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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035586 ID=TCONS_00035586|Name=TCONS_00035586|organism=Clytia hemisphaerica|type=transcript|length=4458bp
CGGGAGTACTTTTGTTCAGGGAGTACTTATTTTCTGCTACACCGGTATAT
TGACAGAGCAAGTATCGCAATTTATTACTGAACTTGGATTAATAAGAGAA
TTCAATACACAGTTCGGCCATGAACTTGCATCAATCATAATCTCTGGATA
CATAATTTCTGAAAGGATACTAACAATGTTACCTGTTTCTCTCCGTTCTT
TTTCACAACTGCAACTATTACATGTACCTTGAATTACATAGCTTACTTCA
AAAATGTGTCTCTCTCTTTCTGATAAGTTCTTGAAAATATTACTTCCAAA
AATCTCTTGAAACTCTGCGTCACTATTTCTTTTTCTAAACGTACCACAAT
TTTCAATGATCCTTGACCATAGTGGTTCTCTAATTTCATCCAGAAGTCGA
AATGCATTACTTTTCATATCGTCACTTTCAAATGGAATTTCCATTGATCC
ACTTATTTGAAGCAAATTGAAAAAGTCACTTGAttcttcaaaatatattt
tagcTTTTATTTCTGGGAGAAGCAAGCGGTAACTAATTTCAAGAAAACAG
TCAACCGCACAAGAATAGGTACGTCCACGAGTTGATCTGCTAGAATTTCG
GAAATGCGCAACACTCAATGCAGTGtctaaatcaattaaaaaatcCTCCT
CTTCCATGACtgggaaaaatttttaaatttcttatgtAGTAGCAGAGACA
GTAATATTGACcagtctttttcaaatttttgagcagAACGCAGTTGTTTA
TAATTTCCCTTTTATCGGGCTTCCCCTTTTATCGGGCTTCCCCTTTTATC
GGGCTTCCCCTTTTATCGGACTTTCCCTTTTATCTCAAGCTCTGTTTTAT
ACTTGTAGTTCAGTTTCAGTAATTCCTTTACTTTAATTCCTTGTACTTTC
AATCAGCTTGAGGGTGCTACTCAAACTGGGTTTGACAGTGTTTATCCCAG
CACTGAGTTCCCTCTCAGAACTGTGGCAGTTTGAACGTGCTGAACAAACT
GTTTGGCCGAAAAATAAATCAAtctgaatgtctaagacaggagacagatt
gtatAATTggactgtcagcaaattcactggtttatatatcaatttttgta
aaaaagtaaTGCAATTTGACTGCAAGAGACCTTTGTATAGAGAACCAAGA
GATTTGAAAATCCAAGATGTCTGCCAGCAAACCAAAAACGTGCTCACAAA
ATTATCTACACAATTTCCCCACTCTAAAAAAAAGGCCAATCAGGTTGCGA
GTACTCAAACATGGCGGCGTTTAACGCAATTGGATTTGTCAATGAAATCT
TAatagaccaatcaaatcacGTTATTTTCCCAGAATCTATATAGAGATCA
GTCAGTATGTTTCTTCGCCGTCCCgctaaaaaaacatgaaaaaacgTCCG
CCACGCGTGCCAAAAAAGAACCGCTTTATTGTTAGTTAAAGCTAACCGGG
CATCAAACTTTACGGAGCATTATATATTAGCCGGAACATACAATACGAAC
AAACAAAcgcaaaaattcgagattcctgtccaatatcttgcgtgaagcta
tgactgcctcctcactcgctgcgctcgttgcgggggcaaaaaaAGGACAT
CATTTAGCGgatctcctaccatttgcttacacagcatttttaaacgaAGG
AAAAAAGACTTACTCCTCCTgtgttttgaggaaattttattgttaagtCT
GCTTTATCAGCATAAAAGAGATACGTGTCCCTTCTATATCaaaggatttt
tttaaataatatccATGATCAAACATCGGACAACTTCAAGCCAATTAAAA
AGAATTGATTTAAATGTTAGCAAGCGTGAACATTCTTTGagcatattttg
aaaattagcaTTGTTATGCGCACATGCTCCTTAAGAAAATCTACAGGATG
CCTTTGAATTTGAACCCAAAAACTATTGTCTGTGgttttattctcaactt
cagtcgagctagaatctgagaatgtcagTCTGTCAGTCTTTCTGTTTATC
CGCTCAAACTTTTATGCAGGCTGTAGACTTAGGGAAGTGGTCTTAGCCCC
