTTATCTAATTTT
TTTGCTGATATAACAGAGGCTCTTTAACTCGAACCTGTATTAATCCAATG
TGTTCTTAACTGAAACAAAGTTTTTTCTTCCCTTCAGTTAACAATGTTTT
ATAAACCATACTCCACCACTCGAAATTTCCTCAACACGAACAAAGTTGTG
TTCTACGTGCGGGTTTGAGTTATGGAGACTCCGCTGATTCTTGATATGCG
TAAGTCAAGATGACGTCATATTTTTTAACGGAAGCACTCGAAAAAGCAGG
ATTTTGACCTCTGTGTTTCTATTTTTAGTAACAGAGAGAGATCAAATCCT
GGATTTTTTCGGGTGTTTCCGTTAGAAAAATGACTTACGCATATCAAGAA
TAGTGACACTGATTACAACATTTTAACCAACAGGTGCCAGGTCCACGACA
GTATTATTGTATTGACCGTAAAAAATCTGATGGATATTTTATATTTTTTG
TCTTTTTTCACTTGCAGCAAAAATGAATGGGAACAGTGGGCATGTAAATG
AAGAAATCTCTCCACTTTCTGAAAGTTTGAAGAAATTACAAGAAATCAAT
GAAGAAATTCGAAGATTGAGGAGTTTAAGTTATAAAGAAAATGTGGATCA
GGTAAGGACTCTTTTTCAATATTCTTTTTGGGATGACATATTCTCTAAAT
GGGTTGTCCATCTGGGTCTTTTGATGCGGGGGTCAATTCTTGGAGCTGAA
GGAGTCATATTATGGGTTTCCAAGTCATTCTGCGCTCTAACTTTCTTACA
GTTACAAAAATATTTTAAAAATTGAACCCTAAGGCTCGATTTCCTGCAAT
GATTTTACGAATCAAGATGGAGTCAATTCTCTTTAATCAGAGGCTCTACG
ATTCGAATTTTTCTGTGATTTAAACTAAAAAAAATGGTCCTCTCATCTCA
AAATACAGTACTCTTCGTGATTCGATAATGTTACGTCAATGATTTTACGA
ATCAAGATGGAGTCAATTCTCTTTAATCAGAGGCTCTACGATTCGAATTT
TCCTGTGATTTAAACTAAAAAAATGGTCCTCTCATCTCAAAGTACAGTAC
TCTTCGTGATTCGATAATGTTACGTTAATGATTTTACGAATCAAGATGGA
TTCAATTTTTTTTAATCAGAGGCTCTACGATTCGAATTTTTCTGTGATTT
AAACTAAAAAAAATGGTCCTCTCATCTCAAAGTACAGTACTCTTCGTGAT
TCGATAATGTTACGTCAATGATTTTACGAATCAAGATGGATTCAATTTTT
TTTAATCAGAGGCTCTACGATTCGAATTTTTCTGTGATTCAAACTAAAAA
AAATGGTCCTCTCATCTCAAAGTACAGTACTCTTCGTGATTCGATAATGT
TACGTCGACGATTTTATGAATGCGATTTTTGTATTTTTAATCGACTGAAG
TACTTGCAAACACTCGGGCGTTTATCGGATTAGATCTCTCTCCATCCAAA
TACTTTGAGTGTTGTTTTTCTTATACTAAAAATATTGCCGACTTTGTTTA
AACGATAGATAGAGAAATTCCGAGAATAGGCCTTTATAATTcattttgag
tgcaacgactgcctcgttttgaagttATTACAGGTGATTAGATACCTCGC
GTCTACAAAGTGTTACTTCATACGAACTTCTCTGGGGCTTGATTTACTAT
AGCAATATTCTGAAAAACGAGaagcgttgctcgtgacgtatTTTATGATA
AGGTTTTgccgttgacaaatcaaaagggTTAATCACAAAATTAGTATCTG
AGAAAGCTAAGAGTTTTTCTGTCTAGCCAGGTCTAGCTAGCCTTAAATTT
GAGATTGGCCCATTTTGCATAGTCAGGAGGGTCTCATCTACATGAAACag
ggtcaatctcaaaatttatgctCAGACAAACAGAAAAATTTATAGTTTTC
TCAGgcaataattttgagattggaccttttgatttgtcaacggcGATTTG
AATCATCAGCCTTCCCCGTGagttttcgagttatggagactccactataT
GTGAAAAACTAGCTTTTGCCGCTGGCCCTCGACTGCAGTCGCAAAATTTG
TAAGCAAGCAGCTCGgattcttattttttgacgtCCGGTCGCTATTGTGT
CACATATATCAACCTCGCAAGTCATTTTGTTTTTAGCACAAACCACATTG
