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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035580 ID=TCONS_00035580|Name=TCONS_00035580|organism=Clytia hemisphaerica|type=transcript|length=1217bp
CAGAGAGTTAAGTCCATCTCTGTTTTCTTGTATCTTGTTCTTGTTTTCTT
TGACGTTAAGTTTTACAATTTCTACCTCAGTGGTCACTGAGTTTAAAGCC
TCTTCGATGTTCTCAAGGGCGAGTTCCCATGAGTGATTTACATCTGTGTA
AGGGGGGTCTGCAGTGACTCTGAGAAATTCCGTTTCTTTATCTTGCAGCA
TCAGTGTTTCTTCTTCTAGGTTAGACACATTGTATATACTTGTCTTTGTA
GGTGTAAATGCGTAAACCATTCCGTTGTACTTAAACGTGCTTATTGGAGG
TGGGAGAGGGATTTCTTCTCCTCCTATGACGTTGTTTCGTTGGTCCAGCC
GTCTCACATTTTTGAAGTCCAGGTGACATACTACAAAATCCATAGCGATT
AGAAGTTGCAGTAATCCTTGTCTTTGGCGTACCTGTTTCATGGTGAGGGC
TTTCCCGTCTAGTTCGTTTGCTGCCACGATGGCTCGTGCCATGTGGGTTC
TGGTTTTGTTGTTTAGTTTCTTCTCTTCCTTAAGTCCTTGCAGGAGCTTC
AGGATCTCTTCTGGTTTTCTTGTGACTTTAAGAACTGGTTTGTTGATGTC
GAGGATAACTGGGGTGTATGCTAGTTTTTCAACTATTGTTCTGTCCCAAA
TTGGGGTGCCATTTCTGGGGAAGCATCGATACTGTCGTTCGATGTCTTGA
AGCGTTTCATGCAGTATACCATTGTCCAGAGATCTTTGGTTGACTTCTTG
TGGACGTCTTTGAAGGGCTAGCTGGGTGGCTAGTTCCGTTCTTTGTAAGG
CATGAATTTCTTCATACCTGTCTTCTAAGTCCATGTCGACGAGGGATGAT
GCAGTTTCGGCGGAAATCCACATGATTTCTCCTTGGGATGTGATGATGTA
CTTATCCGGTTTGTATTCATAGATAAGTCTGACGTGTTTTTGTCCGTTGG
TGTGGTACTCCACAGTGTTTCCGTGTACTTGGATGACTACGGTTCCTTGT
GGGGTCAGTTCTGTGATGTTGTCGTTTGTGATCGTCGGGATGAGGGCTCC
ATATTTCCATATGTACCTCTCCTTGTTTACTGGTGTTTGGAGTTTAAGGG
GACTATGTTGTATTGAGGGAGTACATCCTATCCAGGTGACCATTCTCCAT
AGTCTGGCTGAGAAGGATAATCCTAAGCAGTTTCTTTCATACTGACGTCT
CGTGTTTCCTTCTGTGA Run BLAST on NCBI protein sequence of TCONS_00035580-protein >TCONS_00035580-protein ID=TCONS_00035580-protein|Name=TCONS_00035580-protein|organism=Clytia hemisphaerica|type=polypeptide|length=405bp
TEGNTRRQYERNCLGLSFSARLWRMVTWIGCTPSIQHSPLKLQTPVNKER
YIWKYGALIPTITNDNITELTPQGTVVIQVHGNTVEYHTNGQKHVRLIYE
YKPDKYIITSQGEIMWISAETASSLVDMDLEDRYEEIHALQRTELATQLA
LQRRPQEVNQRSLDNGILHETLQDIERQYRCFPRNGTPIWDRTIVEKLAY
TPVILDINKPVLKVTRKPEEILKLLQGLKEEKKLNNKTRTHMARAIVAAN
ELDGKALTMKQVRQRQGLLQLLIAMDFVVCHLDFKNVRRLDQRNNVIGGE
EIPLPPPISTFKYNGMVYAFTPTKTSIYNVSNLEEETLMLQDKETEFLRV
TADPPYTDVNHSWELALENIEEALNSVTTEVEIVKLNVKENKNKIQENRD
GLNSL Run BLAST on NCBI transcript from alignment at sc0001334:64285..65501 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035580 ID=TCONS_00035580|Name=TCONS_00035580|organism=Clytia hemisphaerica|type=transcript|length=1217bp|location=Sequence derived from alignment at sc0001334:64285..65501 (Clytia hemisphaerica)
TCACAGAAGGAAACACGAGACGTCAGTATGAAAGAAACTGCTTAGGATTA
TCCTTCTCAGCCAGACTATGGAGAATGGTCACCTGGATAGGATGTACTCC
CTCAATACAACATAGTCCCCTTAAACTCCAAACACCAGTAAACAAGGAGA
GGTACATATGGAAATATGGAGCCCTCATCCCGACGATCACAAACGACAAC
ATCACAGAACTGACCCCACAAGGAACCGTAGTCATCCAAGTACACGGAAA
CACTGTGGAGTACCACACCAACGGACAAAAACACGTCAGACTTATCTATG
AATACAAACCGGATAAGTACATCATCACATCCCAAGGAGAAATCATGTGG
ATTTCCGCCGAAACTGCATCATCCCTCGTCGACATGGACTTAGAAGACAG
GTATGAAGAAATTCATGCCTTACAAAGAACGGAACTAGCCACCCAGCTAG
CCCTTCAAAGACGTCCACAAGAAGTCAACCAAAGATCTCTGGACAATGGT