AAAGCGAGGCTAAAATATTTGGGACAACCTGGAGACTTCAAAAATGGTCT
GACTTGAAATTGTTTCTAAAGCAATTTTACAATTTGGCCTGCAATTGACT
TTAAAGATATTGAAGTTGAGCCAGTGCGGTTAGCATCAGGAAAATCAAAA
TGATTTGGATTTGGCTATAGCCGTCATTATGCAATGTAAAGCCATCCGTC
TTGTAACTATTTCCACCTTTCCATGCTATATAATAAGAGATGACCTTATC
TAATTTTTTTGCTGATATAACAGAGGCTCTTTAACTCGAACCTGTATTAA
TCCAATGTGTTCTTAACTGAAACAAAGTTTTTTCTTCCCTTCAGTTAACA
ATGTTTTATAAACCATACTCCACCACTCGAAATTTCCTCAACACGAACAA
AGTTGTGTTCTACGTGCGGGTTTGAGTTATGGAGACTCCGCTGATTCTTG
ATATGCCAAAAATGAATGGGAACAGTGGGCATGTAAATGAAGAAATCTCT
CCACTTTCTGAAAGTTTGAAGAAATTACAAGAAATCAATGAAGAAATTCG
AAGATTGAGGAGTTTAAGTTATAAAGAAAATGTGGATCAGGTAAGGACTC
TTTTTCAATATTCTTTTTGGGATGACATATTCTCTAAATGGGTTGTCCAT
CTGGGTCTTTTGATGCGGGGGTCAATTCTTGGAGCTGAAGGAGTCATATT
ATGGGTTTCCAAGTCATTCTGCGCTCTAACTTTCTTACAGTTACAAAAAT
ATTTTAAAAATTGAACCCTAAGGCTCGATTTCCTGCAATGATTTTACGAA
TCAAGATGGAGTCAATTCTCTTTAATCAGAGGCTCTACGATTCGAATTTT
TCTGTGATTTAAACTAAAAAAAATGGTCCTCTCATCTCAAAATACAGTAC
TCTTCGTGATTCGATAATGTTACGTCAATGATTTTACGAATCAAGATGGA
GTCAATTCTCTTTAATCAGAGGCTCTACGATTCGAATTTTCCTGTGATTT
AAACTAAAAAAATGGTCCTCTCATCTCAAAGTACAGTACTCTTCGTGATT
CGATAATGTTACGTTAATGATTTTACGAATCAAGATGGATTCAATTTTTT
TTAATCAGAGGCTCTACGATTCGAATTTTTCTGTGATTTAAACTAAAAAA
AATGGTCCTCTCATCTCAAAGTACAGTACTCTTCGTGATTCGATAATGTT
ACGTCAATGATTTTACGAATCAAGATGGATTCAATTTTTTTTAATCAGAG
GCTCTACGATTCGAATTTTTCTGTGATTCAAACTAAAAAAAATGGTCCTC
TCATCTCAAAGTACAGTACTCTTCGTGATTCGATAATGTTACGTCGACGA
TTTTATGAATGCGATTTTTGTATTTTTAATCGACTGAAGTACTTGCAAAC
ACTCGGGCGTTTATCGGATTAGATCTCTCTCCATCCAAATACTTTGAGTG
TTGTTTTTCTTATACTAAAAATATTGCCGACTTTGTTTAAACGATAGATA
GAGAAATTCCGAGAATAGGCCTTTATAATTcattttgagtgcaacgactg
cctcgttttgaagttATTACAGGTGATTAGATACCTCGCGTCTACAAAGT
GTTACTTCATACGAACTTCTCTGGGGCTTGATTTACTATAGCAATATTCT
GAAAAACGAGaagcgttgctcgtgacgtatTTTATGATAAGGTTTTgccg
ttgacaaatcaaaagggTTAATCACAAAATTAGTATCTGAGAAAGCTAAG
AGTTTTTCTGTCTAGCCAGGTCTAGCTAGCCTTAAATTTGAGATTGGCCC
ATTTTGCATAGTCAGGAGGGTCTCATCTACATGAAACagggtcaatctca
aaatttatgctCAGACAAACAGAAAAATTTATAGTTTTCTCAGgcaataa
ttttgagattggaccttttgatttgtcaacggcGATTTGAATCATCAGCC
TTCCCCGTGagttttcgagttatggagactccactataTGTGAAAAACTA
GCTTTTGCCGCTGGCCCTCGACTGCAGTCGCAAAATTTGTAAGCAAGCAG
CTCGgattcttattttttgacgtCCGGTCGCTATTGTGTCACATATATCA
ACCTCGCAAGTCATTTTGTTTTTAGCACAAACCACATTGACATAAttcta
gaaaaatcaaaaactgacCAAAACAGACATGGGAACAAAGTGACTATTTC
AGACATAGACGGTCCTTGTTCGGTAAGACACGTTCTTAACGATTACCTTT
TAAAGGCGAAGCTGAAAGACGACACAGAGGCatacattttttgtaaaatg
