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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035576 ID=TCONS_00035576|Name=TCONS_00035576|organism=Clytia hemisphaerica|type=transcript|length=1706bp
NTTGTTGTTGTCTGTTGTTGTTGGTTCGGTGATTTTGGTTGTGGGTCTGT
TGGGGTTGTTGTTGATTGTTTCGTCTGTTGTTTCCTGAGCCTTTTCCTCC
CGAAGTTCCAACCTGAGAACCCTCAGCGTTGAACTTTTCTAGTTTTCCAT
TTTGTCGAAGGATACTGTCGTATTTCATTAGATCGTCATACGCGGTCATG
AAGTCCTGAGTTGGCATCTCTGAGAGCTTCATCCTGAATTGTGGATTTAA
TGCTTTCTTGAAGATAAGGAATTGCATTGACGGATCCAATTCTACTTCAG
CCttcattttcatgaattttttgaGGAATGCTTCGAGGCTCATATCTCCT
TGTTTCAGATTCCATAGAGCGTCTACGGCTTCGCCTGAGTCGCTCTTTAC
GGCTTGCATCTTTGCCAATTCGCGGACAATGCCATCGTAATCGACGTATC
TTGTGTGATCTCCACCTTGCCATAGCTTGACTCGTTGGAGTGCTAGTCCG
TGGAGAAGTGTCATTATGGTGACTGCGTTCTGTTTCTTGTCATATCCCAT
CGCGTTGGCTAGGGTATCGAATGATTCGACGAAGGATTTGGCAGATTCGG
ACATTCCAGCTTCGTGCTTTCGGCTTCCCGAATACTTTGGCCACATGTCA
TTGGTGACACGCATCCTGTTGCTTTTCTGCATTTCTTCTCGTTCTTGTCT
GTTTAGTGTTGTAATGCGGATACCCGTGACTTTGTCTCTAGCCAATAAGT
CCGTGGTGATGAGGTCCGTGATTGCATCAATTCCTTCTTTTGGAGTTTCA
CTGACTCCTGGTTTTCTTGGGATGTTCTGCTGGACCGTTTGATTAATTCC
AGTAGAGTATGTGACTTCTGGATTGTCTTCCTCTTCGTCTTCATCTTCTG
AATCATCCGAGATTACTTGAGAGAAGTGGATGTCTGCGTTTGGGTTTTCG
CTTGTAGACTGAGGGGGTTGGTTCTGGGTTTTGTAGATGATGAATTTATA
CTTCTTGTCTTCTTTCAGTTGTTCGGAAATGCGAGTAGAGGGTTTTCCTT
GGCTCTTTCCTCTACGTGTTTCGAGATATGCCAAAGCGAACTTGGGCTTT
TCTGCTTGGACGGTTCCTAGCACCGAGGGGGATGTTCTCTTCAGGATCAC
GTCCTCTAGGTACTTGGAGTATGCGTAATAGTTTGAGAATTGTTTCATgt
attctctctctctcttttgaACTGTTCTGAGTGTTACGTCTTCTGTCTCT
ACACTTTGAGCTTCGTGTAGCTTTTCGCGAATGACTTTGATTTCTTCGTC
CTTTTGACGTAAGGCGTTTTGTTGGTCTGCTTTAAGCTTCTCCATCCTTT
GGATGAGTGCTTGATCTTCAGTGTCGCCTCCCTTTAAACTTTGAAGAGAG
TGTATAGTGGCGCTTTTGATGTCCAGTTGCATCTCGAGATCCATGATGCG
TGATTGTTGTGCTCTTGTCTTCTCATTCCAGTTTTCTTGATCTTTGCTGA
AGGCGGCTTTCATGCTGTTCACCATTTTCAGTTGCTCTTCGTGGTGTCGA
TGGAGGGTTTGGATGACCTCCGTGATGACTTCTCTGTCATACATTAGGGC
GTCGACAGCCATCCAAGCTGTCAGTTCTTGGTCTTTTTGTGAGAAGTTCT
GGATCTTGTTCAAGAACTTGTTCCAGTCTGGGATTTTCGCAGATAGGGTT
AGCAGT Run BLAST on NCBI protein sequence of TCONS_00035576-protein >TCONS_00035576-protein ID=TCONS_00035576-protein|Name=TCONS_00035576-protein|organism=Clytia hemisphaerica|type=polypeptide|length=568bp
LLTLSAKIPDWNKFLNKIQNFSQKDQELTAWMAVDALMYDREVITEVIQT
LHRHHEEQLKMVNSMKAAFSKDQENWNEKTRAQQSRIMDLEMQLDIKSAT
IHSLQSLKGGDTEDQALIQRMEKLKADQQNALRQKDEEIKVIREKLHEAQ
SVETEDVTLRTVQKREREYMKQFSNYYAYSKYLEDVILKRTSPSVLGTVQ
AEKPKFALAYLETRRGKSQGKPSTRISEQLKEDKKYKFIIYKTQNQPPQS
TSENPNADIHFSQVISDDSEDEDEEEDNPEVTYSTGINQTVQQNIPRKPG
VSETPKEGIDAITDLITTDLLARDKVTGIRITTLNRQEREEMQKSNRMRV
