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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035574 ID=TCONS_00035574|Name=TCONS_00035574|organism=Clytia hemisphaerica|type=transcript|length=3547bp
acctggtcaaaaacaacaaaataaaagaagaagaaaaaaatcgaatttcg
ctgaatttaatttcgcgatttaacaattttggtgtgtttcgcggaattta
atttcgcgaattacgccccaattcgcgaaattaaattccgcgaaaatttc
ttccgcgaatatttcttctcgcgaaaatttcttcccttaaggtaggtgAT
AAATTTAGTCCATTTCTTCGGCATGTGATATTTTTTCCATGATCCGCCTC
AAGACTTTGTCTGACCTGGTTGATCGTTGCTTGGTCCCTTACCGTTATTC
ATCGCCCAGAATTACCTTTGTTCAAGTTTAGACTGATTCCATGGTTGGAA
TACTTTCTTACATTCAACAGTATGGTTCGACTTGTTGGTGGATTTCGGTT
TGGAAATTTTGCCTGAAATCTCTGCTTGACAGTTGCAAGACTTCTCTGAG
ATTGATGGTAGTTTTCAACAACAAACACAAGTTGCCCTTTAGTCAACTGC
ATCTTTATGTTTCTGTGTTTCATTTTGAATTCGTTTTGATTTCAGTTTTA
TAACTATCTCGAactttcaaatttccaaccatGGGAATTAAAACTCAATT
TTCTAATTAACAAAAAGGTCGTTAgatctgattttttttcatgtaAAGCT
GGATAGTGCAGCTTTCATAggctttttaaagtaaaaaatttcGATTTGTG
GATGTTCTACAATTTTACTTTACTTTTTGAGTATACTCTTTTCCTTCCAA
TAGCTTGTATAttctttgataaaaattataGAACATAAAATTAATatact
ttttcagttttttggacctacctccgggtaccccggtggaggttctataa
attaacccatgtccgttcgttcgtccgtccgtccgtctgtttccagcttt
tctcaggattagctaattagttttttctgattttttgcacaatgatgcaa
aatgggaatgcccagaacgtgacggagcccgattttttgagaaaaaattt
atttgggcaaatttgggccaaaaactacctaaaaatagggttttttgaaa
tcctgtcattacttttttttgtacaaagatggagggcaagattctctaaa
gaatggctgaagtggtttttcccggaaaattcttattcgccttaaaaaac
ggatttttgtattttggggaaacattctctacggtgtagagagcagataa
actcgataatccaaatttatctggtcgctggtcgtggtcaccatttctgg
tcgatgtttagaaactcccttcATAAGCTATAACCGAACTCAAAGtattc
aaaaagtgaaatcCTACCAACGAATGATATGCTTTCCATATTATCCTTTA
TAacttttaactcgtgttttgtACAGCCATGAATCCTTCGGCAAGGCTAA
CAACCAGTACTTAGTTTACGAACCTGCATATTTCTTTAATCGTATATTCC
AATGCAATATTTCAAACCGGCACTTTTGAATTGCATTTTGAAAAGGAGGC
ACAAGGACAACACTTCTCGGGAGTCAAGCTCTCCTTGGATTTTGGTAGCT
GAGATGTCATTATCCCAAACATTATGTAATAGTAACTACTTTTCCGCTTT
GTTTTTCACCAAAAGTGGTATATTAACGTCATTTAAGTCTGGAAGTACTG
AACCGTTGCAGATCTTCTTGTAAGGGACTCTTTTTCGACTTGTTTCAATG
AACCTAAAATGCTAATAGTTTCACCAAGAACTCTAGGTTACTGAATTTTT
TCTGGTCATccttatctttttcttttgctaTTCTAAATTCTAATGACATA
GCATTGGATTCAGGCTCTTCGACTCCAGTAGATTTATACAAGATTTTTTC
