TCONS_00035581 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00035581
Unique Name	TCONS_00035581
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1698

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0001335:60991..66087+

transcript sequence

>TCONS_00035581 ID=TCONS_00035581|Name=TCONS_00035581|organism=Clytia hemisphaerica|type=transcript|length=1698bp
TAGACTTCTCCTCTAACTATAAACCATAGTAACTCCCAACAGTACCCTTA
AAACTCCCTTAcccacaaaaagaaaaagacacaGTGTTTTCTTTAAATGT
TGGTGTTCGGGTTCTTTTGTCAGCACGAACAAGGACCGTCTATGTCTGAA
ATAGTCACTTTGTTCCCATGTCTGTTTTGgtcagtttttgatttttctag
aaTTATGTCAATGTGGTTTGTGCTAAAAACAAAATGACTTGCGAGGTTGA
TATATGTGACACAATAGCGACCGGacgtcaaaaaataagaatcCGAGCTG
CTTGCTTACAAATTTTGCGACTGCAGTCGAGGGCCAGCGGCAAAAGCTAG
TTTTTCACAtatagtggagtctccataactcgaaaactCACGGGGAAGGC
TGATGATTCAAATCgccgttgacaaatcaaaaggtccaatctcaaaatta
ttgcCTGAGAAAACTATAAATTTTTCTGTTTGTCTGagcataaattttga
gattgaccctGTTTCATGTAGATGAGACCCTCCTGACTATGCAAAATGGG
CCAATCTCAAATTTAAGGCTAGCTAGACCTGGCTAGACAGAAAAACTCTT
AGCTTTCTCAGATACTAATTTTGTGATTAAcccttttgatttgtcaacgg
cAAAACCTTATCATAAAatacgtcacgagcaacgcttCTCGTTTTTCAGA
ATATTGCTATAGTAAATCAAGCCCCAGAGAAGTTCGTATGAAGTAACACT
TTGTAGACGCGAGGTATCTAATCACCTGTAATaacttcaaaacgaggcag
tcgttgcactcaaaatgAATTATAAAGGCCTATTCTCGGAATTTCTCTAT
CTATCGTTTAAACAAAGTCGGCAATATTTTTAGTATAAGAAAAACAACAC
TCAAAGTATTTGGATGGAGAGAGATCTAATCCGATAAACGCCCGAGTGTT
TGCAAGTACTTCAGTCGATTAAAAATACAAAAATCGCATTCATAAAATCG
TCGACGTAACATTATCGAATCACGAAGAGTACTGTACTTTGAGATGAGAG
GACCATTTTTTTTAGTTTGAATCACAGAAAAATTCGAATCGTAGACCTCT
GATTAAAAAAAATTGAATCCATCTTGATTCGTAAAATCATTAACGTAACA
TTATCGAATCACGAAGAGTACTGTACTTTGAGATGAGAGGACCATTTTTT
TAGTTTAAATCACAGGAAAATTCGAATCGTAGAGCCTCTGATTAAAGAGA
ATTGACTCCATCTTGATTCGTAAAATCATTGACGTAACATTATCGAATCA
CGAAGAGTACTGTATTTTGAGATGAGAGGACCATTTTTTTTAGTTTAAAT
CACAGAAAAATTCGAATCGTAGAGCCTCTGATTAAAGAGAATTGACTCCA
TCTTGATTCGTAAAATCATTGCAGGAAATCGAGCCTTAGGGTTCAATTTT
TAAAATATTTTTGTAACTGTAAGAAAGTTAGAGCGCAGAATGACTTGGAA
ACCCATAATATGACTCCTTCAGCTCCAAGAATTGACCCCCGCATCAAAAG
ACCCAGATGGACAACCCATTTAGAGAATATGTCATCCCAAAAAGAATATT
GAAAAAGAGTCCTTACCTGATCCACATTTTCTTTATAACTTAAACTCCTC
AATCTTCGAATTTCTTCATTGATTTCTTGTAATTTCTTCAAACTTTCA