TNDMWPKYSGSRKHEAGMSESAKSFVESFDTLANAMGYDKKQNAVTIMTL
LHGLALQRVKLWQGGDHTRYVDYDGIVRELAKMQAVKSDSGEAVDALWNL
KQGDMSLEAFLKKFMKMKAEVELDPSMQFLIFKKALNPQFRMKLSEMPTQ
DFMTAYDDLMKYDSILRQNGKLEKFNAEGSQVGTSGGKGSGNNRRNNQQQ
PQQTHNQNHRTNNNRQQQ Run BLAST on NCBI transcript from alignment at sc0001334:57617..59322 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035576 ID=TCONS_00035576|Name=TCONS_00035576|organism=Clytia hemisphaerica|type=transcript|length=1706bp|location=Sequence derived from alignment at sc0001334:57617..59322 (Clytia hemisphaerica)
ACTGCTAACCCTATCTGCGAAAATCCCAGACTGGAACAAGTTCTTGAACA
AGATCCAGAACTTCTCACAAAAAGACCAAGAACTGACAGCTTGGATGGCT
GTCGACGCCCTAATGTATGACAGAGAAGTCATCACGGAGGTCATCCAAAC
CCTCCATCGACACCACGAAGAGCAACTGAAAATGGTGAACAGCATGAAAG
CCGCCTTCAGCAAAGATCAAGAAAACTGGAATGAGAAGACAAGAGCACAA
CAATCACGCATCATGGATCTCGAGATGCAACTGGACATCAAAAGCGCCAC
TATACACTCTCTTCAAAGTTTAAAGGGAGGCGACACTGAAGATCAAGCAC
TCATCCAAAGGATGGAGAAGCTTAAAGCAGACCAACAAAACGCCTTACGT
CAAAAGGACGAAGAAATCAAAGTCATTCGCGAAAAGCTACACGAAGCTCA
AAGTGTAGAGACAGAAGACGTAACACTCAGAACAGTtcaaaagagagaga
gagaatacATGAAACAATTCTCAAACTATTACGCATACTCCAAGTACCTA
GAGGACGTGATCCTGAAGAGAACATCCCCCTCGGTGCTAGGAACCGTCCA
AGCAGAAAAGCCCAAGTTCGCTTTGGCATATCTCGAAACACGTAGAGGAA
AGAGCCAAGGAAAACCCTCTACTCGCATTTCCGAACAACTGAAAGAAGAC
AAGAAGTATAAATTCATCATCTACAAAACCCAGAACCAACCCCCTCAGTC
TACAAGCGAAAACCCAAACGCAGACATCCACTTCTCTCAAGTAATCTCGG
ATGATTCAGAAGATGAAGACGAAGAGGAAGACAATCCAGAAGTCACATAC
TCTACTGGAATTAATCAAACGGTCCAGCAGAACATCCCAAGAAAACCAGG
AGTCAGTGAAACTCCAAAAGAAGGAATTGATGCAATCACGGACCTCATCA
CCACGGACTTATTGGCTAGAGACAAAGTCACGGGTATCCGCATTACAACA
CTAAACAGACAAGAACGAGAAGAAATGCAGAAAAGCAACAGGATGCGTGT
CACCAATGACATGTGGCCAAAGTATTCGGGAAGCCGAAAGCACGAAGCTG
GAATGTCCGAATCTGCCAAATCCTTCGTCGAATCATTCGATACCCTAGCC
AACGCGATGGGATATGACAAGAAACAGAACGCAGTCACCATAATGACACT
TCTCCACGGACTAGCACTCCAACGAGTCAAGCTATGGCAAGGTGGAGATC
ACACAAGATACGTCGATTACGATGGCATTGTCCGCGAATTGGCAAAGATG
CAAGCCGTAAAGAGCGACTCAGGCGAAGCCGTAGACGCTCTATGGAATCT
GAAACAAGGAGATATGAGCCTCGAAGCATTCCtcaaaaaattcatgaaaa
tgaaGGCTGAAGTAGAATTGGATCCGTCAATGCAATTCCTTATCTTCAAG
AAAGCATTAAATCCACAATTCAGGATGAAGCTCTCAGAGATGCCAACTCA
GGACTTCATGACCGCGTATGACGATCTAATGAAATACGACAGTATCCTTC
GACAAAATGGAAAACTAGAAAAGTTCAACGCTGAGGGTTCTCAGGTTGGA
ACTTCGGGAGGAAAAGGCTCAGGAAACAACAGACGAAACAATCAACAACA
ACCCCAACAGACCCACAACCAAAATCACCGAACCAACAACAACAGACAAC
AACAAN Coding sequence (CDS) from alignment at sc0001334:57617..59322 >TCONS_00035576 ID=TCONS_00035576|Name=TCONS_00035576|organism=Clytia hemisphaerica|type=CDS|length=1704bp|location=Sequence derived from alignment at sc0001334:57617..59322 (Clytia hemisphaerica)