CGCATCCGGCAATCTCTTACATGCCGGCTTCTTCAAACGACTAAAAATTT
GCTATAATATTACTAAACGATATTTAAACAACTGCGTGACCACAGGGGCA
TTGTCCCAACTCATAAGTATAAAATCTagtattcaaaaattttccaacca
ttCTGACTTAAATAGATCATATCCTTTTGGCTTCCGAATGTTGACATTCT
CTGTCACTCTAggttctttctttctttctttctctctGATCCAATCTTAC
AAAAGAATTTAGAGTTTAGATCAACATTCTTTCCAAACTGTTCACGTTAA
GCAAAAGTGACACCCATTAAGACAGGCGTACTATCTTATCTCGGAATAGG
ATATTGTTGCTCGTCAAATAGTTGTAGAGAACAACTGTTGAAGACTATCA
TCAATGCCATTAATATGGTCTAACTCAataaaagtgactgaaaacttttt
attgATCTCTATCTCAAGTGTTAGACCGAGTCGAAATTCAAAACATGCGA
AAAACAATTATTTGCATGGAAAAAACCAACAACAGTATGCATAGCATTTT
GGTGTTATCCGACGAATGCCTAAATACGGTGTTCGTAACTGGTGACAGCT
AGATTCtgtaaaccaaaacaaacgagttttaatttcgcgaaaatgttaat
ccgattaaagtagtttgtttatctaattgCCATTTGCACCAGGTGTTCTC
ACCTTTGGGACAAAATTTGTGAATTTCATCAGACGGAAACTCCGCACAAT
GAAATAGTACTGCACCGATTGCCTTCTTCATCGCATATACATTCCCAATA
TTGCCCCTGATCATGCCATACCAGAATAGATTTTCATGGGATTAATTATG
GTGTCAGTTAGCTTTTCTTTTCCTGATACCTTGATAATTTTTGTGACGTT
TCCTTTCcctttttgataacttttctCTTGTCTATAATCTTTCACTAAGT
CACTTGCACACATGGCCCACGCATTCTAGCTTGGAAGTCGAAACTCATTG
TTTCTCGGTCACACTTTTGTTATAGAAAACACaatttccgaaatttggtt
ttaatTTTGGTAAGTGAGACCAGCggtaaattcgaatttcccaccgTAGT
ATTTTTGAGGTTGAAAACTGCCTTACAGCTGAAACCTgttcagattataa
aaatacaagacGACTCTCCTGTCTACCTGTCTCTCTATGCCTAGTAGCTT
ACCTTATGTAATATGTATCAAAGCTTAATCTCCATCACCAAGACATTGCA
ATTCAACTTTAGTTAAATGGGCGATGAAATGTGACAAATTGTGTTGCGCT
AAAGATATATTTCTACATACctatatatttctttgtttcgGGGAAAGTCG
ATCTTTTAAGTAGCTGGCGATGAAATCTTTGGTGCTTGTTCTTTTTAACG
TCTCACCTATCGTTCATTTAATTTTCTGGAAGATCTCTACTCAATCGACT
TTTCACAAAGAGCCTTTAAAGTTGGTAGATGTGTGCTACCTTTTATTGAG
ACCCAAAAACAACACATTAACATATACTATTTCCTTGAGACTGAAGTTTG
GTTGTGCTCATGTAATTCGTTTTCTTAAAATGCAACAGTCAATTCTTCTG
CTTGCTTTAGTCTTTATCGATTTATCTGACTTTATTTGAGCTATTTTTCG
TCTAAAACATCACGATAAATTTCTGCCCGAATTATGTTGGTTTGGGG Run BLAST on NCBI transcript from alignment at sc0001334:50945..54491 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035574 ID=TCONS_00035574|Name=TCONS_00035574|organism=Clytia hemisphaerica|type=transcript|length=3547bp|location=Sequence derived from alignment at sc0001334:50945..54491 (Clytia hemisphaerica)
CCCCAAACCAACATAATTCGGGCAGAAATTTATCGTGATGTTTTAGACGA