ATACTGCATGAAACGCTTCAAGACATCGAACGACAGTATCGATGCTTCCC
CAGAAATGGCACCCCAATTTGGGACAGAACAATAGTTGAAAAACTAGCAT
ACACCCCAGTTATCCTCGACATCAACAAACCAGTTCTTAAAGTCACAAGA
AAACCAGAAGAGATCCTGAAGCTCCTGCAAGGACTTAAGGAAGAGAAGAA
ACTAAACAACAAAACCAGAACCCACATGGCACGAGCCATCGTGGCAGCAA
ACGAACTAGACGGGAAAGCCCTCACCATGAAACAGGTACGCCAAAGACAA
GGATTACTGCAACTTCTAATCGCTATGGATTTTGTAGTATGTCACCTGGA
CTTCAAAAATGTGAGACGGCTGGACCAACGAAACAACGTCATAGGAGGAG
AAGAAATCCCTCTCCCACCTCCAATAAGCACGTTTAAGTACAACGGAATG
GTTTACGCATTTACACCTACAAAGACAAGTATATACAATGTGTCTAACCT
AGAAGAAGAAACACTGATGCTGCAAGATAAAGAAACGGAATTTCTCAGAG
TCACTGCAGACCCCCCTTACACAGATGTAAATCACTCATGGGAACTCGCC
CTTGAGAACATCGAAGAGGCTTTAAACTCAGTGACCACTGAGGTAGAAAT
TGTAAAACTTAACGTCAAAGAAAACAAGAACAAGATACAAGAAAACAGAG
ATGGACTTAACTCTCTG Coding sequence (CDS) from alignment at sc0001334:64285..65501 >TCONS_00035580 ID=TCONS_00035580|Name=TCONS_00035580|organism=Clytia hemisphaerica|type=CDS|length=1215bp|location=Sequence derived from alignment at sc0001334:64285..65501 (Clytia hemisphaerica)
ACAGAAGGAAACACGAGACGTCAGTATGAAAGAAACTGCTTAGGATTATC
CTTCTCAGCCAGACTATGGAGAATGGTCACCTGGATAGGATGTACTCCCT
CAATACAACATAGTCCCCTTAAACTCCAAACACCAGTAAACAAGGAGAGG
TACATATGGAAATATGGAGCCCTCATCCCGACGATCACAAACGACAACAT
CACAGAACTGACCCCACAAGGAACCGTAGTCATCCAAGTACACGGAAACA
CTGTGGAGTACCACACCAACGGACAAAAACACGTCAGACTTATCTATGAA
TACAAACCGGATAAGTACATCATCACATCCCAAGGAGAAATCATGTGGAT
TTCCGCCGAAACTGCATCATCCCTCGTCGACATGGACTTAGAAGACAGGT
ATGAAGAAATTCATGCCTTACAAAGAACGGAACTAGCCACCCAGCTAGCC
CTTCAAAGACGTCCACAAGAAGTCAACCAAAGATCTCTGGACAATGGTAT
ACTGCATGAAACGCTTCAAGACATCGAACGACAGTATCGATGCTTCCCCA
GAAATGGCACCCCAATTTGGGACAGAACAATAGTTGAAAAACTAGCATAC
ACCCCAGTTATCCTCGACATCAACAAACCAGTTCTTAAAGTCACAAGAAA
ACCAGAAGAGATCCTGAAGCTCCTGCAAGGACTTAAGGAAGAGAAGAAAC
TAAACAACAAAACCAGAACCCACATGGCACGAGCCATCGTGGCAGCAAAC
GAACTAGACGGGAAAGCCCTCACCATGAAACAGGTACGCCAAAGACAAGG
ATTACTGCAACTTCTAATCGCTATGGATTTTGTAGTATGTCACCTGGACT
TCAAAAATGTGAGACGGCTGGACCAACGAAACAACGTCATAGGAGGAGAA
GAAATCCCTCTCCCACCTCCAATAAGCACGTTTAAGTACAACGGAATGGT
TTACGCATTTACACCTACAAAGACAAGTATATACAATGTGTCTAACCTAG
AAGAAGAAACACTGATGCTGCAAGATAAAGAAACGGAATTTCTCAGAGTC
ACTGCAGACCCCCCTTACACAGATGTAAATCACTCATGGGAACTCGCCCT
TGAGAACATCGAAGAGGCTTTAAACTCAGTGACCACTGAGGTAGAAATTG
TAAAACTTAACGTCAAAGAAAACAAGAACAAGATACAAGAAAACAGAGAT
GGACTTAACTCTCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035580-exon-sc0001334-1491911889:64285..65501 | TCONS_00035580-exon-sc0001334-1491911889:64285..65501 | Clytia hemisphaerica | exon |
| TCONS_00035580-exon-sc0001334-1510915933:64285..65501 | TCONS_00035580-exon-sc0001334-1510915933:64285..65501 | Clytia hemisphaerica | exon |
| TCONS_00035580-exon-sc0001334-1575043694:64285..65501 | TCONS_00035580-exon-sc0001334-1575043694:64285..65501 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001334 | supercontig | sc0001334:64285..65501 . |
Blast
The following BLAST results are available for this feature:
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