CTGCTAACCCTATCTGCGAAAATCCCAGACTGGAACAAGTTCTTGAACAA
GATCCAGAACTTCTCACAAAAAGACCAAGAACTGACAGCTTGGATGGCTG
TCGACGCCCTAATGTATGACAGAGAAGTCATCACGGAGGTCATCCAAACC
CTCCATCGACACCACGAAGAGCAACTGAAAATGGTGAACAGCATGAAAGC
CGCCTTCAGCAAAGATCAAGAAAACTGGAATGAGAAGACAAGAGCACAAC
AATCACGCATCATGGATCTCGAGATGCAACTGGACATCAAAAGCGCCACT
ATACACTCTCTTCAAAGTTTAAAGGGAGGCGACACTGAAGATCAAGCACT
CATCCAAAGGATGGAGAAGCTTAAAGCAGACCAACAAAACGCCTTACGTC
AAAAGGACGAAGAAATCAAAGTCATTCGCGAAAAGCTACACGAAGCTCAA
AGTGTAGAGACAGAAGACGTAACACTCAGAACAGTtcaaaagagagagag
agaatacATGAAACAATTCTCAAACTATTACGCATACTCCAAGTACCTAG
AGGACGTGATCCTGAAGAGAACATCCCCCTCGGTGCTAGGAACCGTCCAA
GCAGAAAAGCCCAAGTTCGCTTTGGCATATCTCGAAACACGTAGAGGAAA
GAGCCAAGGAAAACCCTCTACTCGCATTTCCGAACAACTGAAAGAAGACA
AGAAGTATAAATTCATCATCTACAAAACCCAGAACCAACCCCCTCAGTCT
ACAAGCGAAAACCCAAACGCAGACATCCACTTCTCTCAAGTAATCTCGGA
TGATTCAGAAGATGAAGACGAAGAGGAAGACAATCCAGAAGTCACATACT
CTACTGGAATTAATCAAACGGTCCAGCAGAACATCCCAAGAAAACCAGGA
GTCAGTGAAACTCCAAAAGAAGGAATTGATGCAATCACGGACCTCATCAC
CACGGACTTATTGGCTAGAGACAAAGTCACGGGTATCCGCATTACAACAC
TAAACAGACAAGAACGAGAAGAAATGCAGAAAAGCAACAGGATGCGTGTC
ACCAATGACATGTGGCCAAAGTATTCGGGAAGCCGAAAGCACGAAGCTGG
AATGTCCGAATCTGCCAAATCCTTCGTCGAATCATTCGATACCCTAGCCA
ACGCGATGGGATATGACAAGAAACAGAACGCAGTCACCATAATGACACTT
CTCCACGGACTAGCACTCCAACGAGTCAAGCTATGGCAAGGTGGAGATCA
CACAAGATACGTCGATTACGATGGCATTGTCCGCGAATTGGCAAAGATGC
AAGCCGTAAAGAGCGACTCAGGCGAAGCCGTAGACGCTCTATGGAATCTG
AAACAAGGAGATATGAGCCTCGAAGCATTCCtcaaaaaattcatgaaaat
gaaGGCTGAAGTAGAATTGGATCCGTCAATGCAATTCCTTATCTTCAAGA
AAGCATTAAATCCACAATTCAGGATGAAGCTCTCAGAGATGCCAACTCAG
GACTTCATGACCGCGTATGACGATCTAATGAAATACGACAGTATCCTTCG
ACAAAATGGAAAACTAGAAAAGTTCAACGCTGAGGGTTCTCAGGTTGGAA
CTTCGGGAGGAAAAGGCTCAGGAAACAACAGACGAAACAATCAACAACAA
CCCCAACAGACCCACAACCAAAATCACCGAACCAACAACAACAGACAACA
ACAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035576-exon-sc0001334-1491911889:57617..59322 | TCONS_00035576-exon-sc0001334-1491911889:57617..59322 | Clytia hemisphaerica | exon |
| TCONS_00035576-exon-sc0001334-1510915933:57617..59322 | TCONS_00035576-exon-sc0001334-1510915933:57617..59322 | Clytia hemisphaerica | exon |
| TCONS_00035576-exon-sc0001334-1575043694:57617..59322 | TCONS_00035576-exon-sc0001334-1575043694:57617..59322 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001334 | supercontig | sc0001334:57617..59322 . |
Blast
The following BLAST results are available for this feature:
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