AAAATAGCTCAAATAAAGTCAGATAAATCGATAAAGACTAAAGCAAGCAG
AAGAATTGACTGTTGCATTTTAAGAAAACGAATTACATGAGCACAACCAA
ACTTCAGTCTCAAGGAAATAGTATATGTTAATGTGTTGTTTTTGGGTCTC
AATAAAAGGTAGCACACATCTACCAACTTTAAAGGCTCTTTGTGAAAAGT
CGATTGAGTAGAGATCTTCCAGAAAATTAAATGAACGATAGGTGAGACGT
TAAAAAGAACAAGCACCAAAGATTTCATCGCCAGCTACTTAAAAGATCGA
CTTTCCCcgaaacaaagaaatatatagGTATGTAGAAATATATCTTTAGC
GCAACACAATTTGTCACATTTCATCGCCCATTTAACTAAAGTTGAATTGC
AATGTCTTGGTGATGGAGATTAAGCTTTGATACATATTACATAAGGTAAG
CTACTAGGCATAGAGAGACAGGTAGACAGGAGAGTCgtcttgtattttta
taatctgaacAGGTTTCAGCTGTAAGGCAGTTTTCAACCTCAAAAATACT
AcggtgggaaattcgaatttaccGCTGGTCTCACTTACCAAAattaaaac
caaatttcggaaattGTGTTTTCTATAACAAAAGTGTGACCGAGAAACAA
TGAGTTTCGACTTCCAAGCTAGAATGCGTGGGCCATGTGTGCAAGTGACT
TAGTGAAAGATTATAGACAAGagaaaagttatcaaaaaggGAAAGGAAAC
GTCACAAAAATTATCAAGGTATCAGGAAAAGAAAAGCTAACTGACACCAT
AATTAATCCCATGAAAATCTATTCTGGTATGGCATGATCAGGGGCAATAT
TGGGAATGTATATGCGATGAAGAAGGCAATCGGTGCAGTACTATTTCATT
GTGCGGAGTTTCCGTCTGATGAAATTCACAAATTTTGTCCCAAAGGTGAG
AACACCTGGTGCAAATGGcaattagataaacaaactactttaatcggatt
aacattttcgcgaaattaaaactcgtttgttttggtttacaGAATCTAGC
TGTCACCAGTTACGAACACCGTATTTAGGCATTCGTCGGATAACACCAAA
ATGCTATGCATACTGTTGTTGGTTTTTTCCATGCAAATAATTGTTTTTCG
CATGTTTTGAATTTCGACTCGGTCTAACACTTGAGATAGAGATcaataaa
aagttttcagtcacttttatTGAGTTAGACCATATTAATGGCATTGATGA
TAGTCTTCAACAGTTGTTCTCTACAACTATTTGACGAGCAACAATATCCT
ATTCCGAGATAAGATAGTACGCCTGTCTTAATGGGTGTCACTTTTGCTTA
ACGTGAACAGTTTGGAAAGAATGTTGATCTAAACTCTAAATTCTTTTGTA
AGATTGGATCagagagaaagaaagaaagaaagaaccTAGAGTGACAGAGA
ATGTCAACATTCGGAAGCCAAAAGGATATGATCTATTTAAGTCAGaatgg
ttggaaaatttttgaatactAGATTTTATACTTATGAGTTGGGACAATGC
CCCTGTGGTCACGCAGTTGTTTAAATATCGTTTAGTAATATTATAGCAAA
TTTTTAGTCGTTTGAAGAAGCCGGCATGTAAGAGATTGCCGGATGCGGAA
AAAATCTTGTATAAATCTACTGGAGTCGAAGAGCCTGAATCCAATGCTAT
GTCATTAGAATTTAGAAtagcaaaagaaaaagataaggATGACCAGAAAA
AATTCAGTAACCTAGAGTTCTTGGTGAAACTATTAGCATTTTAGGTTCAT
TGAAACAAGTCGAAAAAGAGTCCCTTACAAGAAGATCTGCAACGGTTCAG
TACTTCCAGACTTAAATGACGTTAATATACCACTTTTGGTGAAAAACAAA
GCGGAAAAGTAGTTACTATTACATAATGTTTGGGATAATGACATCTCAGC
TACCAAAATCCAAGGAGAGCTTGACTCCCGAGAAGTGTTGTCCTTGTGCC
TCCTTTTCAAAATGCAATTCAAAAGTGCCGGTTTGAAATATTGCATTGGA
ATATACGATTAAAGAAATATGCAGGTTCGTAAACTAAGTACTGGTTGTTA