ACATAAttctagaaaaatcaaaaactgacCAAAACAGACATGGGAACAAA
GTGACTATTTCAGACATAGACGGTCCTTGTTCGGTAAGACACGTTCTTAA
CGATTACCTTTTAAAGGCGAAGCTGAAAGACGACACAGAGGCatacattt
tttgtaaaatggtTAAAACAAAGGAAGGTCATAAAGCGGTAGGAAGACAC
AAAATCAGTTATAGCACGGCAAGGAAAGAATTTCTCAGTTTGCTGAGTTC
AGTTTTACCAGAGTCAGNN Run BLAST on NCBI transcript from alignment at sc0001335:64188..69097- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035587 ID=TCONS_00035587|Name=TCONS_00035587|organism=Clytia hemisphaerica|type=transcript|length=4910bp|location=Sequence derived from alignment at sc0001335:64188..69097- (Clytia hemisphaerica)
AAAAAATACTCTGGGAGTATTTATTTCCGGGAAATACTTACTCCGGGAGT
ACTTTTGTTCAGGGAGTACTTATTTTCTGCTACACCGGTATATTGACAGA
GCAAGTATCGCAATTTATTACTGAACTTGGATTAATAAGAGAATTCAATA
CACAGTTCGGCCATGAACTTGCATCAATCATAATCTCTGGATACATAATT
TCTGAAAGGATACTAACAATGTTACCTGTTTCTCTCCGTTCTTTTTCACA
ACTGCAACTATTACATGTACCTTGAATTACATAGCTTACTTCAAAAATGT
GTCTCTCTCTTTCTGATAAGTTCTTGAAAATATTACTTCCAAAAATCTCT
TGAAACTCTGCGTCACTATTTCTTTTTCTAAACGTACCACAATTTTCAAT
GATCCTTGACCATAGTGGTTCTCTAATTTCATCCAGAAGTCGAAATGCAT
TACTTTTCATATCGTCACTTTCAAATGGAATTTCCATTGATCCACTTATT
TGAAGCAAATTGAAAAAGTCACTTGATTCTTCAAAATATATTTTAGCTTT
TATTTCTGGGAGAAGCAAGCGGTAACTAATTTCAAGAAAACAGTCAACCG
CACAAGAATAGGTACGTCCACGAGTTGATCTGCTAGAATTTCGGAAATGC
GCAACACTCAATGCAGTGTCTAAATCAATTAAAAAATCCTCCTCTTCCAT
GACTGGGAAAAATTTTTAAATTTCTTATGTAGTAGCAGAGACAGTAATAT
TGACCAGTCTTTTTCAAATTTTTGAGCAGAACGCAGTTGTTTATAATTTC
CCTTTTATCGGGCTTCCCCTTTTATCGGGCTTCCCCTTTTATCGGGCTTC
CCCTTTTATCGGACTTTCCCTTTTATCTCAAGCTCTGTTTTATACTTGTA
GTTCAGTTTCAGTAATTCCTTTACTTTAATTCCTTGTACTTTCAATCAGC
TTGAGGGTGCTACTCAAACTGGGTTTGACAGTGTTTATCCCAGCACTGAG
TTCCCTCTCAGAACTGTGGCAGTTTGAACGTGCTGAACAAACTGTTTGGC
CGAAAAATAAATCAATCTGAATGTCTAAGACAGGAGACAGATTGTATAAT
TGGACTGTCAGCAAATTCACTGGTTTATATATCAATTTTTGTAAAAAAGT
AATGCAATTTGACTGCAAGAGACCTTTGTATAGAGAACCAAGAGATTTGA
AAATCCAAGATGTCTGCCAGCAAACCAAAAACGTGCTCACAAAATTATCT
ACACAATTTCCCCACTCTAAAAAAAAGGCCAATCAGGTTGCGAGTACTCA
AACATGGCGGCGTTTAACGCAATTGGATTTGTCAATGAAATCTTAATAGA
CCAATCAAATCACGTTATTTTCCCAGAATCTATATAGAGATCAGTCAGTA
TGTTTCTTCGCCGTCCCGCTAAAAAAACATGAAAAAACGTCCGCCACGCG
TGCCAAAAAAGAACCGCTTTATTGTTAGTTAAAGCTAACCGGGCATCAAA
CTTTACGGAGCATTATATATTAGCCGGAACATACAATACGAACAAACAAA
CGCAAAAATTCGAGATTCCTGTCCAATATCTTGCGTGAAGCTATGACTGC