gtTAAAACAAAGGAAGGTCATAAAGCGGTAGGAAGACACAAAATCAGTTA
TAGCACGGCAAGGAAAGAATTTCTCAGTTTGCTGAGTTCAGTTTTACCAG
AGTCAGNN Run BLAST on NCBI transcript from alignment at sc0001335:64188..69054- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035586 ID=TCONS_00035586|Name=TCONS_00035586|organism=Clytia hemisphaerica|type=transcript|length=4867bp|location=Sequence derived from alignment at sc0001335:64188..69054- (Clytia hemisphaerica)
CGGGAGTACTTTTGTTCAGGGAGTACTTATTTTCTGCTACACCGGTATAT
TGACAGAGCAAGTATCGCAATTTATTACTGAACTTGGATTAATAAGAGAA
TTCAATACACAGTTCGGCCATGAACTTGCATCAATCATAATCTCTGGATA
CATAATTTCTGAAAGGATACTAACAATGTTACCTGTTTCTCTCCGTTCTT
TTTCACAACTGCAACTATTACATGTACCTTGAATTACATAGCTTACTTCA
AAAATGTGTCTCTCTCTTTCTGATAAGTTCTTGAAAATATTACTTCCAAA
AATCTCTTGAAACTCTGCGTCACTATTTCTTTTTCTAAACGTACCACAAT
TTTCAATGATCCTTGACCATAGTGGTTCTCTAATTTCATCCAGAAGTCGA
AATGCATTACTTTTCATATCGTCACTTTCAAATGGAATTTCCATTGATCC
ACTTATTTGAAGCAAATTGAAAAAGTCACTTGATTCTTCAAAATATATTT
TAGCTTTTATTTCTGGGAGAAGCAAGCGGTAACTAATTTCAAGAAAACAG
TCAACCGCACAAGAATAGGTACGTCCACGAGTTGATCTGCTAGAATTTCG
GAAATGCGCAACACTCAATGCAGTGTCTAAATCAATTAAAAAATCCTCCT
CTTCCATGACTGGGAAAAATTTTTAAATTTCTTATGTAGTAGCAGAGACA
GTAATATTGACCAGTCTTTTTCAAATTTTTGAGCAGAACGCAGTTGTTTA
TAATTTCCCTTTTATCGGGCTTCCCCTTTTATCGGGCTTCCCCTTTTATC
GGGCTTCCCCTTTTATCGGACTTTCCCTTTTATCTCAAGCTCTGTTTTAT
ACTTGTAGTTCAGTTTCAGTAATTCCTTTACTTTAATTCCTTGTACTTTC
AATCAGCTTGAGGGTGCTACTCAAACTGGGTTTGACAGTGTTTATCCCAG
CACTGAGTTCCCTCTCAGAACTGTGGCAGTTTGAACGTGCTGAACAAACT
GTTTGGCCGAAAAATAAATCAATCTGAATGTCTAAGACAGGAGACAGATT
GTATAATTGGACTGTCAGCAAATTCACTGGTTTATATATCAATTTTTGTA
AAAAAGTAATGCAATTTGACTGCAAGAGACCTTTGTATAGAGAACCAAGA
GATTTGAAAATCCAAGATGTCTGCCAGCAAACCAAAAACGTGCTCACAAA
ATTATCTACACAATTTCCCCACTCTAAAAAAAAGGCCAATCAGGTTGCGA
GTACTCAAACATGGCGGCGTTTAACGCAATTGGATTTGTCAATGAAATCT
TAATAGACCAATCAAATCACGTTATTTTCCCAGAATCTATATAGAGATCA
GTCAGTATGTTTCTTCGCCGTCCCGCTAAAAAAACATGAAAAAACGTCCG
CCACGCGTGCCAAAAAAGAACCGCTTTATTGTTAGTTAAAGCTAACCGGG
CATCAAACTTTACGGAGCATTATATATTAGCCGGAACATACAATACGAAC
AAACAAACGCAAAAATTCGAGATTCCTGTCCAATATCTTGCGTGAAGCTA
TGACTGCCTCCTCACTCGCTGCGCTCGTTGCGGGGGCAAAAAAAGGACAT
CATTTAGCGGATCTCCTACCATTTGCTTACACAGCATTTTTAAACGAAGG
AAAAAAGACTTACTCCTCCTGTGTTTTGAGGAAATTTTATTGTTAAGTCT
GCTTTATCAGCATAAAAGAGATACGTGTCCCTTCTATATCAAAGGATTTT
TTTAAATAATATCCATGATCAAACATCGGACAACTTCAAGCCAATTAAAA
AGAATTGATTTAAATGTTAGCAAGCGTGAACATTCTTTGAGCATATTTTG