GCCTTGCCGAAGGATTCATGGCTGTacaaaacacgagttaaaagtTATAA
AGGATAATATGGAAAGCATATCATTCGTTGGTAGgatttcactttttgaa
taCTTTGAGTTCGGTTATAGCTTATgaagggagtttctaaacatcgacca
gaaatggtgaccacgaccagcgaccagataaatttggattatcgagttta
tctgctctctacaccgtagagaatgtttccccaaaatacaaaaatccgtt
ttttaaggcgaataagaattttccgggaaaaaccacttcagccattcttt
agagaatcttgccctccatctttgtacaaaaaaaagtaatgacaggattt
caaaaaaccctatttttaggtagtttttggcccaaatttgcccaaataaa
ttttttctcaaaaaatcgggctccgtcacgttctgggcattcccattttg
catcattgtgcaaaaaatcagaaaaaactaattagctaatcctgagaaaa
gctggaaacagacggacggacggacgaacgaacggacatgggttaattta
tagaacctccaccggggtacccggaggtaggtccaaaaaactgaaaaagt
atATTAATTTTATGTTCtataatttttatcaaagaaTATACAAGCTATTG
GAAGGAAAAGAGTATACTCAAAAAGTAAAGTAAAATTGTAGAACATCCAC
AAATCgaaattttttactttaaaaagccTATGAAAGCTGCACTATCCAGC
TTtacatgaaaaaaaatcagatcTAACGACCTTTTTGTTAATTAGAAAAT
TGAGTTTTAATTCCCatggttggaaatttgaaagtTCGAGATAGTTATAA
AACTGAAATCAAAACGAATTCAAAATGAAACACAGAAACATAAAGATGCA
GTTGACTAAAGGGCAACTTGTGTTTGTTGTTGAAAACTACCATCAATCTC
AGAGAAGTCTTGCAACTGTCAAGCAGAGATTTCAGGCAAAATTTCCAAAC
CGAAATCCACCAACAAGTCGAACCATACTGTTGAATGTAAGAAAGTATTC
CAACCATGGAATCAGTCTAAACTTGAACAAAGGTAATTCTGGGCGATGAA
TAACGGTAAGGGACCAAGCAACGATCAACCAGGTCAGACAAAGTCTTGAG
GCGGATCATGGAAAAAATATCACATGCCGAAGAAATGGACTAAATTTATc
acctaccttaagggaagaaattttcgcgagaagaaatattcgcggaagaa
attttcgcggaatttaatttcgcgaattggggcgtaattcgcgaaattaa
attccgcgaaacacaccaaaattgttaaatcgcgaaattaaattcagcga
aattcgatttttttcttcttcttttattttgttgtttttgaccaggt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035574-exon-sc0001334-1491911889:50945..54491 | TCONS_00035574-exon-sc0001334-1491911889:50945..54491 | Clytia hemisphaerica | exon |
| TCONS_00035574-exon-sc0001334-1510915933:50945..54491 | TCONS_00035574-exon-sc0001334-1510915933:50945..54491 | Clytia hemisphaerica | exon |
| TCONS_00035574-exon-sc0001334-1575043694:50945..54491 | TCONS_00035574-exon-sc0001334-1575043694:50945..54491 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001334 | supercontig | sc0001334:50945..54491 . |
Blast
The following BLAST results are available for this feature:
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