CTCCTCACTCGCTGCGCTCGTTGCGGGGGCAAAAAAAGGACATCATTTAG
CGGATCTCCTACCATTTGCTTACACAGCATTTTTAAACGAAGGAAAAAAG
ACTTACTCCTCCTGTGTTTTGAGGAAATTTTATTGTTAAGTCTGCTTTAT
CAGCATAAAAGAGATACGTGTCCCTTCTATATCAAAGGATTTTTTTAAAT
AATATCCATGATCAAACATCGGACAACTTCAAGCCAATTAAAAAGAATTG
ATTTAAATGTTAGCAAGCGTGAACATTCTTTGAGCATATTTTGAAAATTA
GCATTGTTATGCGCACATGCTCCTTAAGAAAATCTACAGGATGCCTTTGA
ATTTGAACCCAAAAACTATTGTCTGTGGTTTTATTCTCAACTTCAGTCGA
GCTAGAATCTGAGAATGTCAGTCTGTCAGTCTTTCTGTTTATCCGCTCAA
ACTTTTATGCAGGCTGTAGACTTAGGGAAGTGGTCTTAGCCCCAAAGCGA
GGCTAAAATATTTGGGACAACCTGGAGACTTCAAAAATGGTCTGACTTGA
AATTGTTTCTAAAGCAATTTTACAATTTGGCCTGCAATTGACTTTAAAGA
TATTGAAGTTGAGCCAGTGCGGTTAGCATCAGGAAAATCAAAATGATTTG
GATTTGGCTATAGCCGTCATTATGCAATGTAAAGCCATCCGTCTTGTAAC
TATTTCCACCTTTCCATGCTATATAATAAGAGATGACCTTATCTAATTTT
TTTGCTGATATAACAGAGGCTCTTTAACTCGAACCTGTATTAATCCAATG
TGTTCTTAACTGAAACAAAGTTTTTTCTTCCCTTCAGTTAACAATGTTTT
ATAAACCATACTCCACCACTCGAAATTTCCTCAACACGAACAAAGTTGTG
TTCTACGTGCGGGTTTGAGTTATGGAGACTCCGCTGATTCTTGATATGCG
TAAGTCAAGATGACGTCATATTTTTTAACGGAAGCACTCGAAAAAGCAGG
ATTTTGACCTCTGTGTTTCTATTTTTAGTAACAGAGAGAGATCAAATCCT
GGATTTTTTCGGGTGTTTCCGTTAGAAAAATGACTTACGCATATCAAGAA
TAGTGACACTGATTACAACATTTTAACCAACAGGTGCCAGGTCCACGACA
GTATTATTGTATTGACCGTAAAAAATCTGATGGATATTTTATATTTTTTG
TCTTTTTTCACTTGCAGCAAAAATGAATGGGAACAGTGGGCATGTAAATG
AAGAAATCTCTCCACTTTGTAAGTAATATTGTGTTTTTTTAATTATTTGC
AAAGCTACTCTGTAAGATGTAGCCAAGAAATTCCATTTTCTCTTTTCGGG
CTCTATGTTTTTTCTCTTCCAACTTCAAACTTCTACAACTGTTTGTTGTT
TTTTTTTAGCTGAAAGTTTGAAGAAATTACAAGAAATCAATGAAGAAATT
CGAAGATTGAGGAGTTTAAGTTATAAAGAAAATGTGGATCAGGTAAGGAC
TCTTTTTCAATATTCTTTTTGGGATGACATATTCTCTAAATGGGTTGTCC
ATCTGGGTCTTTTGATGCGGGGGTCAATTCTTGGAGCTGAAGGAGTCATA
TTATGGGTTTCCAAGTCATTCTGCGCTCTAACTTTCTTACAGTTACAAAA
ATATTTTAAAAATTGAACCCTAAGGCTCGATTTCCTGCAATGATTTTACG
AATCAAGATGGAGTCAATTCTCTTTAATCAGAGGCTCTACGATTCGAATT
TTTCTGTGATTTAAACTAAAAAAAATGGTCCTCTCATCTCAAAATACAGT
ACTCTTCGTGATTCGATAATGTTACGTCAATGATTTTACGAATCAAGATG
GAGTCAATTCTCTTTAATCAGAGGCTCTACGATTCGAATTTTCCTGTGAT
TTAAACTAAAAAAATGGTCCTCTCATCTCAAAGTACAGTACTCTTCGTGA
TTCGATAATGTTACGTTAATGATTTTACGAATCAAGATGGATTCAATTTT
TTTTAATCAGAGGCTCTACGATTCGAATTTTTCTGTGATTTAAACTAAAA
AAAATGGTCCTCTCATCTCAAAGTACAGTACTCTTCGTGATTCGATAATG
TTACGTCAATGATTTTACGAATCAAGATGGATTCAATTTTTTTTAATCAG
AGGCTCTACGATTCGAATTTTTCTGTGATTCAAACTAAAAAAAATGGTCC