Run BLAST on NCBI

transcript from alignment at sc0001335:60991..66087+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00035581 ID=TCONS_00035581|Name=TCONS_00035581|organism=Clytia hemisphaerica|type=transcript|length=5097bp|location=Sequence derived from alignment at sc0001335:60991..66087+ (Clytia hemisphaerica)
TAGACTTCTCCTCTAACTATAAACCATAGTAACTCCCAACAGTACCCTTA
AAACTCCCTTAcccacaaaaagaaaaagacacaGTGTTTTCTTTAAATGT
TGGTGTTCGGGTTCTTTTGTCAGCAATGAGAATACTCTGGACAGCGAATA
AAATACAAGGCGTTTGCTCGTTGAGTACAGTATAAAAATTTTCTAGCTTG
AATGTCATTattgtttcatcaaaatgaatAGTGATTGCGAACCGGCCGGA
TGCGCCACAAACCCCTTCATGAGAGGAAATACATATTCCTCGTCCCAATG
CACGGTCGCGTCCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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TGACTCTGGTAAAACTGAACTCAGCAAACTGAGAAATTCTTTCCTTGCCG
TGCTATAACTGATTTTGTGTCTTCCTACCGCTTTATGACCTTCCTTTGTT
TTAaccattttacaaaaaatgtatGCCTCTGTGTCGTCTTTCAGCTTCGC
CTTTAAAAGGTAATCGTTAAGAACGTGTCTTACCGAACAAGGACCGTCTA
TGTCTGAAATAGTCACTTTGTTCCCATGTCTGTTTTGgtcagtttttgat
ttttctagaaTTATGTCAATGTGGTTTGTGCTAAAAACAAAATGACTTGC
GAGGTTGATATATGTGACACAATAGCGACCGGacgtcaaaaaataagaat
cCGAGCTGCTTGCTTACAAATTTTGCGACTGCAGTCGAGGGCCAGCGGCA
AAAGCTAGTTTTTCACAtatagtggagtctccataactcgaaaactCACG
GGGAAGGCTGATGATTCAAATCgccgttgacaaatcaaaaggtccaatct
caaaattattgcCTGAGAAAACTATAAATTTTTCTGTTTGTCTGagcata
aattttgagattgaccctGTTTCATGTAGATGAGACCCTCCTGACTATGC
AAAATGGGCCAATCTCAAATTTAAGGCTAGCTAGACCTGGCTAGACAGAA
AAACTCTTAGCTTTCTCAGATACTAATTTTGTGATTAAcccttttgattt
gtcaacggcAAAACCTTATCATAAAatacgtcacgagcaacgcttCTCGT
TTTTCAGAATATTGCTATAGTAAATCAAGCCCCAGAGAAGTTCGTATGAA
GTAACACTTTGTAGACGCGAGGTATCTAATCACCTGTAATaacttcaaaa
cgaggcagtcgttgcactcaaaatgAATTATAAAGGCCTATTCTCGGAAT
TTCTCTATCTATCGTTTAAACAAAGTCGGCAATATTTTTAGTATAAGAAA
AACAACACTCAAAGTATTTGGATGGAGAGAGATCTAATCCGATAAACGCC
CGAGTGTTTGCAAGTACTTCAGTCGATTAAAAATACAAAAATCGCATTCA
TAAAATCGTCGACGTAACATTATCGAATCACGAAGAGTACTGTACTTTGA
GATGAGAGGACCATTTTTTTTAGTTTGAATCACAGAAAAATTCGAATCGT
AGAGCCTCTGATTAAAAAAAATTGAATCCATCTTGATTCGTAAAATCATT
GACGTAACATTATCGAATCACGAAGAGTACTGTACTTTGAGATGAGAGGA
CCATTTTTTTTAGTTTAAATCACAGAAAAATTCGAATCGTAGAGCCTCTG
ATTAAAAAAAATTGAATCCATCTTGATTCGTAAAATCATTAACGTAACAT
TATCGAATCACGAAGAGTACTGTACTTTGAGATGAGAGGACCATTTTTTT
AGTTTAAATCACAGGAAAATTCGAATCGTAGAGCCTCTGATTAAAGAGAA
TTGACTCCATCTTGATTCGTAAAATCATTGACGTAACATTATCGAATCAC
GAAGAGTACTGTATTTTGAGATGAGAGGACCATTTTTTTTAGTTTAAATC
ACAGAAAAATTCGAATCGTAGAGCCTCTGATTAAAGAGAATTGACTCCAT
CTTGATTCGTAAAATCATTGCAGGAAATCGAGCCTTAGGGTTCAATTTTT
AAAATATTTTTGTAACTGTAAGAAAGTTAGAGCGCAGAATGACTTGGAAA
CCCATAATATGACTCCTTCAGCTCCAAGAATTGACCCCCGCATCAAAAGA
CCCAGATGGACAACCCATTTAGAGAATATGTCATCCCAAAAAGAATATTG
AAAAAGAGTCCTTACCTGATCCACATTTTCTTTATAACTTAAACTCCTCA
ATCTTCGAATTTCTTCATTGATTTCTTGTAATTTCTTCAAACTTTCA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_020833	XLOC_020833	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00035581-exon-sc0001335-1491911889:60991..61115	TCONS_00035581-exon-sc0001335-1491911889:60991..61115	Clytia hemisphaerica	exon
TCONS_00035581-exon-sc0001335-1510915933:60991..61115	TCONS_00035581-exon-sc0001335-1510915933:60991..61115	Clytia hemisphaerica	exon
TCONS_00035581-exon-sc0001335-1575043694:60991..61115	TCONS_00035581-exon-sc0001335-1575043694:60991..61115	Clytia hemisphaerica	exon
TCONS_00035581-exon-sc0001335-1491911889:64374..65343	TCONS_00035581-exon-sc0001335-1491911889:64374..65343	Clytia hemisphaerica	exon
TCONS_00035581-exon-sc0001335-1510915933:64374..65343	TCONS_00035581-exon-sc0001335-1510915933:64374..65343	Clytia hemisphaerica	exon
TCONS_00035581-exon-sc0001335-1575043694:64374..65343	TCONS_00035581-exon-sc0001335-1575043694:64374..65343	Clytia hemisphaerica	exon
TCONS_00035581-exon-sc0001335-1491911889:65485..66087	TCONS_00035581-exon-sc0001335-1491911889:65485..66087	Clytia hemisphaerica	exon
TCONS_00035581-exon-sc0001335-1510915933:65485..66087	TCONS_00035581-exon-sc0001335-1510915933:65485..66087	Clytia hemisphaerica	exon
TCONS_00035581-exon-sc0001335-1575043694:65485..66087	TCONS_00035581-exon-sc0001335-1575043694:65485..66087	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0001335	supercontig	sc0001335:60991..66087 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.142455	0.91764	8.04949	7.78864	19.1535	25.4803	32.2422	28.7949	23.0101	32.8316	10.1901	9.69993	0.00401216	0	0	0	0.0254151	0	0	0	0	0	2.71898	11.4775	0.0130099	0	0	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00035581 vs. Swiss-Prot (Human)

BLAST of TCONS_00035581 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00035581 (transcript) - C. hemisphaerica