AAAATTAGCATTGTTATGCGCACATGCTCCTTAAGAAAATCTACAGGATG
CCTTTGAATTTGAACCCAAAAACTATTGTCTGTGGTTTTATTCTCAACTT
CAGTCGAGCTAGAATCTGAGAATGTCAGTCTGTCAGTCTTTCTGTTTATC
CGCTCAAACTTTTATGCAGGCTGTAGACTTAGGGAAGTGGTCTTAGCCCC
AAAGCGAGGCTAAAATATTTGGGACAACCTGGAGACTTCAAAAATGGTCT
GACTTGAAATTGTTTCTAAAGCAATTTTACAATTTGGCCTGCAATTGACT
TTAAAGATATTGAAGTTGAGCCAGTGCGGTTAGCATCAGGAAAATCAAAA
TGATTTGGATTTGGCTATAGCCGTCATTATGCAATGTAAAGCCATCCGTC
TTGTAACTATTTCCACCTTTCCATGCTATATAATAAGAGATGACCTTATC
TAATTTTTTTGCTGATATAACAGAGGCTCTTTAACTCGAACCTGTATTAA
TCCAATGTGTTCTTAACTGAAACAAAGTTTTTTCTTCCCTTCAGTTAACA
ATGTTTTATAAACCATACTCCACCACTCGAAATTTCCTCAACACGAACAA
AGTTGTGTTCTACGTGCGGGTTTGAGTTATGGAGACTCCGCTGATTCTTG
ATATGCGTAAGTCAAGATGACGTCATATTTTTTAACGGAAGCACTCGAAA
AAGCAGGATTTTGACCTCTGTGTTTCTATTTTTAGTAACAGAGAGAGATC
AAATCCTGGATTTTTTCGGGTGTTTCCGTTAGAAAAATGACTTACGCATA
TCAAGAATAGTGACACTGATTACAACATTTTAACCAACAGGTGCCAGGTC
CACGACAGTATTATTGTATTGACCGTAAAAAATCTGATGGATATTTTATA
TTTTTTGTCTTTTTTCACTTGCAGCAAAAATGAATGGGAACAGTGGGCAT
GTAAATGAAGAAATCTCTCCACTTTGTAAGTAATATTGTGTTTTTTTAAT
TATTTGCAAAGCTACTCTGTAAGATGTAGCCAAGAAATTCCATTTTCTCT
TTTCGGGCTCTATGTTTTTTCTCTTCCAACTTCAAACTTCTACAACTGTT
TGTTGTTTTTTTTTAGCTGAAAGTTTGAAGAAATTACAAGAAATCAATGA
AGAAATTCGAAGATTGAGGAGTTTAAGTTATAAAGAAAATGTGGATCAGG
TAAGGACTCTTTTTCAATATTCTTTTTGGGATGACATATTCTCTAAATGG
GTTGTCCATCTGGGTCTTTTGATGCGGGGGTCAATTCTTGGAGCTGAAGG
AGTCATATTATGGGTTTCCAAGTCATTCTGCGCTCTAACTTTCTTACAGT
TACAAAAATATTTTAAAAATTGAACCCTAAGGCTCGATTTCCTGCAATGA
TTTTACGAATCAAGATGGAGTCAATTCTCTTTAATCAGAGGCTCTACGAT
TCGAATTTTTCTGTGATTTAAACTAAAAAAAATGGTCCTCTCATCTCAAA
ATACAGTACTCTTCGTGATTCGATAATGTTACGTCAATGATTTTACGAAT
CAAGATGGAGTCAATTCTCTTTAATCAGAGGCTCTACGATTCGAATTTTC
CTGTGATTTAAACTAAAAAAATGGTCCTCTCATCTCAAAGTACAGTACTC
TTCGTGATTCGATAATGTTACGTTAATGATTTTACGAATCAAGATGGATT
CAATTTTTTTTAATCAGAGGCTCTACGATTCGAATTTTTCTGTGATTTAA
ACTAAAAAAAATGGTCCTCTCATCTCAAAGTACAGTACTCTTCGTGATTC
GATAATGTTACGTCAATGATTTTACGAATCAAGATGGATTCAATTTTTTT
TAATCAGAGGCTCTACGATTCGAATTTTTCTGTGATTCAAACTAAAAAAA
ATGGTCCTCTCATCTCAAAGTACAGTACTCTTCGTGATTCGATAATGTTA
CGTCGACGATTTTATGAATGCGATTTTTGTATTTTTAATCGACTGAAGTA
CTTGCAAACACTCGGGCGTTTATCGGATTAGATCTCTCTCCATCCAAATA
CTTTGAGTGTTGTTTTTCTTATACTAAAAATATTGCCGACTTTGTTTAAA
CGATAGATAGAGAAATTCCGAGAATAGGCCTTTATAATTCATTTTGAGTG
CAACGACTGCCTCGTTTTGAAGTTATTACAGGTGATTAGATACCTCGCGT
CTACAAAGTGTTACTTCATACGAACTTCTCTGGGGCTTGATTTACTATAG