TCTCATCTCAAAGTACAGTACTCTTCGTGATTCGATAATGTTACGTCGAC
GATTTTATGAATGCGATTTTTGTATTTTTAATCGACTGAAGTACTTGCAA
ACACTCGGGCGTTTATCGGATTAGATCTCTCTCCATCCAAATACTTTGAG
TGTTGTTTTTCTTATACTAAAAATATTGCCGACTTTGTTTAAACGATAGA
TAGAGAAATTCCGAGAATAGGCCTTTATAATTCATTTTGAGTGCAACGAC
TGCCTCGTTTTGAAGTTATTACAGGTGATTAGATACCTCGCGTCTACAAA
GTGTTACTTCATACGAACTTCTCTGGGGCTTGATTTACTATAGCAATATT
CTGAAAAACGAGAAGCGTTGCTCGTGACGTATTTTATGATAAGGTTTTGC
CGTTGACAAATCAAAAGGGTTAATCACAAAATTAGTATCTGAGAAAGCTA
AGAGTTTTTCTGTCTAGCCAGGTCTAGCTAGCCTTAAATTTGAGATTGGC
CCATTTTGCATAGTCAGGAGGGTCTCATCTACATGAAACAGGGTCAATCT
CAAAATTTATGCTCAGACAAACAGAAAAATTTATAGTTTTCTCAGGCAAT
AATTTTGAGATTGGACCTTTTGATTTGTCAACGGCGATTTGAATCATCAG
CCTTCCCCGTGAGTTTTCGAGTTATGGAGACTCCACTATATGTGAAAAAC
TAGCTTTTGCCGCTGGCCCTCGACTGCAGTCGCAAAATTTGTAAGCAAGC
AGCTCGGATTCTTATTTTTTGACGTCCGGTCGCTATTGTGTCACATATAT
CAACCTCGCAAGTCATTTTGTTTTTAGCACAAACCACATTGACATAATTC
TAGAAAAATCAAAAACTGACCAAAACAGACATGGGAACAAAGTGACTATT
TCAGACATAGACGGTCCTTGTTCGGTAAGACACGTTCTTAACGATTACCT
TTTAAAGGCGAAGCTGAAAGACGACACAGAGGCATACATTTTTTGTAAAA
TGGTTAAAACAAAGGAAGGTCATAAAGCGGTAGGAAGACACAAAATCAGT
TATAGCACGGCAAGGAAAGAATTTCTCAGTTTGCTGAGTTCAGTTTTACC
AGAGTCAGNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035587-exon-sc0001335-1575043694:66230..69097 | TCONS_00035587-exon-sc0001335-1575043694:66230..69097 | Clytia hemisphaerica | exon |
| TCONS_00035587-exon-sc0001335-1575043694:64188..66088 | TCONS_00035587-exon-sc0001335-1575043694:64188..66088 | Clytia hemisphaerica | exon |
| TCONS_00035587-exon-sc0001335-1510915933:66230..69097 | TCONS_00035587-exon-sc0001335-1510915933:66230..69097 | Clytia hemisphaerica | exon |
| TCONS_00035587-exon-sc0001335-1510915933:64188..66088 | TCONS_00035587-exon-sc0001335-1510915933:64188..66088 | Clytia hemisphaerica | exon |
| TCONS_00035587-exon-sc0001335-1491911889:66230..69097 | TCONS_00035587-exon-sc0001335-1491911889:66230..69097 | Clytia hemisphaerica | exon |
| TCONS_00035587-exon-sc0001335-1491911889:64188..66088 | TCONS_00035587-exon-sc0001335-1491911889:64188..66088 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001335 | supercontig | sc0001335:64188..69097 - |
Blast
The following BLAST results are available for this feature:
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