CAATATTCTGAAAAACGAGAAGCGTTGCTCGTGACGTATTTTATGATAAG
GTTTTGCCGTTGACAAATCAAAAGGGTTAATCACAAAATTAGTATCTGAG
AAAGCTAAGAGTTTTTCTGTCTAGCCAGGTCTAGCTAGCCTTAAATTTGA
GATTGGCCCATTTTGCATAGTCAGGAGGGTCTCATCTACATGAAACAGGG
TCAATCTCAAAATTTATGCTCAGACAAACAGAAAAATTTATAGTTTTCTC
AGGCAATAATTTTGAGATTGGACCTTTTGATTTGTCAACGGCGATTTGAA
TCATCAGCCTTCCCCGTGAGTTTTCGAGTTATGGAGACTCCACTATATGT
GAAAAACTAGCTTTTGCCGCTGGCCCTCGACTGCAGTCGCAAAATTTGTA
AGCAAGCAGCTCGGATTCTTATTTTTTGACGTCCGGTCGCTATTGTGTCA
CATATATCAACCTCGCAAGTCATTTTGTTTTTAGCACAAACCACATTGAC
ATAATTCTAGAAAAATCAAAAACTGACCAAAACAGACATGGGAACAAAGT
GACTATTTCAGACATAGACGGTCCTTGTTCGGTAAGACACGTTCTTAACG
ATTACCTTTTAAAGGCGAAGCTGAAAGACGACACAGAGGCATACATTTTT
TGTAAAATGGTTAAAACAAAGGAAGGTCATAAAGCGGTAGGAAGACACAA
AATCAGTTATAGCACGGCAAGGAAAGAATTTCTCAGTTTGCTGAGTTCAG
TTTTACCAGAGTCAGNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035586-exon-sc0001335-1575043694:66549..69054 | TCONS_00035586-exon-sc0001335-1575043694:66549..69054 | Clytia hemisphaerica | exon |
| TCONS_00035586-exon-sc0001335-1575043694:66230..66280 | TCONS_00035586-exon-sc0001335-1575043694:66230..66280 | Clytia hemisphaerica | exon |
| TCONS_00035586-exon-sc0001335-1575043694:64188..66088 | TCONS_00035586-exon-sc0001335-1575043694:64188..66088 | Clytia hemisphaerica | exon |
| TCONS_00035586-exon-sc0001335-1510915933:66549..69054 | TCONS_00035586-exon-sc0001335-1510915933:66549..69054 | Clytia hemisphaerica | exon |
| TCONS_00035586-exon-sc0001335-1510915933:66230..66280 | TCONS_00035586-exon-sc0001335-1510915933:66230..66280 | Clytia hemisphaerica | exon |
| TCONS_00035586-exon-sc0001335-1510915933:64188..66088 | TCONS_00035586-exon-sc0001335-1510915933:64188..66088 | Clytia hemisphaerica | exon |
| TCONS_00035586-exon-sc0001335-1491911889:66549..69054 | TCONS_00035586-exon-sc0001335-1491911889:66549..69054 | Clytia hemisphaerica | exon |
| TCONS_00035586-exon-sc0001335-1491911889:66230..66280 | TCONS_00035586-exon-sc0001335-1491911889:66230..66280 | Clytia hemisphaerica | exon |
| TCONS_00035586-exon-sc0001335-1491911889:64188..66088 | TCONS_00035586-exon-sc0001335-1491911889:64188..66088 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001335 | supercontig | sc0001335:64188..69054 - |
Blast
The following BLAST results are available for this feature:
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